RNA–Protein interactions for RNA: ENST00000498325.5

HMGXB4-208, Transcript of HMG-box containing 4, human

TSL 3

Gene HMGXB4, Length 867 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGXB4-208	ENST00000498325	TOR4A	Q9NXH8	423 aa		9.36	□□□□□ -0.91
HMGXB4-208	ENST00000498325	GMPR2	Q9P2T1	348 aa	Known RBP	9.36	□□□□□ -0.91
HMGXB4-208	ENST00000498325	ZNF608	Q9ULD9	1512 aa	Predicted RBP	9.36	□□□□□ -0.91
HMGXB4-208	ENST00000498325	KCNV2	Q8TDN2	545 aa		9.35	□□□□□ -0.91
HMGXB4-208	ENST00000498325	PXYLP1	Q8TE99	480 aa		9.35	□□□□□ -0.91
HMGXB4-208	ENST00000498325	PEG3	Q9GZU2	1588 aa		9.35	□□□□□ -0.91
HMGXB4-208	ENST00000498325	FANCD2	Q9BXW9	1451 aa		9.34	□□□□□ -0.91
HMGXB4-208	ENST00000498325	FCF1	Q9Y324	198 aa	Known RBP	9.34	□□□□□ -0.91
HMGXB4-208	ENST00000498325	URB2	Q14146	1524 aa	Known RBP	9.34	□□□□□ -0.91
HMGXB4-208	ENST00000498325	CTC1	Q2NKJ3	1217 aa		9.33	□□□□□ -0.92
HMGXB4-208	ENST00000498325	RSF1	Q96T23	1441 aa	Predicted RBP	9.31	□□□□□ -0.92
HMGXB4-208	ENST00000498325	MORN1	Q5T089	497 aa		9.3	□□□□□ -0.92
HMGXB4-208	ENST00000498325	METTL3	Q86U44	580 aa	Known RBP	9.3	□□□□□ -0.92
HMGXB4-208	ENST00000498325	STK17A	Q9UEE5	414 aa		9.3	□□□□□ -0.92
HMGXB4-208	ENST00000498325	TTC24	A2A3L6	582 aa	Predicted RBP	9.29	□□□□□ -0.92
HMGXB4-208	ENST00000498325	SMCP	P49901	116 aa	Predicted RBP	9.29	□□□□□ -0.92
HMGXB4-208	ENST00000498325	RDH13	Q8NBN7	331 aa		9.29	□□□□□ -0.92
HMGXB4-208	ENST00000498325	THAP11	Q96EK4	314 aa		9.29	□□□□□ -0.92
HMGXB4-208	ENST00000498325	FMNL1	O95466	1100 aa	Predicted RBP	9.28	□□□□□ -0.92
HMGXB4-208	ENST00000498325	NFX1	Q12986	1120 aa	Known RBP	9.28	□□□□□ -0.92
HMGXB4-208	ENST00000498325	ZBTB24	O43167	697 aa	Predicted RBP	9.27	□□□□□ -0.93
HMGXB4-208	ENST00000498325	ATP6V1A	P38606	617 aa		9.27	□□□□□ -0.93
HMGXB4-208	ENST00000498325	INSM1	Q01101	510 aa	Predicted RBP	9.27	□□□□□ -0.93
HMGXB4-208	ENST00000498325	FUT2	Q10981	343 aa		9.27	□□□□□ -0.93
HMGXB4-208	ENST00000498325	FAM160A2	Q8N612	972 aa	Predicted RBP	9.27	□□□□□ -0.93
HMGXB4-208	ENST00000498325	WIPF1	O43516	503 aa		9.26	□□□□□ -0.93
HMGXB4-208	ENST00000498325	DAXX	Q9UER7	740 aa	Predicted RBP	9.26	□□□□□ -0.93
HMGXB4-208	ENST00000498325	SLC27A5	Q9Y2P5	690 aa		9.26	□□□□□ -0.93
HMGXB4-208	ENST00000498325	HIC1	Q14526	733 aa		9.25	□□□□□ -0.93
HMGXB4-208	ENST00000498325	PRDM9	Q9NQV7	894 aa		9.25	□□□□□ -0.93
HMGXB4-208	ENST00000498325	MROH2B	Q7Z745	1585 aa		9.24	□□□□□ -0.93
HMGXB4-208	ENST00000498325	DDX11L8	A8MPP1	907 aa		9.24	□□□□□ -0.93
HMGXB4-208	ENST00000498325	SUPT5H	O00267	1087 aa	Known RBP	9.24	□□□□□ -0.93
HMGXB4-208	ENST00000498325	TSHZ2	Q9NRE2	1034 aa		9.24	□□□□□ -0.93
HMGXB4-208	ENST00000498325	IFT140	Q96RY7	1462 aa		9.23	□□□□□ -0.93
HMGXB4-208	ENST00000498325	SALL2	Q9Y467	1007 aa	Predicted RBP	9.23	□□□□□ -0.93
HMGXB4-208	ENST00000498325	CHD1	O14646	1710 aa		9.22	□□□□□ -0.93
HMGXB4-208	ENST00000498325	SEMA3E	O15041	775 aa		9.22	□□□□□ -0.93
HMGXB4-208	ENST00000498325	BRICD5	Q6PL45	260 aa		9.22	□□□□□ -0.93
HMGXB4-208	ENST00000498325	ATP13A2	Q9NQ11	1180 aa		9.22	□□□□□ -0.93
HMGXB4-208	ENST00000498325	WNT7A	O00755	349 aa		9.21	□□□□□ -0.94
HMGXB4-208	ENST00000498325	SMPD1	P17405	629 aa		9.21	□□□□□ -0.94
HMGXB4-208	ENST00000498325	AMER1	Q5JTC6	1135 aa	Predicted RBP	9.21	□□□□□ -0.94
HMGXB4-208	ENST00000498325	SNIP1	Q8TAD8	396 aa	Known RBP	9.21	□□□□□ -0.94
HMGXB4-208	ENST00000498325	CFTR	P13569	1480 aa		9.21	□□□□□ -0.94
HMGXB4-208	ENST00000498325	SNRPB	P14678	240 aa	Known RBP	9.2	□□□□□ -0.94
HMGXB4-208	ENST00000498325	GCGR	P47871	477 aa		9.2	□□□□□ -0.94
HMGXB4-208	ENST00000498325	MSS51	Q4VC12	460 aa		9.2	□□□□□ -0.94
HMGXB4-208	ENST00000498325	P3H3	Q8IVL6	736 aa		9.2	□□□□□ -0.94
HMGXB4-208	ENST00000498325	EIF4G3	O43432	1585 aa	Known RBP	9.2	□□□□□ -0.94
HMGXB4-208	ENST00000498325	TERT	O14746	1132 aa	Known RBP	9.19	□□□□□ -0.94
HMGXB4-208	ENST00000498325	FECH	P22830	423 aa		9.19	□□□□□ -0.94
HMGXB4-208	ENST00000498325	SULF1	Q8IWU6	871 aa		9.19	□□□□□ -0.94
HMGXB4-208	ENST00000498325	SENP2	Q9HC62	589 aa		9.19	□□□□□ -0.94
HMGXB4-208	ENST00000498325	GNPAT	O15228	680 aa		9.18	□□□□□ -0.94
HMGXB4-208	ENST00000498325	AQR	O60306	1485 aa	Known RBP eCLIP	9.18	□□□□□ -0.94	2e-9	■■■■■ 47.9
HMGXB4-208	ENST00000498325	TRIM32	Q13049	653 aa		9.18	□□□□□ -0.94
HMGXB4-208	ENST00000498325	RNF19B	Q6ZMZ0	732 aa		9.18	□□□□□ -0.94
HMGXB4-208	ENST00000498325	MRGPRX2	Q96LB1	330 aa		9.18	□□□□□ -0.94
HMGXB4-208	ENST00000498325	TRIM47	Q96LD4	638 aa		9.18	□□□□□ -0.94
HMGXB4-208	ENST00000498325		J3QL48	77 aa		9.17	□□□□□ -0.94
HMGXB4-208	ENST00000498325	NLRP7	Q8WX94	980 aa		9.17	□□□□□ -0.94
HMGXB4-208	ENST00000498325	RTN4	Q9NQC3	1192 aa	Known RBP	9.17	□□□□□ -0.94
HMGXB4-208	ENST00000498325	GRIPAP1	Q4V328	841 aa		9.16	□□□□□ -0.94
HMGXB4-208	ENST00000498325	RBM26	Q5T8P6	1007 aa	Known RBP	9.16	□□□□□ -0.94
HMGXB4-208	ENST00000498325	LCE2C	Q5TA81	110 aa		9.16	□□□□□ -0.94
HMGXB4-208	ENST00000498325	CLASP1	Q7Z460	1538 aa		9.15	□□□□□ -0.94
HMGXB4-208	ENST00000498325	KIFC2	Q96AC6	838 aa		9.14	□□□□□ -0.95
HMGXB4-208	ENST00000498325	REPIN1	Q9BWE0	567 aa	Known RBP	9.14	□□□□□ -0.95
HMGXB4-208	ENST00000498325		Q3C1V9	767 aa		9.13	□□□□□ -0.95
HMGXB4-208	ENST00000498325	HPS1	Q92902	700 aa		9.13	□□□□□ -0.95
HMGXB4-208	ENST00000498325	GPR37	O15354	613 aa		9.12	□□□□□ -0.95
HMGXB4-208	ENST00000498325	MMP16	P51512	607 aa		9.12	□□□□□ -0.95
HMGXB4-208	ENST00000498325	FBXO41	Q8TF61	875 aa		9.12	□□□□□ -0.95
HMGXB4-208	ENST00000498325	GAPVD1	Q14C86	1478 aa		9.12	□□□□□ -0.95
HMGXB4-208	ENST00000498325	SMYD5	Q6GMV2	418 aa		9.11	□□□□□ -0.95
HMGXB4-208	ENST00000498325	PHOX2B	Q99453	314 aa		9.11	□□□□□ -0.95
HMGXB4-208	ENST00000498325	SLC16A10	Q8TF71	515 aa		9.09	□□□□□ -0.95
HMGXB4-208	ENST00000498325	TOPBP1	Q92547	1522 aa		9.09	□□□□□ -0.95
HMGXB4-208	ENST00000498325	TESPA1	A2RU30	521 aa	Predicted RBP	9.08	□□□□□ -0.96
HMGXB4-208	ENST00000498325	FAM181B	A6NEQ2	426 aa		9.08	□□□□□ -0.96
HMGXB4-208	ENST00000498325	RC3H1	Q5TC82	1133 aa	Known RBP	9.08	□□□□□ -0.96
HMGXB4-208	ENST00000498325	CCDC24	Q8N4L8	307 aa		9.08	□□□□□ -0.96
HMGXB4-208	ENST00000498325	USB1	Q9BQ65	265 aa	Known RBP	9.08	□□□□□ -0.96
HMGXB4-208	ENST00000498325	LMTK3	Q96Q04	1460 aa		9.08	□□□□□ -0.96
HMGXB4-208	ENST00000498325	DXO	O77932	396 aa	Known RBP	9.07	□□□□□ -0.96
HMGXB4-208	ENST00000498325	WIZ	O95785	1651 aa		9.07	□□□□□ -0.96
HMGXB4-208	ENST00000498325	ERCC6L2	Q5T890	1561 aa		9.06	□□□□□ -0.96
HMGXB4-208	ENST00000498325	HECW2	Q9P2P5	1572 aa		9.06	□□□□□ -0.96
HMGXB4-208	ENST00000498325	TARBP1	Q13395	1621 aa	Known RBP	9.05	□□□□□ -0.96
HMGXB4-208	ENST00000498325	WNT7B	P56706	349 aa		9.05	□□□□□ -0.96
HMGXB4-208	ENST00000498325	ILDR2	Q71H61	639 aa		9.05	□□□□□ -0.96
HMGXB4-208	ENST00000498325	SOCS7	O14512	581 aa		9.04	□□□□□ -0.96
HMGXB4-208	ENST00000498325	ALDH1A1	P00352	501 aa		9.04	□□□□□ -0.96
HMGXB4-208	ENST00000498325	SKOR1	P84550	965 aa		9.04	□□□□□ -0.96
HMGXB4-208	ENST00000498325	NXF1	Q9UBU9	619 aa	Known RBP	9.04	□□□□□ -0.96
HMGXB4-208	ENST00000498325	SYNJ1	O43426	1573 aa		9.03	□□□□□ -0.96
HMGXB4-208	ENST00000498325	SNAPC4	Q5SXM2	1469 aa		9.03	□□□□□ -0.96
HMGXB4-208	ENST00000498325	KDM4A	O75164	1064 aa		9.03	□□□□□ -0.96
HMGXB4-208	ENST00000498325	CHMP7	Q8WUX9	453 aa	Predicted RBP	9.03	□□□□□ -0.96

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms