RNA–Protein interactions for RNA: ENST00000502612.5

NEDD4-203, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene NEDD4, Length 652 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-203ENST00000502612 MTMR14Q8NCE2 650 aa12.47□□□□□ -0.41
NEDD4-203ENST00000502612 PPP4CP60510 307 aa12.46□□□□□ -0.41
NEDD4-203ENST00000502612 MTMR2Q13614 643 aa12.46□□□□□ -0.41
NEDD4-203ENST00000502612 CFAP99D6REC4 459 aa12.45□□□□□ -0.42
NEDD4-203ENST00000502612 C6orf229H3BNL8 230 aa12.45□□□□□ -0.42
NEDD4-203ENST00000502612 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
NEDD4-203ENST00000502612 SLC27A5Q9Y2P5 690 aa12.45□□□□□ -0.42
NEDD4-203ENST00000502612 USP17L8P0C7I0 530 aa12.44□□□□□ -0.42
NEDD4-203ENST00000502612 TSR3Q9UJK0 312 aaKnown RBP12.44□□□□□ -0.42
NEDD4-203ENST00000502612 POTEGQ6S5H5 508 aa12.43□□□□□ -0.42
NEDD4-203ENST00000502612 TSC1Q92574 1164 aa12.43□□□□□ -0.42
NEDD4-203ENST00000502612 WBP1LQ9NX94 342 aa12.43□□□□□ -0.42
NEDD4-203ENST00000502612 CTDSPL2Q05D32 466 aa12.42□□□□□ -0.42
NEDD4-203ENST00000502612 NECTIN2Q92692 538 aa12.42□□□□□ -0.42
NEDD4-203ENST00000502612 COG6Q9Y2V7 657 aa12.42□□□□□ -0.42
NEDD4-203ENST00000502612 ARID3CA6NKF2 412 aa12.41□□□□□ -0.42
NEDD4-203ENST00000502612 BLOC1S3Q6QNY0 202 aa12.41□□□□□ -0.42
NEDD4-203ENST00000502612 CDAN1Q8IWY9 1227 aa12.41□□□□□ -0.42
NEDD4-203ENST00000502612 KCTD12Q96CX2 325 aaKnown RBP12.41□□□□□ -0.42
NEDD4-203ENST00000502612 C1orf115Q9H7X2 142 aa12.41□□□□□ -0.42
NEDD4-203ENST00000502612 POTEMA6NI47 508 aa12.4□□□□□ -0.42
NEDD4-203ENST00000502612 A6NJR5 290 aa12.4□□□□□ -0.42
NEDD4-203ENST00000502612 THSD4Q6ZMP0 1018 aa12.4□□□□□ -0.42
NEDD4-203ENST00000502612 RNF19BQ6ZMZ0 732 aa12.4□□□□□ -0.42
NEDD4-203ENST00000502612 HMX1Q9NP08 348 aaPredicted RBP12.39□□□□□ -0.43
NEDD4-203ENST00000502612 PRR7Q8TB68 274 aa12.38□□□□□ -0.43
NEDD4-203ENST00000502612 PRR14Q9BWN1 585 aa12.38□□□□□ -0.43
NEDD4-203ENST00000502612 PCDHB3Q9Y5E6 796 aa12.38□□□□□ -0.43
NEDD4-203ENST00000502612 TRAK2O60296 914 aa12.37□□□□□ -0.43
NEDD4-203ENST00000502612 PROSER2Q86WR7 435 aaPredicted RBP12.37□□□□□ -0.43
NEDD4-203ENST00000502612 LRRN4Q8WUT4 740 aa12.37□□□□□ -0.43
NEDD4-203ENST00000502612 GDPD2Q9HCC8 539 aa12.36□□□□□ -0.43
NEDD4-203ENST00000502612 RAD21O60216 631 aa12.35□□□□□ -0.43
NEDD4-203ENST00000502612 FNBP4Q8N3X1 1017 aaPredicted RBP12.35□□□□□ -0.43
NEDD4-203ENST00000502612 GJD4Q96KN9 370 aaPredicted RBP12.35□□□□□ -0.43
NEDD4-203ENST00000502612 TBC1D2BQ9UPU7 963 aa12.35□□□□□ -0.43
NEDD4-203ENST00000502612 PER1O15534 1290 aaPredicted RBP12.34□□□□□ -0.43
NEDD4-203ENST00000502612 RETREG3Q86VR2 466 aa12.34□□□□□ -0.43
NEDD4-203ENST00000502612 SCUBE3Q8IX30 993 aa12.34□□□□□ -0.43
NEDD4-203ENST00000502612 HELBQ8NG08 1087 aaPredicted RBP12.34□□□□□ -0.43
NEDD4-203ENST00000502612 Q3C1V9 767 aa12.33□□□□□ -0.44
NEDD4-203ENST00000502612 COPS2P61201 443 aa12.32□□□□□ -0.44
NEDD4-203ENST00000502612 BRICD5Q6PL45 260 aa12.32□□□□□ -0.44
NEDD4-203ENST00000502612 EPS8L1Q8TE68 723 aa12.32□□□□□ -0.44
NEDD4-203ENST00000502612 THAP11Q96EK4 314 aa12.32□□□□□ -0.44
NEDD4-203ENST00000502612 TRIM34Q9BYJ4 488 aa12.32□□□□□ -0.44
NEDD4-203ENST00000502612 APBB1O00213 710 aa12.31□□□□□ -0.44
NEDD4-203ENST00000502612 ABL2P42684 1182 aa12.31□□□□□ -0.44
NEDD4-203ENST00000502612 PTPN5P54829 565 aa12.3□□□□□ -0.44
NEDD4-203ENST00000502612 SOCS7O14512 581 aa12.29□□□□□ -0.44
NEDD4-203ENST00000502612 NR1I2O75469 434 aa12.29□□□□□ -0.44
NEDD4-203ENST00000502612 USB1Q9BQ65 265 aaKnown RBP12.29□□□□□ -0.44
NEDD4-203ENST00000502612 ZNF777Q9ULD5 760 aaPredicted RBP12.29□□□□□ -0.44
NEDD4-203ENST00000502612 GPR37L1O60883 481 aa12.28□□□□□ -0.44
NEDD4-203ENST00000502612 ARID3AQ99856 593 aa12.28□□□□□ -0.44
NEDD4-203ENST00000502612 TLL1O43897 1013 aa12.27□□□□□ -0.45
NEDD4-203ENST00000502612 FMNL1O95466 1100 aaPredicted RBP12.27□□□□□ -0.45
NEDD4-203ENST00000502612 SALL2Q9Y467 1007 aaPredicted RBP12.26□□□□□ -0.45
NEDD4-203ENST00000502612 NR6A1Q15406 480 aa12.25□□□□□ -0.45
NEDD4-203ENST00000502612 PRDM9Q9NQV7 894 aa12.25□□□□□ -0.45
NEDD4-203ENST00000502612 NDUFB9Q9Y6M9 179 aa12.25□□□□□ -0.45
NEDD4-203ENST00000502612 IRF5Q13568 498 aa12.23□□□□□ -0.45
NEDD4-203ENST00000502612 DESI1Q6ICB0 168 aa12.23□□□□□ -0.45
NEDD4-203ENST00000502612 FAM160A2Q8N612 972 aaPredicted RBP12.23□□□□□ -0.45
NEDD4-203ENST00000502612 MTRQ99707 1265 aa12.23□□□□□ -0.45
NEDD4-203ENST00000502612 ZNF330Q9Y3S2 320 aaPredicted RBP12.23□□□□□ -0.45
NEDD4-203ENST00000502612 POM121CA8CG34 1229 aa12.22□□□□□ -0.45
NEDD4-203ENST00000502612 LYPD8Q6UX82 237 aa12.22□□□□□ -0.45
NEDD4-203ENST00000502612 SPSB2Q99619 263 aa12.22□□□□□ -0.45
NEDD4-203ENST00000502612 JUNDP17535 347 aa12.21□□□□□ -0.45
NEDD4-203ENST00000502612 CCDC82Q8N4S0 544 aa12.21□□□□□ -0.45
NEDD4-203ENST00000502612 MYT1LQ9UL68 1186 aa12.21□□□□□ -0.45
NEDD4-203ENST00000502612 ZNF516Q92618 1163 aa12.2□□□□□ -0.46
NEDD4-203ENST00000502612 PRM3Q9NNZ6 103 aa12.2□□□□□ -0.46
NEDD4-203ENST00000502612 ZPR1O75312 459 aa12.19□□□□□ -0.46
NEDD4-203ENST00000502612 MAP10Q9P2G4 905 aa12.19□□□□□ -0.46
NEDD4-203ENST00000502612 MSS51Q4VC12 460 aa12.18□□□□□ -0.46
NEDD4-203ENST00000502612 TJAP1Q5JTD0 557 aa12.18□□□□□ -0.46
NEDD4-203ENST00000502612 NYAP1Q6ZVC0 841 aa12.17□□□□□ -0.46
NEDD4-203ENST00000502612 DXOO77932 396 aaKnown RBP12.16□□□□□ -0.46
NEDD4-203ENST00000502612 F12P00748 615 aaPredicted RBP12.16□□□□□ -0.46
NEDD4-203ENST00000502612 PLSCR2Q9NRY7 297 aa12.16□□□□□ -0.46
NEDD4-203ENST00000502612 ADH1BP00325 375 aa12.15□□□□□ -0.46
NEDD4-203ENST00000502612 VAC14Q08AM6 782 aa12.14□□□□□ -0.47
NEDD4-203ENST00000502612 PTPRNQ16849 979 aa12.14□□□□□ -0.47
NEDD4-203ENST00000502612 NKX2-3Q8TAU0 364 aa12.13□□□□□ -0.47
NEDD4-203ENST00000502612 ARXQ96QS3 562 aa12.13□□□□□ -0.47
NEDD4-203ENST00000502612 IL21Q9HBE4 155 aa12.13□□□□□ -0.47
NEDD4-203ENST00000502612 MMP16P51512 607 aa12.12□□□□□ -0.47
NEDD4-203ENST00000502612 WWC1Q8IX03 1113 aa12.12□□□□□ -0.47
NEDD4-203ENST00000502612 CTHP32929 405 aa12.11□□□□□ -0.47
NEDD4-203ENST00000502612 ADAMTS19Q8TE59 1207 aa12.11□□□□□ -0.47
NEDD4-203ENST00000502612 NUDT12Q9BQG2 462 aa12.11□□□□□ -0.47
NEDD4-203ENST00000502612 CCNYL3P0C7X3 344 aa12.1□□□□□ -0.47
NEDD4-203ENST00000502612 GLMNQ92990 594 aa12.1□□□□□ -0.47
NEDD4-203ENST00000502612 SPNS2Q8IVW8 549 aa12.09□□□□□ -0.47
NEDD4-203ENST00000502612 RNF166Q96A37 237 aaPredicted RBP12.08□□□□□ -0.48
NEDD4-203ENST00000502612 SLC6A16Q9GZN6 736 aa12.08□□□□□ -0.48
NEDD4-203ENST00000502612 CALR3Q96L12 384 aaKnown RBP12.07□□□□□ -0.48
NEDD4-203ENST00000502612 FKBPLQ9UIM3 349 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms