RNA–Protein interactions for RNA: ENST00000497597.5

TRAPPC12-223, Transcript of trafficking protein particle complex 12, human

TSL 2

Gene TRAPPC12, Length 3,401 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC12-223	ENST00000497597	PZP	P20742	1482 aa		13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	BLM	P54132	1417 aa	Predicted RBP	13.15	□□□□□ -0.3
TRAPPC12-223	ENST00000497597	BAG4	O95429	457 aa	Known RBP	13.14	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ERBIN	Q96RT1	1412 aa		13.14	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZMYM4	Q5VZL5	1548 aa		13.14	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	C17orf53	Q8N3J3	647 aa	Predicted RBP	13.14	□□□□□ -0.31
TRAPPC12-223	ENST00000497597		K7ELQ4	463 aa	Predicted RBP	13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZBTB22	O15209	634 aa		13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	CDCA8	Q53HL2	280 aa		13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	PLEKHD1	A6NEE1	506 aa		13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	KIAA2012	Q0VF49	1180 aa		13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	MVP	Q14764	893 aa	Known RBP	13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	RALGAPB	Q86X10	1494 aa		13.13	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	NUP160	Q12769	1436 aa		13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	NLRP1	Q9C000	1473 aa		13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	EPRS	P07814	1512 aa	Known RBP	13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	CEP170	Q5SW79	1584 aa		13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	RAB3GAP1	Q15042	981 aa		13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZSCAN23	Q3MJ62	389 aa		13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	KDM5C	P41229	1560 aa		13.12	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ROCK1	Q13464	1354 aa		13.11	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	EXOSC9	Q06265	439 aa	Known RBP	13.11	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	PRG4	Q92954	1404 aa	Predicted RBP	13.11	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	CSPP1	Q1MSJ5	1256 aa		13.11	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	PTMS	P20962	102 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZNF521	Q96K83	1311 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	GRIN2A	Q12879	1464 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	PKP1	Q13835	747 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	PPP4R3B	Q5MIZ7	849 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	PLEKHH2	Q8IVE3	1493 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	CGN	Q9P2M7	1197 aa	Known RBP	13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	SASS6	Q6UVJ0	657 aa		13.1	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	KLHL40	Q2TBA0	621 aa		13.09	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	CAMSAP2	Q08AD1	1489 aa		13.09	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	SAFB2	Q14151	953 aa	Known RBP eCLIP	13.09	□□□□□ -0.31	9e-7	■■■□□ 15.2
TRAPPC12-223	ENST00000497597	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.09	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZNF692	Q9BU19	519 aa	Predicted RBP	13.09	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	ZKSCAN5	Q9Y2L8	839 aa		13.09	□□□□□ -0.31
TRAPPC12-223	ENST00000497597	CTTNBP2	Q8WZ74	1663 aa		13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TMEM57	Q8N5G2	664 aa		13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CIZ1	Q9ULV3	898 aa	Predicted RBP	13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	NOB1	Q9ULX3	412 aa	Known RBP	13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	DYNC1I1	O14576	645 aa		13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CFAP53	Q96M91	514 aa		13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	GDPD2	Q9HCC8	539 aa		13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CCDC39	Q9UFE4	941 aa		13.08	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	PPP1R9B	Q96SB3	815 aa		13.07	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TCOF1	Q13428	1488 aa	Known RBP	13.07	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	POLR1A	O95602	1720 aa	Predicted RBP	13.07	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	SMC5	Q8IY18	1101 aa		13.07	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	RUNDC1	Q96C34	613 aa		13.07	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	DDX19B	Q9UMR2	479 aa		13.07	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TRIM27	P14373	513 aa		13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	MTERF4	Q7Z6M4	381 aa	Known RBP	13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TTC12	Q9H892	705 aa	Predicted RBP	13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	NOL7	Q9UMY1	257 aa	Known RBP	13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	LRRIQ1	Q96JM4	1722 aa		13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	AK9	Q5TCS8	1911 aa		13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	MTHFS	P49914	203 aa		13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	SSH1	Q8WYL5	1049 aa		13.06	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	KIAA0586	Q9BVV6	1533 aa		13.05	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	GCC2	Q8IWJ2	1684 aa		13.05	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	ZGPAT	Q8N5A5	531 aa	Known RBP	13.05	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TRERF1	Q96PN7	1200 aa		13.05	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CCDC94	Q9BW85	323 aa	Predicted RBP	13.05	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	GTF2E1	P29083	439 aa	Predicted RBP	13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TBC1D9	Q6ZT07	1266 aa		13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CHD1L	Q86WJ1	897 aa		13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CHAF1A	Q13111	956 aa	Predicted RBP	13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	SPC24	Q8NBT2	197 aa		13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	TRMT2A	Q8IZ69	625 aa	Known RBP	13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	USP25	Q9UHP3	1055 aa		13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	NAP1L2	Q9ULW6	460 aa	Predicted RBP	13.04	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	NUCB2	P80303	420 aa		13.03	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	13.03	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	KIF16B	Q96L93	1317 aa		13.03	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	13.03	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	CHMP3	Q9Y3E7	222 aa		13.02	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	KIF14	Q15058	1648 aa		13.02	□□□□□ -0.32
TRAPPC12-223	ENST00000497597	ZSCAN20	P17040	1043 aa	Predicted RBP	13.02	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	PDCL2	Q8N4E4	241 aa		13.02	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	MBD5	Q9P267	1494 aa		13.02	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ATF7IP	Q6VMQ6	1270 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	SLC24A1	O60721	1099 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	DTNB	O60941	627 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	ATP2B3	Q16720	1220 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	SLC12A5	Q9H2X9	1139 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	TRAK1	Q9UPV9	953 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	KIF3A	Q9Y496	699 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	STAC3	Q96MF2	364 aa		13.01	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	U2AF2	P26368	475 aa	Known RBP eCLIP	13	□□□□□ -0.33	2e-7	■■□□□ 13
TRAPPC12-223	ENST00000497597	SNX21	Q969T3	373 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	CHMP4A	Q9BY43	222 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	TMEM63C	Q9P1W3	806 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	NSFL1C	Q9UNZ2	370 aa	Known RBP	13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	DMTN	Q08495	405 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	RIMBP3C	A6NJZ7	1639 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	RIMBP3B	A6NNM3	1639 aa		13	□□□□□ -0.33
TRAPPC12-223	ENST00000497597	RIMBP3	Q9UFD9	1639 aa		13	□□□□□ -0.33

Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms