RNA–Protein interactions for RNA: ENST00000493732.5

NPHP3-209, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,933 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-209ENST00000493732 TMEM132EQ6IEE7 984 aa12.62□□□□□ -0.39
NPHP3-209ENST00000493732 NKTRP30414 1462 aaKnown RBP12.62□□□□□ -0.39
NPHP3-209ENST00000493732 APAF1O14727 1248 aa12.61□□□□□ -0.39
NPHP3-209ENST00000493732 ARHGEF28Q8N1W1 1705 aaKnown RBP12.61□□□□□ -0.39
NPHP3-209ENST00000493732 YEATS2Q9ULM3 1422 aa12.61□□□□□ -0.39
NPHP3-209ENST00000493732 PREX1Q8TCU6 1659 aa12.61□□□□□ -0.39
NPHP3-209ENST00000493732 MSH5O43196 834 aa12.6□□□□□ -0.39
NPHP3-209ENST00000493732 SLC12A5Q9H2X9 1139 aa12.6□□□□□ -0.39
NPHP3-209ENST00000493732 AGLP35573 1532 aa12.6□□□□□ -0.39
NPHP3-209ENST00000493732 TMEM131LA2VDJ0 1609 aa12.59□□□□□ -0.39
NPHP3-209ENST00000493732 CRBNQ96SW2 442 aa12.59□□□□□ -0.39
NPHP3-209ENST00000493732 ATAD2Q6PL18 1390 aa12.59□□□□□ -0.39
NPHP3-209ENST00000493732 CYB5RLQ6IPT4 315 aa12.58□□□□□ -0.39
NPHP3-209ENST00000493732 CCDC146Q8IYE0 955 aa12.58□□□□□ -0.39
NPHP3-209ENST00000493732 RUNDC1Q96C34 613 aa12.58□□□□□ -0.39
NPHP3-209ENST00000493732 PLIN1O60240 522 aa12.58□□□□□ -0.4
NPHP3-209ENST00000493732 TULP4Q9NRJ4 1543 aa12.58□□□□□ -0.4
NPHP3-209ENST00000493732 FAM69CQ0P6D2 419 aa12.57□□□□□ -0.4
NPHP3-209ENST00000493732 CENPQQ7L2Z9 268 aaPredicted RBP12.57□□□□□ -0.4
NPHP3-209ENST00000493732 DIP2BQ9P265 1576 aa12.57□□□□□ -0.4
NPHP3-209ENST00000493732 CCDC27Q2M243 656 aa12.56□□□□□ -0.4
NPHP3-209ENST00000493732 TERF2IPQ9NYB0 399 aa12.56□□□□□ -0.4
NPHP3-209ENST00000493732 AAMPQ13685 434 aa12.56□□□□□ -0.4
NPHP3-209ENST00000493732 WDR63Q8IWG1 891 aa12.56□□□□□ -0.4
NPHP3-209ENST00000493732 WWC1Q8IX03 1113 aa12.55□□□□□ -0.4
NPHP3-209ENST00000493732 IPO9Q96P70 1041 aaKnown RBP12.55□□□□□ -0.4
NPHP3-209ENST00000493732 ABCC11Q96J66 1382 aa12.55□□□□□ -0.4
NPHP3-209ENST00000493732 YTHDC2Q9H6S0 1430 aaKnown RBP12.55□□□□□ -0.4
NPHP3-209ENST00000493732 PDE3AQ14432 1141 aa12.54□□□□□ -0.4
NPHP3-209ENST00000493732 STAG3Q9UJ98 1225 aa12.54□□□□□ -0.4
NPHP3-209ENST00000493732 NOP58Q9Y2X3 529 aaKnown RBP12.54□□□□□ -0.4
NPHP3-209ENST00000493732 MED14O60244 1454 aa12.54□□□□□ -0.4
NPHP3-209ENST00000493732 SHPRHQ149N8 1683 aa12.54□□□□□ -0.4
NPHP3-209ENST00000493732 MTHFSP49914 203 aa12.54□□□□□ -0.4
NPHP3-209ENST00000493732 SRPK2P78362 688 aaKnown RBP12.54□□□□□ -0.4
NPHP3-209ENST00000493732 POGKQ9P215 609 aa12.54□□□□□ -0.4
NPHP3-209ENST00000493732 PTPRMP28827 1452 aa12.53□□□□□ -0.4
NPHP3-209ENST00000493732 RIMBP3CA6NJZ7 1639 aa12.53□□□□□ -0.4
NPHP3-209ENST00000493732 RIMBP3BA6NNM3 1639 aa12.53□□□□□ -0.4
NPHP3-209ENST00000493732 RIMBP3Q9UFD9 1639 aa12.53□□□□□ -0.4
NPHP3-209ENST00000493732 CLTCQ00610 1675 aaKnown RBP12.53□□□□□ -0.4
NPHP3-209ENST00000493732 PDE4AP27815 886 aa12.52□□□□□ -0.4
NPHP3-209ENST00000493732 NUTM2DQ5VT03 806 aaPredicted RBP12.52□□□□□ -0.4
NPHP3-209ENST00000493732 BACH2Q9BYV9 841 aa12.52□□□□□ -0.4
NPHP3-209ENST00000493732 PNNQ9H307 717 aaKnown RBP12.52□□□□□ -0.4
NPHP3-209ENST00000493732 CABP2Q9NPB3 220 aa12.52□□□□□ -0.4
NPHP3-209ENST00000493732 HDGFL2Q7Z4V5 671 aaPredicted RBP12.52□□□□□ -0.41
NPHP3-209ENST00000493732 KDM2BQ8NHM5 1336 aa12.52□□□□□ -0.41
NPHP3-209ENST00000493732 TCP11L2Q8N4U5 519 aa12.51□□□□□ -0.41
NPHP3-209ENST00000493732 ZBTB47Q9UFB7 747 aaPredicted RBP12.51□□□□□ -0.41
NPHP3-209ENST00000493732 IQSEC2Q5JU85 1478 aa12.51□□□□□ -0.41
NPHP3-209ENST00000493732 DLC1Q96QB1 1528 aa12.51□□□□□ -0.41
NPHP3-209ENST00000493732 ALKQ9UM73 1620 aa12.51□□□□□ -0.41
NPHP3-209ENST00000493732 MYO5BQ9ULV0 1848 aa12.51□□□□□ -0.41
NPHP3-209ENST00000493732 CT47B1P0C2W7 299 aaPredicted RBP12.5□□□□□ -0.41
NPHP3-209ENST00000493732 HDGFP51858 240 aaKnown RBP12.5□□□□□ -0.41
NPHP3-209ENST00000493732 C20orf194Q5TEA3 1177 aa12.5□□□□□ -0.41
NPHP3-209ENST00000493732 MYH16Q9H6N6 1097 aa12.5□□□□□ -0.41
NPHP3-209ENST00000493732 STK26Q9P289 416 aa12.5□□□□□ -0.41
NPHP3-209ENST00000493732 SPATA31D1Q6ZQQ2 1576 aa12.5□□□□□ -0.41
NPHP3-209ENST00000493732 A0A1W2PP64 1363 aa12.5□□□□□ -0.41
NPHP3-209ENST00000493732 TNNT2P45379 298 aaPredicted RBP12.5□□□□□ -0.41
NPHP3-209ENST00000493732 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.5□□□□□ -0.41
NPHP3-209ENST00000493732 PRAM1Q96QH2 718 aa12.5□□□□□ -0.41
NPHP3-209ENST00000493732 SPINK5Q9NQ38 1064 aaPredicted RBP12.49□□□□□ -0.41
NPHP3-209ENST00000493732 U2AF1L5P0DN76 240 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-209ENST00000493732 CANXP27824 592 aaKnown RBP12.48□□□□□ -0.41
NPHP3-209ENST00000493732 U2AF1Q01081 240 aaKnown RBP eCLIP12.48□□□□□ -0.41
NPHP3-209ENST00000493732 FBXO31Q5XUX0 539 aaPredicted RBP12.48□□□□□ -0.41
NPHP3-209ENST00000493732 A2ML1A8K2U0 1454 aa12.48□□□□□ -0.41
NPHP3-209ENST00000493732 ANKRD26Q9UPS8 1709 aa12.47□□□□□ -0.41
NPHP3-209ENST00000493732 ESF1Q9H501 851 aaKnown RBP12.47□□□□□ -0.41
NPHP3-209ENST00000493732 MINK1Q8N4C8 1332 aaPredicted RBP12.47□□□□□ -0.41
NPHP3-209ENST00000493732 SAFB2Q14151 953 aaKnown RBP eCLIP12.47□□□□□ -0.41
NPHP3-209ENST00000493732 DDRGK1Q96HY6 314 aa12.47□□□□□ -0.41
NPHP3-209ENST00000493732 ARHGEF40Q8TER5 1519 aa12.47□□□□□ -0.41
NPHP3-209ENST00000493732 CDK19Q9BWU1 502 aa12.46□□□□□ -0.42
NPHP3-209ENST00000493732 RIMS2Q9UQ26 1411 aa12.46□□□□□ -0.42
NPHP3-209ENST00000493732 ADGRB2O60241 1585 aa12.46□□□□□ -0.42
NPHP3-209ENST00000493732 ATP7BP35670 1465 aa12.45□□□□□ -0.42
NPHP3-209ENST00000493732 BCAR3O75815 825 aa12.45□□□□□ -0.42
NPHP3-209ENST00000493732 SIRT1Q96EB6 747 aa12.45□□□□□ -0.42
NPHP3-209ENST00000493732 MAPK8IP3Q9UPT6 1336 aa12.45□□□□□ -0.42
NPHP3-209ENST00000493732 FYB1O15117 783 aa12.45□□□□□ -0.42
NPHP3-209ENST00000493732 IL16Q14005 1332 aa12.44□□□□□ -0.42
NPHP3-209ENST00000493732 TSPOAP1O95153 1857 aa12.44□□□□□ -0.42
NPHP3-209ENST00000493732 RARSP54136 660 aaKnown RBP12.44□□□□□ -0.42
NPHP3-209ENST00000493732 NEUROD2Q15784 382 aa12.44□□□□□ -0.42
NPHP3-209ENST00000493732 FAM161AQ3B820 660 aa12.43□□□□□ -0.42
NPHP3-209ENST00000493732 CLUAP1Q96AJ1 413 aa12.43□□□□□ -0.42
NPHP3-209ENST00000493732 DMRT2Q9Y5R5 561 aa12.43□□□□□ -0.42
NPHP3-209ENST00000493732 CD163L1Q9NR16 1453 aa12.43□□□□□ -0.42
NPHP3-209ENST00000493732 PMFBP1Q8TBY8 1022 aa12.43□□□□□ -0.42
NPHP3-209ENST00000493732 GGNBP2Q9H3C7 697 aa12.43□□□□□ -0.42
NPHP3-209ENST00000493732 PNPLA6Q8IY17 1366 aa12.42□□□□□ -0.42
NPHP3-209ENST00000493732 NLRP1Q9C000 1473 aa12.42□□□□□ -0.42
NPHP3-209ENST00000493732 DIAPH1O60610 1272 aaKnown RBP12.42□□□□□ -0.42
NPHP3-209ENST00000493732 NEFMP07197 916 aa12.42□□□□□ -0.42
NPHP3-209ENST00000493732 COL3A1P02461 1466 aaPredicted RBP12.42□□□□□ -0.42
NPHP3-209ENST00000493732 RRP7AQ9Y3A4 280 aaKnown RBP12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms