RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PLPPR3Q6T4P5 718 aa13.41□□□□□ -0.26
LIMCH1-217ENST00000512946 CHMP3Q9Y3E7 222 aa13.4□□□□□ -0.26
LIMCH1-217ENST00000512946 MAGEC2Q9UBF1 373 aaPredicted RBP13.4□□□□□ -0.26
LIMCH1-217ENST00000512946 CCDC181Q5TID7 509 aa13.4□□□□□ -0.27
LIMCH1-217ENST00000512946 MEX3CQ5U5Q3 659 aaKnown RBP13.4□□□□□ -0.27
LIMCH1-217ENST00000512946 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.4□□□□□ -0.27
LIMCH1-217ENST00000512946 POTEB2H3BUK9 544 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 TCEAL9Q9UHQ7 104 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 ERICH2A1L162 156 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 SMC2O95347 1197 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 LUZP1Q86V48 1076 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 DZIP1LQ8IYY4 767 aaKnown RBP13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 GBP2P32456 591 aaPredicted RBP13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 NF2P35240 595 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 PPFIBP1Q86W92 1011 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 AEBP1Q8IUX7 1158 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 CRACR2AQ9BSW2 395 aa13.39□□□□□ -0.27
LIMCH1-217ENST00000512946 FMN1Q68DA7 1419 aa13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 SSR1P43307 286 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 FOXD4L6Q3SYB3 417 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 FOXD4L3Q6VB84 417 aaPredicted RBP13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 RNF214Q8ND24 703 aa13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 RBM33Q96EV2 1170 aaKnown RBP13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 CCDC91Q7Z6B0 441 aa13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 TIGD1Q96MW7 591 aa13.38□□□□□ -0.27
LIMCH1-217ENST00000512946 ANKRD30AQ9BXX3 1397 aa13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 ENOX2Q16206 610 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 RSPH4AQ5TD94 716 aa13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 BAZ1BQ9UIG0 1483 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 IL27Q8NEV9 243 aa13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 PRKRIP1Q9H875 184 aaPredicted RBP13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 KIF3BO15066 747 aa13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 DHX16O60231 1041 aaKnown RBP13.37□□□□□ -0.27
LIMCH1-217ENST00000512946 ARHGAP35Q9NRY4 1499 aa13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 KIAA1328Q86T90 577 aa13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 CENPHQ9H3R5 247 aa13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 IFIT2P09913 472 aaKnown RBP13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 CCDC102AQ96A19 550 aa13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 PLEKHG5O94827 1062 aa13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 PPM1EQ8WY54 764 aa13.36□□□□□ -0.27
LIMCH1-217ENST00000512946 VPS8Q8N3P4 1428 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 WDR33Q9C0J8 1336 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 NOL10Q9BSC4 688 aaKnown RBP13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 WRNQ14191 1432 aaPredicted RBP eCLIP13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 NINLQ9Y2I6 1382 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 MYO15BQ96JP2 1530 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 NEMFO60524 1076 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 SETSIPP0DME0 302 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 HIP1O00291 1037 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 DYNC1I1O14576 645 aa13.35□□□□□ -0.27
LIMCH1-217ENST00000512946 COG6Q9Y2V7 657 aa13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 PKD2Q13563 968 aa13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 ZSCAN12O43309 604 aa13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 CCDC148Q8NFR7 591 aa13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 CCDC43Q96MW1 224 aaKnown RBP13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 IRX3P78415 501 aaPredicted RBP13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 STIM1Q13586 685 aa13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 SYCP1Q15431 976 aa13.34□□□□□ -0.27
LIMCH1-217ENST00000512946 FRAT2O75474 233 aaPredicted RBP13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 RALYLQ86SE5 291 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 SMTNL1A8MU46 457 aa13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 KIF18AQ8NI77 898 aa13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 STAMBPO95630 424 aa13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 IVLP07476 585 aa13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 SMC1AQ14683 1233 aaKnown RBP13.33□□□□□ -0.28
LIMCH1-217ENST00000512946 KCNH8Q96L42 1107 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 SERPINC1P01008 464 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 MAP2K1Q02750 393 aaPredicted RBP13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 PRIMPOLQ96LW4 560 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 ERICH4A6NGS2 130 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 ZFYVE27Q5T4F4 411 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 GIGYF2Q6Y7W6 1299 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 CEP57L1Q8IYX8 460 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 MPHOSPH9Q99550 1183 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 PRPF40AO75400 957 aaKnown RBP13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 ANKRD1Q15327 319 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 FEZ1Q99689 392 aa13.32□□□□□ -0.28
LIMCH1-217ENST00000512946 RAB3GAP2Q9H2M9 1393 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 GTF2A1P52655 376 aaPredicted RBP13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 IMMTQ16891 758 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 NBPF1Q3BBV0 1214 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 NFXL1Q6ZNB6 911 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 CCDC83Q8IWF9 413 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 BMS1Q14692 1282 aaKnown RBP13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 CFAP57Q96MR6 1250 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 KRT85P78386 507 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 DNAAF4Q8WXU2 420 aa13.31□□□□□ -0.28
LIMCH1-217ENST00000512946 GTPBP4Q9BZE4 634 aaKnown RBP13.3□□□□□ -0.28
LIMCH1-217ENST00000512946 TNMDQ9H2S6 317 aa13.3□□□□□ -0.28
LIMCH1-217ENST00000512946 MCM4P33991 863 aa13.3□□□□□ -0.28
LIMCH1-217ENST00000512946 ZMYND15Q9H091 742 aa13.3□□□□□ -0.28
LIMCH1-217ENST00000512946 G3V3G9 751 aa13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 DDX58O95786 925 aaKnown RBP13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 PTPN14Q15678 1187 aa13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 DCAF8Q5TAQ9 597 aa13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 SPECC1LQ69YQ0 1117 aa13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 G3BP1Q13283 466 aaKnown RBP eCLIP13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 TAX1BP1Q86VP1 789 aa13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 ANKRD62A6NC57 917 aa13.29□□□□□ -0.28
LIMCH1-217ENST00000512946 JAKMIP3Q5VZ66 844 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms