RNA–Protein interactions for RNA: ENST00000494323.5

PTCD3-219, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 540 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-219ENST00000494323 ADGRG1Q9Y653 693 aa9.07□□□□□ -0.96
PTCD3-219ENST00000494323 PRG4Q92954 1404 aaPredicted RBP9.06□□□□□ -0.96
PTCD3-219ENST00000494323 DNAJB2P25686 324 aa9.06□□□□□ -0.96
PTCD3-219ENST00000494323 KDM4CQ9H3R0 1056 aa9.06□□□□□ -0.96
PTCD3-219ENST00000494323 GPBP1L1Q9HC44 474 aaPredicted RBP9.06□□□□□ -0.96
PTCD3-219ENST00000494323 FAM69CQ0P6D2 419 aa9.05□□□□□ -0.96
PTCD3-219ENST00000494323 TOP2BQ02880 1626 aa9.05□□□□□ -0.96
PTCD3-219ENST00000494323 ADAMTS12P58397 1594 aa9.04□□□□□ -0.96
PTCD3-219ENST00000494323 A0A0G2JS52 829 aa9.04□□□□□ -0.96
PTCD3-219ENST00000494323 KCNC4Q03721 635 aa9.04□□□□□ -0.96
PTCD3-219ENST00000494323 TTLL12Q14166 644 aaPredicted RBP9.04□□□□□ -0.96
PTCD3-219ENST00000494323 FAM161AQ3B820 660 aa9.04□□□□□ -0.96
PTCD3-219ENST00000494323 METTL3Q86U44 580 aaKnown RBP9.04□□□□□ -0.96
PTCD3-219ENST00000494323 PARP9Q8IXQ6 854 aa9.04□□□□□ -0.96
PTCD3-219ENST00000494323 BIVM-ERCC5R4GMW8 1640 aa9.02□□□□□ -0.96
PTCD3-219ENST00000494323 CLCN1P35523 988 aa9.02□□□□□ -0.97
PTCD3-219ENST00000494323 PXYLP1Q8TE99 480 aa9.02□□□□□ -0.97
PTCD3-219ENST00000494323 TMEM134Q9H6X4 195 aa9.02□□□□□ -0.97
PTCD3-219ENST00000494323 TTBK1Q5TCY1 1321 aaPredicted RBP9.02□□□□□ -0.97
PTCD3-219ENST00000494323 SHROOM2Q13796 1616 aa9.02□□□□□ -0.97
PTCD3-219ENST00000494323 ERICH3Q5RHP9 1530 aa9.01□□□□□ -0.97
PTCD3-219ENST00000494323 RCCD1A6NED2 376 aa9.01□□□□□ -0.97
PTCD3-219ENST00000494323 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9□□□□□ -0.97
PTCD3-219ENST00000494323 APLP1P51693 650 aa9□□□□□ -0.97
PTCD3-219ENST00000494323 PHOX2BQ99453 314 aa9□□□□□ -0.97
PTCD3-219ENST00000494323 KIF13AQ9H1H9 1805 aa8.99□□□□□ -0.97
PTCD3-219ENST00000494323 MDM2Q00987 491 aaPredicted RBP8.99□□□□□ -0.97
PTCD3-219ENST00000494323 GIGYF2Q6Y7W6 1299 aaKnown RBP8.99□□□□□ -0.97
PTCD3-219ENST00000494323 MTRQ99707 1265 aa8.99□□□□□ -0.97
PTCD3-219ENST00000494323 PRR14Q9BWN1 585 aa8.99□□□□□ -0.97
PTCD3-219ENST00000494323 GPCPD1Q9NPB8 672 aa8.99□□□□□ -0.97
PTCD3-219ENST00000494323 DDRGK1Q96HY6 314 aa8.98□□□□□ -0.97
PTCD3-219ENST00000494323 TMUB1Q9BVT8 246 aa8.98□□□□□ -0.97
PTCD3-219ENST00000494323 IL21Q9HBE4 155 aa8.98□□□□□ -0.97
PTCD3-219ENST00000494323 IGF1RP08069 1367 aa8.98□□□□□ -0.97
PTCD3-219ENST00000494323 RGS20O76081 388 aa8.97□□□□□ -0.97
PTCD3-219ENST00000494323 TJAP1Q5JTD0 557 aa8.97□□□□□ -0.97
PTCD3-219ENST00000494323 IL27Q8NEV9 243 aa8.96□□□□□ -0.98
PTCD3-219ENST00000494323 REPIN1Q9BWE0 567 aaKnown RBP8.95□□□□□ -0.98
PTCD3-219ENST00000494323 FAM117AQ9C073 453 aa8.95□□□□□ -0.98
PTCD3-219ENST00000494323 ABCC10Q5T3U5 1492 aa8.95□□□□□ -0.98
PTCD3-219ENST00000494323 KMT5BQ4FZB7 885 aa8.94□□□□□ -0.98
PTCD3-219ENST00000494323 COPS2P61201 443 aa8.93□□□□□ -0.98
PTCD3-219ENST00000494323 FAM217BQ9NTX9 383 aaPredicted RBP8.93□□□□□ -0.98
PTCD3-219ENST00000494323 PCDHB3Q9Y5E6 796 aa8.93□□□□□ -0.98
PTCD3-219ENST00000494323 TSPOAP1O95153 1857 aa8.92□□□□□ -0.98
PTCD3-219ENST00000494323 KIAA0586Q9BVV6 1533 aa8.92□□□□□ -0.98
PTCD3-219ENST00000494323 CFHP08603 1231 aa8.92□□□□□ -0.98
PTCD3-219ENST00000494323 MS4A1P11836 297 aa8.92□□□□□ -0.98
PTCD3-219ENST00000494323 SSTR3P32745 418 aaPredicted RBP8.92□□□□□ -0.98
PTCD3-219ENST00000494323 ERICH6Q7L0X2 663 aa8.92□□□□□ -0.98
PTCD3-219ENST00000494323 NLRP7Q8WX94 980 aa8.92□□□□□ -0.98
PTCD3-219ENST00000494323 ADCY10Q96PN6 1610 aa8.91□□□□□ -0.98
PTCD3-219ENST00000494323 RUSC2Q8N2Y8 1516 aa8.91□□□□□ -0.98
PTCD3-219ENST00000494323 PTPRGP23470 1445 aa8.91□□□□□ -0.98
PTCD3-219ENST00000494323 KIF27Q86VH2 1401 aa8.91□□□□□ -0.98
PTCD3-219ENST00000494323 RSPH4AQ5TD94 716 aa8.91□□□□□ -0.98
PTCD3-219ENST00000494323 ZNF516Q92618 1163 aa8.91□□□□□ -0.98
PTCD3-219ENST00000494323 CARMIL1Q5VZK9 1371 aa8.9□□□□□ -0.98
PTCD3-219ENST00000494323 PLEKHG3A1L390 1219 aa8.9□□□□□ -0.98
PTCD3-219ENST00000494323 MAPKBP1O60336 1514 aa8.9□□□□□ -0.99
PTCD3-219ENST00000494323 SLC10A3P09131 477 aa8.89□□□□□ -0.99
PTCD3-219ENST00000494323 SULF1Q8IWU6 871 aa8.89□□□□□ -0.99
PTCD3-219ENST00000494323 DIP2BQ9P265 1576 aa8.89□□□□□ -0.99
PTCD3-219ENST00000494323 ACTN4O43707 911 aaKnown RBP8.88□□□□□ -0.99
PTCD3-219ENST00000494323 ZPR1O75312 459 aa8.88□□□□□ -0.99
PTCD3-219ENST00000494323 BLOC1S3Q6QNY0 202 aa8.88□□□□□ -0.99
PTCD3-219ENST00000494323 RDH13Q8NBN7 331 aa8.87□□□□□ -0.99
PTCD3-219ENST00000494323 BEGAINQ9BUH8 593 aa8.87□□□□□ -0.99
PTCD3-219ENST00000494323 GOPCQ9HD26 462 aa8.87□□□□□ -0.99
PTCD3-219ENST00000494323 DDX11L8A8MPP1 907 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 PPP1R18Q6NYC8 613 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 C14orf37Q86TY3 774 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 NKX2-3Q8TAU0 364 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 RSPH6AQ9H0K4 717 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 KDM6BO15054 1643 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 TNIKQ9UKE5 1360 aa8.86□□□□□ -0.99
PTCD3-219ENST00000494323 CARMIL2Q6F5E8 1435 aa8.85□□□□□ -0.99
PTCD3-219ENST00000494323 GGCXP38435 758 aa8.84□□□□□ -0.99
PTCD3-219ENST00000494323 DIXDC1Q155Q3 683 aa8.84□□□□□ -0.99
PTCD3-219ENST00000494323 ASXL2Q76L83 1435 aa8.84□□□□□ -0.99
PTCD3-219ENST00000494323 CUL7Q14999 1698 aa8.84□□□□□ -0.99
PTCD3-219ENST00000494323 CD46P15529 392 aa8.83□□□□□ -1
PTCD3-219ENST00000494323 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.83□□□□□ -1
PTCD3-219ENST00000494323 ABCC2Q92887 1545 aa8.82□□□□□ -1
PTCD3-219ENST00000494323 TLL1O43897 1013 aa8.82□□□□□ -1
PTCD3-219ENST00000494323 NR1I2O75469 434 aa8.82□□□□□ -1
PTCD3-219ENST00000494323 SH3D19Q5HYK7 790 aa8.82□□□□□ -1
PTCD3-219ENST00000494323 IRX2Q9BZI1 471 aaPredicted RBP8.82□□□□□ -1
PTCD3-219ENST00000494323 UACAQ9BZF9 1416 aa8.81□□□□□ -1
PTCD3-219ENST00000494323 PCMTD1Q96MG8 357 aaPredicted RBP8.81□□□□□ -1
PTCD3-219ENST00000494323 PUS10Q3MIT2 529 aaKnown RBP8.8□□□□□ -1
PTCD3-219ENST00000494323 PLB1Q6P1J6 1458 aa8.8□□□□□ -1
PTCD3-219ENST00000494323 COL17A1Q9UMD9 1497 aaPredicted RBP8.8□□□□□ -1
PTCD3-219ENST00000494323 SKIV2LQ15477 1246 aaKnown RBP8.79□□□□□ -1
PTCD3-219ENST00000494323 DISP1Q96F81 1524 aa8.79□□□□□ -1
PTCD3-219ENST00000494323 IQGAP2Q13576 1575 aa8.78□□□□□ -1
PTCD3-219ENST00000494323 GCGRP47871 477 aa8.78□□□□□ -1
PTCD3-219ENST00000494323 FUT2Q10981 343 aa8.78□□□□□ -1
PTCD3-219ENST00000494323 NUTM1Q86Y26 1132 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 69.8 ms