RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 HMOX1P09601 288 aa23.25■■□□□ 1.31
COL27A1-207ENST00000494090 MTHFSP49914 203 aa23.25■■□□□ 1.31
COL27A1-207ENST00000494090 TCP11L2Q8N4U5 519 aa23.25■■□□□ 1.31
COL27A1-207ENST00000494090 APPP05067 770 aa23.24■■□□□ 1.31
COL27A1-207ENST00000494090 CCDC70Q6NSX1 233 aa23.24■■□□□ 1.31
COL27A1-207ENST00000494090 CABP2Q9NPB3 220 aa23.24■■□□□ 1.31
COL27A1-207ENST00000494090 PRXQ9BXM0 1461 aa23.24■■□□□ 1.31
COL27A1-207ENST00000494090 FAM69CQ0P6D2 419 aa23.23■■□□□ 1.31
COL27A1-207ENST00000494090 GRIN2BQ13224 1484 aa23.23■■□□□ 1.31
COL27A1-207ENST00000494090 KIAA1107Q9UPP5 1409 aa23.23■■□□□ 1.31
COL27A1-207ENST00000494090 ERICH2A1L162 156 aa23.22■■□□□ 1.31
COL27A1-207ENST00000494090 IPO7O95373 1038 aaKnown RBP23.22■■□□□ 1.31
COL27A1-207ENST00000494090 ARHGAP5Q13017 1502 aa23.22■■□□□ 1.31
COL27A1-207ENST00000494090 SMC3Q9UQE7 1217 aa23.22■■□□□ 1.31
COL27A1-207ENST00000494090 SCAPERQ9BY12 1400 aa23.21■■□□□ 1.31
COL27A1-207ENST00000494090 TNNT3P45378 269 aaPredicted RBP23.21■■□□□ 1.31
COL27A1-207ENST00000494090 MEX3CQ5U5Q3 659 aaKnown RBP23.21■■□□□ 1.31
COL27A1-207ENST00000494090 PDE3AQ14432 1141 aa23.21■■□□□ 1.31
COL27A1-207ENST00000494090 SYTL4Q96C24 671 aaPredicted RBP23.21■■□□□ 1.31
COL27A1-207ENST00000494090 PDE4CQ08493 712 aa23.19■■□□□ 1.3
COL27A1-207ENST00000494090 AMER1Q5JTC6 1135 aaPredicted RBP23.19■■□□□ 1.3
COL27A1-207ENST00000494090 TMEM132EQ6IEE7 984 aa23.19■■□□□ 1.3
COL27A1-207ENST00000494090 CFAP70Q5T0N1 1121 aa23.19■■□□□ 1.3
COL27A1-207ENST00000494090 NBPF8Q3BBV2 869 aa23.19■■□□□ 1.3
COL27A1-207ENST00000494090 BICD2Q8TD16 824 aa23.18■■□□□ 1.3
COL27A1-207ENST00000494090 SYNJ2O15056 1496 aa23.17■■□□□ 1.3
COL27A1-207ENST00000494090 DHX16O60231 1041 aaKnown RBP23.17■■□□□ 1.3
COL27A1-207ENST00000494090 TIAM1Q13009 1591 aa23.17■■□□□ 1.3
COL27A1-207ENST00000494090 PNISRQ8TF01 805 aaKnown RBP23.16■■□□□ 1.3
COL27A1-207ENST00000494090 VPS37CA5D8V6 355 aaPredicted RBP23.16■■□□□ 1.3
COL27A1-207ENST00000494090 MRE11P49959 708 aa23.16■■□□□ 1.3
COL27A1-207ENST00000494090 NBPF1Q3BBV0 1214 aa23.16■■□□□ 1.3
COL27A1-207ENST00000494090 TOP2BQ02880 1626 aa23.16■■□□□ 1.3
COL27A1-207ENST00000494090 GPS2Q13227 327 aa23.16■■□□□ 1.3
COL27A1-207ENST00000494090 SAFBQ15424 915 aaKnown RBP eCLIP23.16■■□□□ 1.3
COL27A1-207ENST00000494090 NFXL1Q6ZNB6 911 aa23.16■■□□□ 1.3
COL27A1-207ENST00000494090 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.15■■□□□ 1.3
COL27A1-207ENST00000494090 RBM33Q96EV2 1170 aaKnown RBP23.15■■□□□ 1.3
COL27A1-207ENST00000494090 RIC3Q7Z5B4 369 aa23.15■■□□□ 1.3
COL27A1-207ENST00000494090 SMG6Q86US8 1419 aaKnown RBP23.15■■□□□ 1.3
COL27A1-207ENST00000494090 PDZRN3Q9UPQ7 1066 aa23.14■■□□□ 1.3
COL27A1-207ENST00000494090 RAD21O60216 631 aa23.14■■□□□ 1.3
COL27A1-207ENST00000494090 C9orf84Q5VXU9 1444 aa23.14■■□□□ 1.3
COL27A1-207ENST00000494090 UBTFL1P0CB47 393 aaPredicted RBP23.14■■□□□ 1.29
COL27A1-207ENST00000494090 FAM43AQ8N2R8 423 aa23.13■■□□□ 1.29
COL27A1-207ENST00000494090 AKNAQ7Z591 1439 aa23.13■■□□□ 1.29
COL27A1-207ENST00000494090 GPRASP1Q5JY77 1395 aa23.13■■□□□ 1.29
COL27A1-207ENST00000494090 NLRP2Q9NX02 1062 aa23.12■■□□□ 1.29
COL27A1-207ENST00000494090 EXOSC9Q06265 439 aaKnown RBP23.12■■□□□ 1.29
COL27A1-207ENST00000494090 RALYLQ86SE5 291 aaKnown RBP23.12■■□□□ 1.29
COL27A1-207ENST00000494090 NINLQ9Y2I6 1382 aa23.12■■□□□ 1.29
COL27A1-207ENST00000494090 AFAP1Q8N556 730 aa23.12■■□□□ 1.29
COL27A1-207ENST00000494090 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.12■■□□□ 1.291e-7■■■■■ 28.6
COL27A1-207ENST00000494090 PCMTD1Q96MG8 357 aaPredicted RBP23.11■■□□□ 1.29
COL27A1-207ENST00000494090 GNAI3P08754 354 aa23.11■■□□□ 1.29
COL27A1-207ENST00000494090 SASS6Q6UVJ0 657 aa23.11■■□□□ 1.29
COL27A1-207ENST00000494090 GAS2L2Q8NHY3 880 aa23.11■■□□□ 1.29
COL27A1-207ENST00000494090 GCC1Q96CN9 775 aa23.11■■□□□ 1.29
COL27A1-207ENST00000494090 ZNF592Q92610 1267 aa23.1■■□□□ 1.29
COL27A1-207ENST00000494090 CCDC43Q96MW1 224 aaKnown RBP23.1■■□□□ 1.29
COL27A1-207ENST00000494090 CCAR2Q8N163 923 aaKnown RBP23.09■■□□□ 1.29
COL27A1-207ENST00000494090 NLRP6P59044 892 aa23.09■■□□□ 1.29
COL27A1-207ENST00000494090 PLEKHH2Q8IVE3 1493 aa23.09■■□□□ 1.29
COL27A1-207ENST00000494090 PRKAR2BP31323 418 aa23.08■■□□□ 1.29
COL27A1-207ENST00000494090 ZSCAN21Q9Y5A6 473 aaPredicted RBP23.08■■□□□ 1.29
COL27A1-207ENST00000494090 TRAK2O60296 914 aa23.08■■□□□ 1.28
COL27A1-207ENST00000494090 CT47B1P0C2W7 299 aaPredicted RBP23.08■■□□□ 1.28
COL27A1-207ENST00000494090 BACH2Q9BYV9 841 aa23.08■■□□□ 1.28
COL27A1-207ENST00000494090 CCDC73Q6ZRK6 1079 aa23.07■■□□□ 1.28
COL27A1-207ENST00000494090 FBXW7Q969H0 707 aa23.07■■□□□ 1.28
COL27A1-207ENST00000494090 HECW1Q76N89 1606 aa23.07■■□□□ 1.28
COL27A1-207ENST00000494090 CCDC30Q5VVM6 783 aa23.07■■□□□ 1.28
COL27A1-207ENST00000494090 ANO8Q9HCE9 1232 aaPredicted RBP23.07■■□□□ 1.28
COL27A1-207ENST00000494090 TROQ12816 1431 aaPredicted RBP23.07■■□□□ 1.28
COL27A1-207ENST00000494090 CNTROBQ8N137 903 aa23.07■■□□□ 1.28
COL27A1-207ENST00000494090 WDR63Q8IWG1 891 aa23.06■■□□□ 1.28
COL27A1-207ENST00000494090 NASPP49321 788 aaPredicted RBP23.06■■□□□ 1.28
COL27A1-207ENST00000494090 BRMS1Q9HCU9 246 aa23.06■■□□□ 1.28
COL27A1-207ENST00000494090 WDR97A6NE52 1622 aa23.06■■□□□ 1.28
COL27A1-207ENST00000494090 PSMA5P28066 241 aa23.06■■□□□ 1.28
COL27A1-207ENST00000494090 BCAR3O75815 825 aa23.06■■□□□ 1.28
COL27A1-207ENST00000494090 ERBINQ96RT1 1412 aa23.05■■□□□ 1.28
COL27A1-207ENST00000494090 MCM2P49736 904 aa23.05■■□□□ 1.28
COL27A1-207ENST00000494090 RABEP1Q15276 862 aa23.05■■□□□ 1.28
COL27A1-207ENST00000494090 TWISTNBQ3B726 338 aaPredicted RBP23.05■■□□□ 1.28
COL27A1-207ENST00000494090 DAPK1P53355 1430 aa23.05■■□□□ 1.28
COL27A1-207ENST00000494090 XBP1P17861 261 aa23.05■■□□□ 1.28
COL27A1-207ENST00000494090 NEUROD6Q96NK8 337 aa23.05■■□□□ 1.28
COL27A1-207ENST00000494090 PLEKHO1Q53GL0 409 aaPredicted RBP23.04■■□□□ 1.28
COL27A1-207ENST00000494090 NOB1Q9ULX3 412 aaKnown RBP23.04■■□□□ 1.28
COL27A1-207ENST00000494090 CCDC39Q9UFE4 941 aa23.04■■□□□ 1.28
COL27A1-207ENST00000494090 WASHC4Q2M389 1173 aa23.03■■□□□ 1.28
COL27A1-207ENST00000494090 PRG4Q92954 1404 aaPredicted RBP23.03■■□□□ 1.28
COL27A1-207ENST00000494090 SUPT6HQ7KZ85 1726 aaKnown RBP23.02■■□□□ 1.28
COL27A1-207ENST00000494090 CLASRPQ8N2M8 674 aaKnown RBP23.02■■□□□ 1.28
COL27A1-207ENST00000494090 MBD3O95983 291 aa23.02■■□□□ 1.28
COL27A1-207ENST00000494090 FAM13BQ9NYF5 915 aa23.02■■□□□ 1.28
COL27A1-207ENST00000494090 HOMER1Q86YM7 354 aa23.02■■□□□ 1.28
COL27A1-207ENST00000494090 CWC22Q9HCG8 908 aaKnown RBP23.02■■□□□ 1.28
COL27A1-207ENST00000494090 LETM1O95202 739 aaPredicted RBP23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms