RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 ATF3P18847 181 aa17.7■□□□□ 0.42
SNCA-208ENST00000505199 C14orf37Q86TY3 774 aa17.7■□□□□ 0.42
SNCA-208ENST00000505199 PRAM1Q96QH2 718 aa17.7■□□□□ 0.42
SNCA-208ENST00000505199 POGKQ9P215 609 aa17.7■□□□□ 0.42
SNCA-208ENST00000505199 TRAK1Q9UPV9 953 aa17.7■□□□□ 0.42
SNCA-208ENST00000505199 FBXO41Q8TF61 875 aa17.69■□□□□ 0.42
SNCA-208ENST00000505199 CARD11Q9BXL7 1154 aa17.69■□□□□ 0.42
SNCA-208ENST00000505199 CENPJQ9HC77 1338 aaPredicted RBP17.68■□□□□ 0.42
SNCA-208ENST00000505199 WAPLQ7Z5K2 1190 aa17.67■□□□□ 0.42
SNCA-208ENST00000505199 PLEKHH1Q9ULM0 1364 aa17.66■□□□□ 0.42
SNCA-208ENST00000505199 UBAP1LF5GYI3 381 aa17.65■□□□□ 0.42
SNCA-208ENST00000505199 SLAIN2Q9P270 581 aa17.64■□□□□ 0.41
SNCA-208ENST00000505199 MST1RQ04912 1400 aa17.64■□□□□ 0.41
SNCA-208ENST00000505199 ANKARQ7Z5J8 1434 aa17.64■□□□□ 0.41
SNCA-208ENST00000505199 QRICH2Q9H0J4 1663 aa17.63■□□□□ 0.41
SNCA-208ENST00000505199 FMN2Q9NZ56 1722 aa17.63■□□□□ 0.41
SNCA-208ENST00000505199 RBM33Q96EV2 1170 aaKnown RBP17.62■□□□□ 0.41
SNCA-208ENST00000505199 WASLO00401 505 aaPredicted RBP17.6■□□□□ 0.41
SNCA-208ENST00000505199 ZEB1P37275 1124 aaPredicted RBP17.6■□□□□ 0.41
SNCA-208ENST00000505199 PUS7Q96PZ0 661 aaKnown RBP17.6■□□□□ 0.41
SNCA-208ENST00000505199 USP47Q96K76 1375 aa17.6■□□□□ 0.41
SNCA-208ENST00000505199 C1orf167Q5SNV9 1468 aa17.6■□□□□ 0.41
SNCA-208ENST00000505199 TULP4Q9NRJ4 1543 aa17.6■□□□□ 0.41
SNCA-208ENST00000505199 EVC2Q86UK5 1308 aa17.57■□□□□ 0.4
SNCA-208ENST00000505199 ROBO1Q9Y6N7 1651 aa17.57■□□□□ 0.4
SNCA-208ENST00000505199 ITSN1Q15811 1721 aa17.56■□□□□ 0.4
SNCA-208ENST00000505199 KIF1AQ12756 1690 aa17.56■□□□□ 0.4
SNCA-208ENST00000505199 SAFB2Q14151 953 aaKnown RBP eCLIP17.56■□□□□ 0.4
SNCA-208ENST00000505199 MINK1Q8N4C8 1332 aaPredicted RBP17.55■□□□□ 0.4
SNCA-208ENST00000505199 AHDC1Q5TGY3 1603 aaPredicted RBP17.54■□□□□ 0.4
SNCA-208ENST00000505199 EIF4G2P78344 907 aaKnown RBP eCLIP17.54■□□□□ 0.4
SNCA-208ENST00000505199 ATP7BP35670 1465 aa17.54■□□□□ 0.4
SNCA-208ENST00000505199 ST20-MTHFSA0A0A6YYL1 179 aa17.53■□□□□ 0.4
SNCA-208ENST00000505199 BRINP3Q76B58 766 aa17.53■□□□□ 0.4
SNCA-208ENST00000505199 TESK2Q96S53 571 aa17.53■□□□□ 0.4
SNCA-208ENST00000505199 ATAD2Q6PL18 1390 aa17.53■□□□□ 0.4
SNCA-208ENST00000505199 NHSL1Q5SYE7 1610 aa17.52■□□□□ 0.4
SNCA-208ENST00000505199 USP32Q8NFA0 1604 aa17.52■□□□□ 0.4
SNCA-208ENST00000505199 CDCA8Q53HL2 280 aa17.52■□□□□ 0.4
SNCA-208ENST00000505199 HIRIP3Q9BW71 556 aaPredicted RBP17.52■□□□□ 0.4
SNCA-208ENST00000505199 CDK19Q9BWU1 502 aa17.52■□□□□ 0.4
SNCA-208ENST00000505199 CCDC61Q9Y6R9 512 aa17.52■□□□□ 0.4
SNCA-208ENST00000505199 TOPAZ1Q8N9V7 1692 aa17.51■□□□□ 0.39
SNCA-208ENST00000505199 NINLQ9Y2I6 1382 aa17.51■□□□□ 0.39
SNCA-208ENST00000505199 NPHP3Q7Z494 1330 aa17.5■□□□□ 0.39
SNCA-208ENST00000505199 PIP4K2BP78356 416 aa17.5■□□□□ 0.39
SNCA-208ENST00000505199 TMF1P82094 1093 aa17.49■□□□□ 0.39
SNCA-208ENST00000505199 SRPK2P78362 688 aaKnown RBP17.48■□□□□ 0.39
SNCA-208ENST00000505199 ESCO1Q5FWF5 840 aa17.48■□□□□ 0.39
SNCA-208ENST00000505199 NUDT16Q96DE0 195 aaKnown RBP17.48■□□□□ 0.39
SNCA-208ENST00000505199 BRD4O60885 1362 aaPredicted RBP17.48■□□□□ 0.39
SNCA-208ENST00000505199 PLEKHG3A1L390 1219 aa17.47■□□□□ 0.39
SNCA-208ENST00000505199 PHF8Q9UPP1 1060 aa17.47■□□□□ 0.39
SNCA-208ENST00000505199 POLR3AO14802 1390 aaPredicted RBP17.47■□□□□ 0.39
SNCA-208ENST00000505199 RGPD8O14715 1765 aaPredicted RBP17.47■□□□□ 0.39
SNCA-208ENST00000505199 PRR36Q9H6K5 1346 aa17.47■□□□□ 0.39
SNCA-208ENST00000505199 SCAF1Q9H7N4 1312 aaKnown RBP17.47■□□□□ 0.39
SNCA-208ENST00000505199 ORAI2Q96SN7 254 aa17.46■□□□□ 0.39
SNCA-208ENST00000505199 SOS2Q07890 1332 aaPredicted RBP17.46■□□□□ 0.38
SNCA-208ENST00000505199 PHLPP1O60346 1717 aa17.44■□□□□ 0.38
SNCA-208ENST00000505199 COL16A1Q07092 1604 aaPredicted RBP17.44■□□□□ 0.38
SNCA-208ENST00000505199 PPIP5K1Q6PFW1 1433 aa17.43■□□□□ 0.38
SNCA-208ENST00000505199 PXDNQ92626 1479 aa17.43■□□□□ 0.38
SNCA-208ENST00000505199 HSPA5P11021 654 aaKnown RBP17.42■□□□□ 0.38
SNCA-208ENST00000505199 PSME1Q06323 249 aa17.42■□□□□ 0.38
SNCA-208ENST00000505199 LRRC59Q96AG4 307 aaKnown RBP17.42■□□□□ 0.38
SNCA-208ENST00000505199 CABP2Q9NPB3 220 aa17.42■□□□□ 0.38
SNCA-208ENST00000505199 SBNO1A3KN83 1393 aa17.41■□□□□ 0.38
SNCA-208ENST00000505199 ILDR1Q86SU0 546 aaPredicted RBP17.41■□□□□ 0.38
SNCA-208ENST00000505199 ZNF692Q9BU19 519 aaPredicted RBP17.41■□□□□ 0.38
SNCA-208ENST00000505199 NUTM2FA1L443 756 aa17.4■□□□□ 0.38
SNCA-208ENST00000505199 FOXO3O43524 673 aa17.4■□□□□ 0.38
SNCA-208ENST00000505199 HSPA1LP34931 641 aa17.4■□□□□ 0.38
SNCA-208ENST00000505199 DISP3Q9P2K9 1392 aa17.4■□□□□ 0.38
SNCA-208ENST00000505199 JCADQ9P266 1359 aa17.39■□□□□ 0.37
SNCA-208ENST00000505199 SHPRHQ149N8 1683 aa17.39■□□□□ 0.37
SNCA-208ENST00000505199 CPSF1Q10570 1443 aaKnown RBP17.38■□□□□ 0.37
SNCA-208ENST00000505199 NGDNQ8NEJ9 315 aaKnown RBP17.38■□□□□ 0.37
SNCA-208ENST00000505199 CABP1Q9NZU7 370 aa17.37■□□□□ 0.37
SNCA-208ENST00000505199 ACEP12821 1306 aa17.37■□□□□ 0.37
SNCA-208ENST00000505199 ARHGEF10O15013 1369 aa17.37■□□□□ 0.37
SNCA-208ENST00000505199 AKAP12Q02952 1782 aa17.36■□□□□ 0.37
SNCA-208ENST00000505199 TERF2IPQ9NYB0 399 aa17.36■□□□□ 0.37
SNCA-208ENST00000505199 COL22A1Q8NFW1 1626 aaPredicted RBP17.36■□□□□ 0.37
SNCA-208ENST00000505199 TRPM3Q9HCF6 1732 aaPredicted RBP17.35■□□□□ 0.37
SNCA-208ENST00000505199 KRT28Q7Z3Y7 464 aa17.35■□□□□ 0.37
SNCA-208ENST00000505199 PMFBP1Q8TBY8 1022 aa17.35■□□□□ 0.37
SNCA-208ENST00000505199 SPATA31A6Q5VVP1 1343 aa17.35■□□□□ 0.37
SNCA-208ENST00000505199 USP6P35125 1406 aa17.35■□□□□ 0.37
SNCA-208ENST00000505199 TNS3Q68CZ2 1445 aa17.35■□□□□ 0.37
SNCA-208ENST00000505199 SPATA31A3Q5VYP0 1347 aa17.34■□□□□ 0.37
SNCA-208ENST00000505199 MON2Q7Z3U7 1717 aa17.33■□□□□ 0.37
SNCA-208ENST00000505199 SSH2Q76I76 1423 aa17.33■□□□□ 0.36
SNCA-208ENST00000505199 ANKRD36BQ8N2N9 1353 aa17.33■□□□□ 0.36
SNCA-208ENST00000505199 ALS2Q96Q42 1657 aa17.32■□□□□ 0.36
SNCA-208ENST00000505199 CD163L1Q9NR16 1453 aa17.32■□□□□ 0.36
SNCA-208ENST00000505199 HDGFL2Q7Z4V5 671 aaPredicted RBP17.32■□□□□ 0.36
SNCA-208ENST00000505199 PNPLA6Q8IY17 1366 aa17.31■□□□□ 0.36
SNCA-208ENST00000505199 TTC21AQ8NDW8 1320 aa17.31■□□□□ 0.36
SNCA-208ENST00000505199 MED1Q15648 1581 aaPredicted RBP17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms