RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 DLC1Q96QB1 1528 aa21.71■■□□□ 1.07
SQSTM1-213ENST00000510187 SLC24A1O60721 1099 aa21.71■■□□□ 1.07
SQSTM1-213ENST00000510187 SAFB2Q14151 953 aaKnown RBP eCLIP21.71■■□□□ 1.07
SQSTM1-213ENST00000510187 KTN1Q86UP2 1357 aaKnown RBP21.71■■□□□ 1.07
SQSTM1-213ENST00000510187 DISP3Q9P2K9 1392 aa21.71■■□□□ 1.07
SQSTM1-213ENST00000510187 SBNO2Q9Y2G9 1366 aa21.7■■□□□ 1.06
SQSTM1-213ENST00000510187 TECPR2O15040 1411 aa21.7■■□□□ 1.06
SQSTM1-213ENST00000510187 PTPRUQ92729 1446 aa21.7■■□□□ 1.06
SQSTM1-213ENST00000510187 AMOTL2Q9Y2J4 779 aa21.69■■□□□ 1.06
SQSTM1-213ENST00000510187 PIK3R4Q99570 1358 aa21.69■■□□□ 1.06
SQSTM1-213ENST00000510187 QRICH2Q9H0J4 1663 aa21.69■■□□□ 1.06
SQSTM1-213ENST00000510187 WAPLQ7Z5K2 1190 aa21.68■■□□□ 1.06
SQSTM1-213ENST00000510187 KNDC1Q76NI1 1749 aa21.67■■□□□ 1.06
SQSTM1-213ENST00000510187 SIRT1Q96EB6 747 aa21.67■■□□□ 1.06
SQSTM1-213ENST00000510187 CPS1P31327 1500 aa21.66■■□□□ 1.06
SQSTM1-213ENST00000510187 FAM135BQ49AJ0 1406 aa21.66■■□□□ 1.06
SQSTM1-213ENST00000510187 PLEKHH1Q9ULM0 1364 aa21.66■■□□□ 1.06
SQSTM1-213ENST00000510187 ROBO2Q9HCK4 1378 aa21.65■■□□□ 1.06
SQSTM1-213ENST00000510187 CDCA8Q53HL2 280 aa21.65■■□□□ 1.06
SQSTM1-213ENST00000510187 PPP4R2Q9NY27 417 aa21.65■■□□□ 1.06
SQSTM1-213ENST00000510187 SMG6Q86US8 1419 aaKnown RBP21.65■■□□□ 1.06
SQSTM1-213ENST00000510187 MINK1Q8N4C8 1332 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-213ENST00000510187 KCNA6P17658 529 aa21.62■■□□□ 1.05
SQSTM1-213ENST00000510187 RBM19Q9Y4C8 960 aaKnown RBP21.62■■□□□ 1.05
SQSTM1-213ENST00000510187 PTCH1Q13635 1447 aa21.62■■□□□ 1.05
SQSTM1-213ENST00000510187 EVC2Q86UK5 1308 aa21.61■■□□□ 1.05
SQSTM1-213ENST00000510187 XRN1Q8IZH2 1706 aaKnown RBP21.61■■□□□ 1.05
SQSTM1-213ENST00000510187 STRCQ7RTU9 1775 aa21.6■■□□□ 1.05
SQSTM1-213ENST00000510187 CHD2O14647 1828 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-213ENST00000510187 BRD4O60885 1362 aaPredicted RBP21.58■■□□□ 1.05
SQSTM1-213ENST00000510187 TULP4Q9NRJ4 1543 aa21.57■■□□□ 1.04
SQSTM1-213ENST00000510187 RALBP1Q15311 655 aa21.57■■□□□ 1.04
SQSTM1-213ENST00000510187 IRX6P78412 446 aaPredicted RBP21.55■■□□□ 1.04
SQSTM1-213ENST00000510187 ANP32EQ9BTT0 268 aa21.55■■□□□ 1.04
SQSTM1-213ENST00000510187 SRPK2P78362 688 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-213ENST00000510187 PNISRQ8TF01 805 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-213ENST00000510187 CABP2Q9NPB3 220 aa21.55■■□□□ 1.04
SQSTM1-213ENST00000510187 CDK19Q9BWU1 502 aa21.54■■□□□ 1.04
SQSTM1-213ENST00000510187 MYBBP1AQ9BQG0 1328 aaKnown RBP21.54■■□□□ 1.04
SQSTM1-213ENST00000510187 PUS7Q96PZ0 661 aaKnown RBP21.53■■□□□ 1.04
SQSTM1-213ENST00000510187 NUDCQ9Y266 331 aa21.53■■□□□ 1.04
SQSTM1-213ENST00000510187 NWD1Q149M9 1564 aa21.52■■□□□ 1.04
SQSTM1-213ENST00000510187 WASLO00401 505 aaPredicted RBP21.52■■□□□ 1.03
SQSTM1-213ENST00000510187 RNF123Q5XPI4 1314 aa21.52■■□□□ 1.03
SQSTM1-213ENST00000510187 TMC1Q8TDI8 760 aa21.51■■□□□ 1.03
SQSTM1-213ENST00000510187 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.51■■□□□ 1.03
SQSTM1-213ENST00000510187 DMRT2Q9Y5R5 561 aa21.5■■□□□ 1.03
SQSTM1-213ENST00000510187 RBM33Q96EV2 1170 aaKnown RBP21.49■■□□□ 1.03
SQSTM1-213ENST00000510187 NKTRP30414 1462 aaKnown RBP21.48■■□□□ 1.03
SQSTM1-213ENST00000510187 ADGRB2O60241 1585 aa21.47■■□□□ 1.03
SQSTM1-213ENST00000510187 ATAD2Q6PL18 1390 aa21.47■■□□□ 1.03
SQSTM1-213ENST00000510187 PROSER2Q86WR7 435 aaPredicted RBP21.47■■□□□ 1.03
SQSTM1-213ENST00000510187 PANK3Q9H999 370 aa21.47■■□□□ 1.03
SQSTM1-213ENST00000510187 PARD3Q8TEW0 1356 aa21.47■■□□□ 1.03
SQSTM1-213ENST00000510187 AEBP2Q6ZN18 517 aaPredicted RBP21.46■■□□□ 1.03
SQSTM1-213ENST00000510187 MYOM1P52179 1685 aa21.46■■□□□ 1.03
SQSTM1-213ENST00000510187 FANCIQ9NVI1 1328 aa21.46■■□□□ 1.03
SQSTM1-213ENST00000510187 SLC12A5Q9H2X9 1139 aa21.45■■□□□ 1.02
SQSTM1-213ENST00000510187 INSRP06213 1382 aa21.45■■□□□ 1.02
SQSTM1-213ENST00000510187 C14orf37Q86TY3 774 aa21.43■■□□□ 1.02
SQSTM1-213ENST00000510187 STRCP1A6NGW2 1772 aa21.42■■□□□ 1.02
SQSTM1-213ENST00000510187 ZNF335Q9H4Z2 1342 aaPredicted RBP21.42■■□□□ 1.02
SQSTM1-213ENST00000510187 NLRP13Q86W25 1043 aa21.42■■□□□ 1.02
SQSTM1-213ENST00000510187 NUDT16Q96DE0 195 aaKnown RBP21.42■■□□□ 1.02
SQSTM1-213ENST00000510187 NINLQ9Y2I6 1382 aa21.42■■□□□ 1.02
SQSTM1-213ENST00000510187 ADGRL3Q9HAR2 1447 aa21.41■■□□□ 1.02
SQSTM1-213ENST00000510187 NALCNQ8IZF0 1738 aa21.4■■□□□ 1.02
SQSTM1-213ENST00000510187 NUTM2FA1L443 756 aa21.4■■□□□ 1.02
SQSTM1-213ENST00000510187 TMEM94Q12767 1356 aa21.39■■□□□ 1.01
SQSTM1-213ENST00000510187 PER1O15534 1290 aaPredicted RBP21.39■■□□□ 1.01
SQSTM1-213ENST00000510187 CABP1Q9NZU7 370 aa21.39■■□□□ 1.01
SQSTM1-213ENST00000510187 CCDC61Q9Y6R9 512 aa21.39■■□□□ 1.01
SQSTM1-213ENST00000510187 PRR36Q9H6K5 1346 aa21.38■■□□□ 1.01
SQSTM1-213ENST00000510187 ATP7BP35670 1465 aa21.38■■□□□ 1.01
SQSTM1-213ENST00000510187 PPIP5K1Q6PFW1 1433 aa21.37■■□□□ 1.01
SQSTM1-213ENST00000510187 CDC42BPGQ6DT37 1551 aa21.37■■□□□ 1.01
SQSTM1-213ENST00000510187 ANKRD36BQ8N2N9 1353 aa21.36■■□□□ 1.01
SQSTM1-213ENST00000510187 CNGB1Q14028 1251 aaPredicted RBP21.36■■□□□ 1.01
SQSTM1-213ENST00000510187 KNSTRNQ9Y448 316 aa21.36■■□□□ 1.01
SQSTM1-213ENST00000510187 NCOA3Q9Y6Q9 1424 aa21.35■■□□□ 1.01
SQSTM1-213ENST00000510187 B4GALNT3Q6L9W6 998 aa21.35■■□□□ 1.01
SQSTM1-213ENST00000510187 TERF2IPQ9NYB0 399 aa21.35■■□□□ 1.01
SQSTM1-213ENST00000510187 CARD14Q9BXL6 1004 aa21.35■■□□□ 1.01
SQSTM1-213ENST00000510187 C19orf44Q9H6X5 657 aa21.35■■□□□ 1.01
SQSTM1-213ENST00000510187 PDE3BQ13370 1112 aa21.33■■□□□ 1.01
SQSTM1-213ENST00000510187 HDGFL2Q7Z4V5 671 aaPredicted RBP21.33■■□□□ 1.01
SQSTM1-213ENST00000510187 A0A1W2PP64 1363 aa21.33■■□□□ 1
SQSTM1-213ENST00000510187 ANKARQ7Z5J8 1434 aa21.33■■□□□ 1
SQSTM1-213ENST00000510187 FMN2Q9NZ56 1722 aa21.32■■□□□ 1
SQSTM1-213ENST00000510187 LRRC7Q96NW7 1537 aa21.32■■□□□ 1
SQSTM1-213ENST00000510187 CD163L1Q9NR16 1453 aa21.31■■□□□ 1
SQSTM1-213ENST00000510187 USP32Q8NFA0 1604 aa21.31■■□□□ 1
SQSTM1-213ENST00000510187 NSD3Q9BZ95 1437 aa21.31■■□□□ 1
SQSTM1-213ENST00000510187 TOPAZ1Q8N9V7 1692 aa21.29■■□□□ 1
SQSTM1-213ENST00000510187 BLMP54132 1417 aaPredicted RBP21.29■■□□□ 1
SQSTM1-213ENST00000510187 PLEKHG3A1L390 1219 aa21.29■■□□□ 1
SQSTM1-213ENST00000510187 ATF3P18847 181 aa21.29■■□□□ 1
SQSTM1-213ENST00000510187 CC2D1BQ5T0F9 858 aaKnown RBP21.29■■□□□ 1
SQSTM1-213ENST00000510187 MSH6P52701 1360 aa21.28■■□□□ 1
SQSTM1-213ENST00000510187 AMER1Q5JTC6 1135 aaPredicted RBP21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms