RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 CENPJQ9HC77 1338 aaPredicted RBP9.86□□□□□ -0.83
SMARCE1-211ENST00000493660 DDX10Q13206 875 aaKnown RBP9.85□□□□□ -0.83
SMARCE1-211ENST00000493660 CDCA8Q53HL2 280 aa9.85□□□□□ -0.83
SMARCE1-211ENST00000493660 TXNDC2Q86VQ3 553 aa9.85□□□□□ -0.83
SMARCE1-211ENST00000493660 MYOM1P52179 1685 aa9.85□□□□□ -0.83
SMARCE1-211ENST00000493660 ABCC11Q96J66 1382 aa9.85□□□□□ -0.83
SMARCE1-211ENST00000493660 NEFLP07196 543 aa9.85□□□□□ -0.83
SMARCE1-211ENST00000493660 DISP3Q9P2K9 1392 aa9.84□□□□□ -0.83
SMARCE1-211ENST00000493660 LTKP29376 864 aa9.84□□□□□ -0.83
SMARCE1-211ENST00000493660 TMEM132EQ6IEE7 984 aa9.84□□□□□ -0.83
SMARCE1-211ENST00000493660 XRN1Q8IZH2 1706 aaKnown RBP9.84□□□□□ -0.83
SMARCE1-211ENST00000493660 SIRT1Q96EB6 747 aa9.84□□□□□ -0.83
SMARCE1-211ENST00000493660 FAM135BQ49AJ0 1406 aa9.83□□□□□ -0.84
SMARCE1-211ENST00000493660 PIK3R4Q99570 1358 aa9.83□□□□□ -0.84
SMARCE1-211ENST00000493660 TRAK1Q9UPV9 953 aa9.83□□□□□ -0.84
SMARCE1-211ENST00000493660 PUS7Q96PZ0 661 aaKnown RBP9.82□□□□□ -0.84
SMARCE1-211ENST00000493660 TBX22Q9Y458 520 aa9.82□□□□□ -0.84
SMARCE1-211ENST00000493660 CHD2O14647 1828 aaKnown RBP9.82□□□□□ -0.84
SMARCE1-211ENST00000493660 METP08581 1390 aa9.82□□□□□ -0.84
SMARCE1-211ENST00000493660 ANKLE2Q86XL3 938 aa9.82□□□□□ -0.84
SMARCE1-211ENST00000493660 TULP4Q9NRJ4 1543 aa9.82□□□□□ -0.84
SMARCE1-211ENST00000493660 ADGRB2O60241 1585 aa9.81□□□□□ -0.84
SMARCE1-211ENST00000493660 KDM4FA0A1W2PPD8 638 aa9.81□□□□□ -0.84
SMARCE1-211ENST00000493660 PTCH1Q13635 1447 aa9.8□□□□□ -0.84
SMARCE1-211ENST00000493660 BCANQ96GW7 911 aa9.8□□□□□ -0.84
SMARCE1-211ENST00000493660 NPHP4O75161 1426 aaPredicted RBP9.79□□□□□ -0.84
SMARCE1-211ENST00000493660 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.79□□□□□ -0.84
SMARCE1-211ENST00000493660 EVC2Q86UK5 1308 aa9.79□□□□□ -0.84
SMARCE1-211ENST00000493660 NWD1Q149M9 1564 aa9.79□□□□□ -0.84
SMARCE1-211ENST00000493660 GLIPR1L2Q4G1C9 344 aa9.79□□□□□ -0.84
SMARCE1-211ENST00000493660 ILDR1Q86SU0 546 aaPredicted RBP9.78□□□□□ -0.84
SMARCE1-211ENST00000493660 STK26Q9P289 416 aa9.78□□□□□ -0.84
SMARCE1-211ENST00000493660 PTPRUQ92729 1446 aa9.78□□□□□ -0.84
SMARCE1-211ENST00000493660 NINLQ9Y2I6 1382 aa9.78□□□□□ -0.84
SMARCE1-211ENST00000493660 ANP32CO43423 234 aa9.77□□□□□ -0.84
SMARCE1-211ENST00000493660 PRAM1Q96QH2 718 aa9.77□□□□□ -0.84
SMARCE1-211ENST00000493660 POGKQ9P215 609 aa9.77□□□□□ -0.84
SMARCE1-211ENST00000493660 LMTK3Q96Q04 1460 aa9.77□□□□□ -0.85
SMARCE1-211ENST00000493660 POLR3GLQ9BT43 218 aa9.77□□□□□ -0.85
SMARCE1-211ENST00000493660 USP32Q8NFA0 1604 aa9.77□□□□□ -0.85
SMARCE1-211ENST00000493660 SIPA1L2Q9P2F8 1722 aaPredicted RBP9.76□□□□□ -0.85
SMARCE1-211ENST00000493660 KTN1Q86UP2 1357 aaKnown RBP9.76□□□□□ -0.85
SMARCE1-211ENST00000493660 ATAD2Q6PL18 1390 aa9.75□□□□□ -0.85
SMARCE1-211ENST00000493660 SLC26A8Q96RN1 970 aa9.75□□□□□ -0.85
SMARCE1-211ENST00000493660 ROBO2Q9HCK4 1378 aa9.75□□□□□ -0.85
SMARCE1-211ENST00000493660 ITSN1Q15811 1721 aa9.75□□□□□ -0.85
SMARCE1-211ENST00000493660 PLEKHH1Q9ULM0 1364 aa9.74□□□□□ -0.85
SMARCE1-211ENST00000493660 TOPAZ1Q8N9V7 1692 aa9.74□□□□□ -0.85
SMARCE1-211ENST00000493660 STRCQ7RTU9 1775 aa9.74□□□□□ -0.85
SMARCE1-211ENST00000493660 CCER2I3L3R5 266 aa9.74□□□□□ -0.85
SMARCE1-211ENST00000493660 AMOTL2Q9Y2J4 779 aa9.73□□□□□ -0.85
SMARCE1-211ENST00000493660 NPC1L1Q9UHC9 1359 aa9.73□□□□□ -0.85
SMARCE1-211ENST00000493660 NKTRP30414 1462 aaKnown RBP9.73□□□□□ -0.85
SMARCE1-211ENST00000493660 MINK1Q8N4C8 1332 aaPredicted RBP9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 NALCNQ8IZF0 1738 aa9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 FMN2Q9NZ56 1722 aa9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 PER1O15534 1290 aaPredicted RBP9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 AKAP12Q02952 1782 aa9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 CDC42BPGQ6DT37 1551 aa9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 WAPLQ7Z5K2 1190 aa9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 PANK3Q9H999 370 aa9.72□□□□□ -0.85
SMARCE1-211ENST00000493660 ATP7BP35670 1465 aa9.71□□□□□ -0.85
SMARCE1-211ENST00000493660 NCKAP5LQ9HCH0 1330 aa9.71□□□□□ -0.85
SMARCE1-211ENST00000493660 PRKRIP1Q9H875 184 aaPredicted RBP9.71□□□□□ -0.85
SMARCE1-211ENST00000493660 ANKRD26Q9UPS8 1709 aa9.71□□□□□ -0.86
SMARCE1-211ENST00000493660 ANKRD36BQ8N2N9 1353 aa9.71□□□□□ -0.86
SMARCE1-211ENST00000493660 WASLO00401 505 aaPredicted RBP9.71□□□□□ -0.86
SMARCE1-211ENST00000493660 SAFB2Q14151 953 aaKnown RBP eCLIP9.71□□□□□ -0.86
SMARCE1-211ENST00000493660 MON2Q7Z3U7 1717 aa9.71□□□□□ -0.86
SMARCE1-211ENST00000493660 SRPK2P78362 688 aaKnown RBP9.7□□□□□ -0.86
SMARCE1-211ENST00000493660 CDK19Q9BWU1 502 aa9.7□□□□□ -0.86
SMARCE1-211ENST00000493660 KIF20BQ96Q89 1820 aa9.7□□□□□ -0.86
SMARCE1-211ENST00000493660 KCNA6P17658 529 aa9.7□□□□□ -0.86
SMARCE1-211ENST00000493660 RALBP1Q15311 655 aa9.7□□□□□ -0.86
SMARCE1-211ENST00000493660 PARD3Q8TEW0 1356 aa9.69□□□□□ -0.86
SMARCE1-211ENST00000493660 CABP2Q9NPB3 220 aa9.69□□□□□ -0.86
SMARCE1-211ENST00000493660 STRCP1A6NGW2 1772 aa9.69□□□□□ -0.86
SMARCE1-211ENST00000493660 IL27Q8NEV9 243 aa9.68□□□□□ -0.86
SMARCE1-211ENST00000493660 KNSTRNQ9Y448 316 aa9.68□□□□□ -0.86
SMARCE1-211ENST00000493660 ANKARQ7Z5J8 1434 aa9.68□□□□□ -0.86
SMARCE1-211ENST00000493660 CD163L1Q9NR16 1453 aa9.68□□□□□ -0.86
SMARCE1-211ENST00000493660 ADGRL3Q9HAR2 1447 aa9.68□□□□□ -0.86
SMARCE1-211ENST00000493660 NCOA3Q9Y6Q9 1424 aa9.67□□□□□ -0.86
SMARCE1-211ENST00000493660 NSD2O96028 1365 aa9.67□□□□□ -0.86
SMARCE1-211ENST00000493660 RGPD8O14715 1765 aaPredicted RBP9.67□□□□□ -0.86
SMARCE1-211ENST00000493660 NSD3Q9BZ95 1437 aa9.67□□□□□ -0.86
SMARCE1-211ENST00000493660 TERF2IPQ9NYB0 399 aa9.67□□□□□ -0.86
SMARCE1-211ENST00000493660 NRKQ7Z2Y5 1582 aa9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 PPIP5K1Q6PFW1 1433 aa9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 PDE4CQ08493 712 aa9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 AMER1Q5JTC6 1135 aaPredicted RBP9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 TMC1Q8TDI8 760 aa9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 SLC12A5Q9H2X9 1139 aa9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 MYBBP1AQ9BQG0 1328 aaKnown RBP9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 A0A1W2PP64 1363 aa9.66□□□□□ -0.86
SMARCE1-211ENST00000493660 CPSF1Q10570 1443 aaKnown RBP9.65□□□□□ -0.86
SMARCE1-211ENST00000493660 HSPA2P54652 639 aa9.65□□□□□ -0.86
SMARCE1-211ENST00000493660 HDGFL2Q7Z4V5 671 aaPredicted RBP9.65□□□□□ -0.86
SMARCE1-211ENST00000493660 NUDT16Q96DE0 195 aaKnown RBP9.65□□□□□ -0.86
SMARCE1-211ENST00000493660 BRD4O60885 1362 aaPredicted RBP9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms