RNA–Protein interactions for RNA: ENST00000493109.2

COL12A1-209, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5

Gene COL12A1, Length 794 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-209ENST00000493109 GMPR2Q9P2T1 348 aaKnown RBP13.88□□□□□ -0.19
COL12A1-209ENST00000493109 HAP1P54257 671 aaPredicted RBP13.87□□□□□ -0.19
COL12A1-209ENST00000493109 TRIM32Q13049 653 aa13.86□□□□□ -0.19
COL12A1-209ENST00000493109 GRIPAP1Q4V328 841 aa13.86□□□□□ -0.19
COL12A1-209ENST00000493109 AXIN1O15169 862 aa13.85□□□□□ -0.19
COL12A1-209ENST00000493109 DXOO77932 396 aaKnown RBP13.85□□□□□ -0.19
COL12A1-209ENST00000493109 SMCPP49901 116 aaPredicted RBP13.85□□□□□ -0.19
COL12A1-209ENST00000493109 TREML4Q6UXN2 200 aa13.85□□□□□ -0.19
COL12A1-209ENST00000493109 WNT7AO00755 349 aa13.84□□□□□ -0.19
COL12A1-209ENST00000493109 IRF6O14896 467 aa13.84□□□□□ -0.19
COL12A1-209ENST00000493109 KDM4AO75164 1064 aa13.84□□□□□ -0.19
COL12A1-209ENST00000493109 SMPD1P17405 629 aa13.84□□□□□ -0.19
COL12A1-209ENST00000493109 MDM2Q00987 491 aaPredicted RBP13.84□□□□□ -0.19
COL12A1-209ENST00000493109 Q3C1V9 767 aa13.84□□□□□ -0.19
COL12A1-209ENST00000493109 ZBTB24O43167 697 aaPredicted RBP13.83□□□□□ -0.2
COL12A1-209ENST00000493109 CTC1Q2NKJ3 1217 aa13.82□□□□□ -0.2
COL12A1-209ENST00000493109 USB1Q9BQ65 265 aaKnown RBP13.82□□□□□ -0.2
COL12A1-209ENST00000493109 MRGPRX2Q96LB1 330 aa13.81□□□□□ -0.2
COL12A1-209ENST00000493109 TTC24A2A3L6 582 aaPredicted RBP13.8□□□□□ -0.2
COL12A1-209ENST00000493109 GUCA2AQ02747 115 aa13.8□□□□□ -0.2
COL12A1-209ENST00000493109 J3QL48 77 aa13.79□□□□□ -0.2
COL12A1-209ENST00000493109 HOXA2O43364 376 aa13.79□□□□□ -0.2
COL12A1-209ENST00000493109 SNIP1Q8TAD8 396 aaKnown RBP13.78□□□□□ -0.2
COL12A1-209ENST00000493109 CCDC102AQ96A19 550 aa13.78□□□□□ -0.2
COL12A1-209ENST00000493109 SKOR1P84550 965 aa13.77□□□□□ -0.21
COL12A1-209ENST00000493109 MINK1Q8N4C8 1332 aaPredicted RBP13.75□□□□□ -0.21
COL12A1-209ENST00000493109 C11orf95C9JLR9 678 aaPredicted RBP13.75□□□□□ -0.21
COL12A1-209ENST00000493109 SYMPKQ92797 1274 aaKnown RBP13.75□□□□□ -0.21
COL12A1-209ENST00000493109 USP46P62068 366 aa13.74□□□□□ -0.21
COL12A1-209ENST00000493109 LCE2CQ5TA81 110 aa13.72□□□□□ -0.21
COL12A1-209ENST00000493109 HPS1Q92902 700 aa13.72□□□□□ -0.21
COL12A1-209ENST00000493109 ATP13A2Q9NQ11 1180 aa13.72□□□□□ -0.21
COL12A1-209ENST00000493109 FAM217BQ9NTX9 383 aaPredicted RBP13.72□□□□□ -0.21
COL12A1-209ENST00000493109 NFX1Q12986 1120 aaKnown RBP13.71□□□□□ -0.21
COL12A1-209ENST00000493109 CCDC24Q8N4L8 307 aa13.71□□□□□ -0.21
COL12A1-209ENST00000493109 SNRPBP14678 240 aaKnown RBP13.7□□□□□ -0.22
COL12A1-209ENST00000493109 REPIN1Q9BWE0 567 aaKnown RBP13.7□□□□□ -0.22
COL12A1-209ENST00000493109 RC3H1Q5TC82 1133 aaKnown RBP13.69□□□□□ -0.22
COL12A1-209ENST00000493109 GPCPD1Q9NPB8 672 aa13.69□□□□□ -0.22
COL12A1-209ENST00000493109 JUNDP17535 347 aa13.68□□□□□ -0.22
COL12A1-209ENST00000493109 WFS1O76024 890 aa13.67□□□□□ -0.22
COL12A1-209ENST00000493109 PTCRAQ6ISU1 281 aaPredicted RBP13.66□□□□□ -0.22
COL12A1-209ENST00000493109 WNT7BP56706 349 aa13.65□□□□□ -0.22
COL12A1-209ENST00000493109 PCDHGC3Q9UN70 934 aa13.65□□□□□ -0.22
COL12A1-209ENST00000493109 CLCN1P35523 988 aa13.64□□□□□ -0.23
COL12A1-209ENST00000493109 TRIM47Q96LD4 638 aa13.63□□□□□ -0.23
COL12A1-209ENST00000493109 RETREG3Q86VR2 466 aa13.61□□□□□ -0.23
COL12A1-209ENST00000493109 SIAH2O43255 324 aa13.6□□□□□ -0.23
COL12A1-209ENST00000493109 NUDT12Q9BQG2 462 aa13.6□□□□□ -0.23
COL12A1-209ENST00000493109 VSIG10Q8N0Z9 540 aa13.59□□□□□ -0.23
COL12A1-209ENST00000493109 TULP1O00294 542 aaPredicted RBP13.58□□□□□ -0.24
COL12A1-209ENST00000493109 WIPF1O43516 503 aa13.57□□□□□ -0.24
COL12A1-209ENST00000493109 FDX1P10109 184 aa13.57□□□□□ -0.24
COL12A1-209ENST00000493109 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.57□□□□□ -0.24
COL12A1-209ENST00000493109 NUTM1Q86Y26 1132 aa13.57□□□□□ -0.24
COL12A1-209ENST00000493109 ALDH1A1P00352 501 aa13.56□□□□□ -0.24
COL12A1-209ENST00000493109 SENP2Q9HC62 589 aa13.55□□□□□ -0.24
COL12A1-209ENST00000493109 TERTO14746 1132 aaKnown RBP13.54□□□□□ -0.24
COL12A1-209ENST00000493109 SPIRE2Q8WWL2 714 aa13.54□□□□□ -0.24
COL12A1-209ENST00000493109 NDUFV2P19404 249 aa13.53□□□□□ -0.24
COL12A1-209ENST00000493109 SH3BP2P78314 561 aa13.53□□□□□ -0.24
COL12A1-209ENST00000493109 SSTR3P32745 418 aaPredicted RBP13.52□□□□□ -0.25
COL12A1-209ENST00000493109 MOXD2PA6NHM9 499 aa13.51□□□□□ -0.25
COL12A1-209ENST00000493109 C6orf229H3BNL8 230 aa13.51□□□□□ -0.25
COL12A1-209ENST00000493109 TRIM46Q7Z4K8 759 aa13.51□□□□□ -0.25
COL12A1-209ENST00000493109 CCNYL3P0C7X3 344 aa13.5□□□□□ -0.25
COL12A1-209ENST00000493109 BMP1P13497 986 aa13.5□□□□□ -0.25
COL12A1-209ENST00000493109 EHBP1Q8NDI1 1231 aa13.5□□□□□ -0.25
COL12A1-209ENST00000493109 MS4A1P11836 297 aa13.49□□□□□ -0.25
COL12A1-209ENST00000493109 KIFC2Q96AC6 838 aa13.49□□□□□ -0.25
COL12A1-209ENST00000493109 KRI1Q8N9T8 703 aaKnown RBP13.48□□□□□ -0.25
COL12A1-209ENST00000493109 UNC93B1Q9H1C4 597 aa13.47□□□□□ -0.25
COL12A1-209ENST00000493109 PTPRNQ16849 979 aa13.46□□□□□ -0.25
COL12A1-209ENST00000493109 EVA1BQ9NVM1 165 aa13.46□□□□□ -0.25
COL12A1-209ENST00000493109 LINC01559Q495D7 138 aa13.45□□□□□ -0.26
COL12A1-209ENST00000493109 BARGINQ6ZT62 677 aa13.45□□□□□ -0.26
COL12A1-209ENST00000493109 TLL2Q9Y6L7 1015 aa13.45□□□□□ -0.26
COL12A1-209ENST00000493109 AMHR2Q16671 573 aa13.44□□□□□ -0.26
COL12A1-209ENST00000493109 PRR7Q8TB68 274 aa13.43□□□□□ -0.26
COL12A1-209ENST00000493109 BAP1Q92560 729 aa13.43□□□□□ -0.26
COL12A1-209ENST00000493109 STK17AQ9UEE5 414 aa13.43□□□□□ -0.26
COL12A1-209ENST00000493109 CAPN5O15484 640 aaPredicted RBP13.42□□□□□ -0.26
COL12A1-209ENST00000493109 ZMYND10O75800 440 aa13.42□□□□□ -0.26
COL12A1-209ENST00000493109 KCNH2Q12809 1159 aa13.42□□□□□ -0.26
COL12A1-209ENST00000493109 GIGYF2Q6Y7W6 1299 aaKnown RBP13.42□□□□□ -0.26
COL12A1-209ENST00000493109 TTLL12Q14166 644 aaPredicted RBP13.41□□□□□ -0.26
COL12A1-209ENST00000493109 WASF2Q9Y6W5 498 aa13.41□□□□□ -0.26
COL12A1-209ENST00000493109 INSM1Q01101 510 aaPredicted RBP13.4□□□□□ -0.26
COL12A1-209ENST00000493109 MTMR2Q13614 643 aa13.39□□□□□ -0.27
COL12A1-209ENST00000493109 ZNF511Q8NB15 262 aa13.39□□□□□ -0.27
COL12A1-209ENST00000493109 DESI1Q6ICB0 168 aa13.38□□□□□ -0.27
COL12A1-209ENST00000493109 ZC3H15Q8WU90 426 aaKnown RBP13.37□□□□□ -0.27
COL12A1-209ENST00000493109 BEGAINQ9BUH8 593 aa13.37□□□□□ -0.27
COL12A1-209ENST00000493109 NXF1Q9UBU9 619 aaKnown RBP13.37□□□□□ -0.27
COL12A1-209ENST00000493109 LORP23490 312 aaPredicted RBP13.36□□□□□ -0.27
COL12A1-209ENST00000493109 PCDHB15Q9Y5E8 787 aa13.35□□□□□ -0.27
COL12A1-209ENST00000493109 VEGFBP49765 207 aa13.34□□□□□ -0.27
COL12A1-209ENST00000493109 RSBN1LQ6PCB5 846 aaPredicted RBP13.34□□□□□ -0.27
COL12A1-209ENST00000493109 TBC1D2Q9BYX2 928 aa13.34□□□□□ -0.27
COL12A1-209ENST00000493109 CFAP99D6REC4 459 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 98.3 ms