RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ZMYND15Q9H091 742 aa21.69■■□□□ 1.06
SQSTM1-211ENST00000506690 GRPEL1Q9HAV7 217 aa21.69■■□□□ 1.06
SQSTM1-211ENST00000506690 RWDD1Q9H446 243 aaPredicted RBP21.68■■□□□ 1.06
SQSTM1-211ENST00000506690 MYH16Q9H6N6 1097 aa21.68■■□□□ 1.06
SQSTM1-211ENST00000506690 C22orf23Q9BZE7 217 aa21.67■■□□□ 1.06
SQSTM1-211ENST00000506690 POLR3AO14802 1390 aaPredicted RBP21.67■■□□□ 1.06
SQSTM1-211ENST00000506690 ESPNB1AK53 854 aa21.67■■□□□ 1.06
SQSTM1-211ENST00000506690 DDX11L8A8MPP1 907 aa21.66■■□□□ 1.06
SQSTM1-211ENST00000506690 ZNF692Q9BU19 519 aaPredicted RBP21.66■■□□□ 1.06
SQSTM1-211ENST00000506690 TNNQ9UQP3 1299 aa21.66■■□□□ 1.06
SQSTM1-211ENST00000506690 EFCAB2Q5VUJ9 269 aa21.65■■□□□ 1.06
SQSTM1-211ENST00000506690 PLCH2O75038 1416 aa21.65■■□□□ 1.06
SQSTM1-211ENST00000506690 ERBB4Q15303 1308 aa21.64■■□□□ 1.06
SQSTM1-211ENST00000506690 STAC3Q96MF2 364 aa21.64■■□□□ 1.05
SQSTM1-211ENST00000506690 PHF23Q9BUL5 403 aaPredicted RBP21.64■■□□□ 1.05
SQSTM1-211ENST00000506690 NCOA3Q9Y6Q9 1424 aa21.64■■□□□ 1.05
SQSTM1-211ENST00000506690 SHPRHQ149N8 1683 aa21.64■■□□□ 1.05
SQSTM1-211ENST00000506690 DDIT3P35638 169 aa21.62■■□□□ 1.05
SQSTM1-211ENST00000506690 CARD14Q9BXL6 1004 aa21.62■■□□□ 1.05
SQSTM1-211ENST00000506690 IQSEC2Q5JU85 1478 aa21.62■■□□□ 1.05
SQSTM1-211ENST00000506690 KIAA1210Q9ULL0 1709 aa21.61■■□□□ 1.05
SQSTM1-211ENST00000506690 MFAP1P55081 439 aaKnown RBP21.59■■□□□ 1.05
SQSTM1-211ENST00000506690 WDR63Q8IWG1 891 aa21.59■■□□□ 1.05
SQSTM1-211ENST00000506690 ERVK-7P63135 1459 aa21.59■■□□□ 1.05
SQSTM1-211ENST00000506690 TRPM2O94759 1503 aa21.59■■□□□ 1.05
SQSTM1-211ENST00000506690 KANK1Q14678 1352 aa21.59■■□□□ 1.05
SQSTM1-211ENST00000506690 MVPQ14764 893 aaKnown RBP21.58■■□□□ 1.04
SQSTM1-211ENST00000506690 HSCBQ8IWL3 235 aa21.58■■□□□ 1.04
SQSTM1-211ENST00000506690 RUNDC1Q96C34 613 aa21.58■■□□□ 1.04
SQSTM1-211ENST00000506690 SLC24A1O60721 1099 aa21.56■■□□□ 1.04
SQSTM1-211ENST00000506690 BCL2L13Q9BXK5 485 aa21.56■■□□□ 1.04
SQSTM1-211ENST00000506690 TCP11L2Q8N4U5 519 aa21.55■■□□□ 1.04
SQSTM1-211ENST00000506690 NPM1P06748 294 aaKnown RBP eCLIP21.55■■□□□ 1.04
SQSTM1-211ENST00000506690 NEUROD2Q15784 382 aa21.55■■□□□ 1.04
SQSTM1-211ENST00000506690 RRP7AQ9Y3A4 280 aaKnown RBP21.55■■□□□ 1.04
SQSTM1-211ENST00000506690 ASXL2Q76L83 1435 aa21.55■■□□□ 1.04
SQSTM1-211ENST00000506690 ARAP3Q8WWN8 1544 aa21.54■■□□□ 1.04
SQSTM1-211ENST00000506690 TPM2P07951 284 aa21.54■■□□□ 1.04
SQSTM1-211ENST00000506690 CCDC27Q2M243 656 aa21.54■■□□□ 1.04
SQSTM1-211ENST00000506690 GAS2L3Q86XJ1 694 aa21.54■■□□□ 1.04
SQSTM1-211ENST00000506690 TRIM44Q96DX7 344 aaPredicted RBP21.54■■□□□ 1.04
SQSTM1-211ENST00000506690 SNX21Q969T3 373 aa21.54■■□□□ 1.04
SQSTM1-211ENST00000506690 CLTCL1P53675 1640 aa21.53■■□□□ 1.04
SQSTM1-211ENST00000506690 PTPRTO14522 1441 aa21.53■■□□□ 1.04
SQSTM1-211ENST00000506690 HDAC1Q13547 482 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-211ENST00000506690 SMC5Q8IY18 1101 aa21.52■■□□□ 1.04
SQSTM1-211ENST00000506690 TNPO1Q92973 898 aaKnown RBP21.52■■□□□ 1.04
SQSTM1-211ENST00000506690 CIZ1Q9ULV3 898 aaPredicted RBP21.52■■□□□ 1.04
SQSTM1-211ENST00000506690 RBM25P49756 843 aaKnown RBP21.51■■□□□ 1.03
SQSTM1-211ENST00000506690 TRAPPC8Q9Y2L5 1435 aa21.51■■□□□ 1.03
SQSTM1-211ENST00000506690 ABCA9Q8IUA7 1624 aa21.51■■□□□ 1.03
SQSTM1-211ENST00000506690 SKOR2Q2VWA4 1001 aaPredicted RBP21.5■■□□□ 1.03
SQSTM1-211ENST00000506690 ZKSCAN2Q63HK3 967 aa21.5■■□□□ 1.03
SQSTM1-211ENST00000506690 ABCC1P33527 1531 aa21.5■■□□□ 1.03
SQSTM1-211ENST00000506690 DZIP1LQ8IYY4 767 aaKnown RBP21.49■■□□□ 1.03
SQSTM1-211ENST00000506690 AFAP1Q8N556 730 aa21.49■■□□□ 1.03
SQSTM1-211ENST00000506690 NCBP3Q53F19 620 aaKnown RBP21.49■■□□□ 1.03
SQSTM1-211ENST00000506690 RAB3GAP1Q15042 981 aa21.48■■□□□ 1.03
SQSTM1-211ENST00000506690 GBP4Q96PP9 640 aa21.48■■□□□ 1.03
SQSTM1-211ENST00000506690 PTMSP20962 102 aa21.47■■□□□ 1.03
SQSTM1-211ENST00000506690 FTSJ3Q8IY81 847 aaKnown RBP21.47■■□□□ 1.03
SQSTM1-211ENST00000506690 PDCL3Q9H2J4 239 aa21.47■■□□□ 1.03
SQSTM1-211ENST00000506690 SPAG9O60271 1321 aaKnown RBP21.46■■□□□ 1.03
SQSTM1-211ENST00000506690 NEURL4Q96JN8 1562 aa21.46■■□□□ 1.03
SQSTM1-211ENST00000506690 MYO3AQ8NEV4 1616 aa21.46■■□□□ 1.03
SQSTM1-211ENST00000506690 CT47B1P0C2W7 299 aaPredicted RBP21.45■■□□□ 1.02
SQSTM1-211ENST00000506690 PPP1R9BQ96SB3 815 aa21.45■■□□□ 1.02
SQSTM1-211ENST00000506690 SBNO2Q9Y2G9 1366 aa21.44■■□□□ 1.02
SQSTM1-211ENST00000506690 MORC1Q86VD1 984 aa21.44■■□□□ 1.02
SQSTM1-211ENST00000506690 ABCA6Q8N139 1617 aa21.44■■□□□ 1.02
SQSTM1-211ENST00000506690 MAP3K4Q9Y6R4 1608 aa21.44■■□□□ 1.02
SQSTM1-211ENST00000506690 ZNF518AQ6AHZ1 1483 aa21.44■■□□□ 1.02
SQSTM1-211ENST00000506690 FANCAO15360 1455 aa21.43■■□□□ 1.02
SQSTM1-211ENST00000506690 CCDC173Q0VFZ6 552 aa21.43■■□□□ 1.02
SQSTM1-211ENST00000506690 NSD3Q9BZ95 1437 aa21.43■■□□□ 1.02
SQSTM1-211ENST00000506690 DDX19BQ9UMR2 479 aa21.42■■□□□ 1.02
SQSTM1-211ENST00000506690 MYOM2P54296 1465 aa21.42■■□□□ 1.02
SQSTM1-211ENST00000506690 CFAP70Q5T0N1 1121 aa21.41■■□□□ 1.02
SQSTM1-211ENST00000506690 TRIM27P14373 513 aa21.41■■□□□ 1.02
SQSTM1-211ENST00000506690 KIAA1211Q6ZU35 1233 aa21.41■■□□□ 1.02
SQSTM1-211ENST00000506690 ADGRB2O60241 1585 aa21.41■■□□□ 1.02
SQSTM1-211ENST00000506690 HSP90AB1P08238 724 aaKnown RBP21.4■■□□□ 1.02
SQSTM1-211ENST00000506690 ADGRL1O94910 1474 aa21.4■■□□□ 1.02
SQSTM1-211ENST00000506690 ZSCAN30Q86W11 494 aa21.39■■□□□ 1.02
SQSTM1-211ENST00000506690 IBTKQ9P2D0 1353 aaPredicted RBP21.39■■□□□ 1.02
SQSTM1-211ENST00000506690 TET3O43151 1660 aa21.39■■□□□ 1.01
SQSTM1-211ENST00000506690 USP32Q8NFA0 1604 aa21.39■■□□□ 1.01
SQSTM1-211ENST00000506690 KIF2CQ99661 725 aa21.39■■□□□ 1.01
SQSTM1-211ENST00000506690 DEPDC5O75140 1603 aa21.39■■□□□ 1.01
SQSTM1-211ENST00000506690 OFD1O75665 1012 aa21.38■■□□□ 1.01
SQSTM1-211ENST00000506690 TNNT2P45379 298 aaPredicted RBP21.38■■□□□ 1.01
SQSTM1-211ENST00000506690 CLEC17AQ6ZS10 378 aa21.37■■□□□ 1.01
SQSTM1-211ENST00000506690 NASPP49321 788 aaPredicted RBP21.37■■□□□ 1.01
SQSTM1-211ENST00000506690 MTHFSP49914 203 aa21.37■■□□□ 1.01
SQSTM1-211ENST00000506690 TERF1P54274 439 aa21.37■■□□□ 1.01
SQSTM1-211ENST00000506690 NUCB1Q02818 461 aa21.37■■□□□ 1.01
SQSTM1-211ENST00000506690 SMC4Q9NTJ3 1288 aa21.37■■□□□ 1.01
SQSTM1-211ENST00000506690 ATF7IPQ6VMQ6 1270 aa21.36■■□□□ 1.01
SQSTM1-211ENST00000506690 ITPRIPQ8IWB1 547 aa21.36■■□□□ 1.01
SQSTM1-211ENST00000506690 ZBTB40Q9NUA8 1239 aa21.35■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms