RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 CENPJQ9HC77 1338 aaPredicted RBP14.47□□□□□ -0.09
USP4-214ENST00000491791 IDI1Q13907 227 aa14.47□□□□□ -0.09
USP4-214ENST00000491791 KNSTRNQ9Y448 316 aa14.47□□□□□ -0.09
USP4-214ENST00000491791 PDE3BQ13370 1112 aa14.46□□□□□ -0.09
USP4-214ENST00000491791 CFAP65Q6ZU64 1925 aaKnown RBP14.46□□□□□ -0.09
USP4-214ENST00000491791 QRICH2Q9H0J4 1663 aa14.46□□□□□ -0.1
USP4-214ENST00000491791 USP32Q8NFA0 1604 aa14.45□□□□□ -0.1
USP4-214ENST00000491791 NUDCQ9Y266 331 aa14.45□□□□□ -0.1
USP4-214ENST00000491791 ARHGEF28Q8N1W1 1705 aaKnown RBP14.44□□□□□ -0.1
USP4-214ENST00000491791 PHF23Q9BUL5 403 aaPredicted RBP14.42□□□□□ -0.1
USP4-214ENST00000491791 CHGAP10645 457 aaKnown RBP14.41□□□□□ -0.1
USP4-214ENST00000491791 PPP2R1AP30153 589 aa14.41□□□□□ -0.1
USP4-214ENST00000491791 EID1Q9Y6B2 187 aa14.41□□□□□ -0.1
USP4-214ENST00000491791 MED1Q15648 1581 aaPredicted RBP14.41□□□□□ -0.1
USP4-214ENST00000491791 MYO5BQ9ULV0 1848 aa14.41□□□□□ -0.1
USP4-214ENST00000491791 NINLQ9Y2I6 1382 aa14.4□□□□□ -0.1
USP4-214ENST00000491791 CC2D1BQ5T0F9 858 aaKnown RBP14.4□□□□□ -0.1
USP4-214ENST00000491791 TXNDC2Q86VQ3 553 aa14.39□□□□□ -0.11
USP4-214ENST00000491791 STAG3Q9UJ98 1225 aa14.39□□□□□ -0.11
USP4-214ENST00000491791 LRRC7Q96NW7 1537 aa14.38□□□□□ -0.11
USP4-214ENST00000491791 DLC1Q96QB1 1528 aa14.37□□□□□ -0.11
USP4-214ENST00000491791 TULP4Q9NRJ4 1543 aa14.37□□□□□ -0.11
USP4-214ENST00000491791 CARD14Q9BXL6 1004 aa14.37□□□□□ -0.11
USP4-214ENST00000491791 UBR1Q8IWV7 1749 aa14.37□□□□□ -0.11
USP4-214ENST00000491791 NGEFQ8N5V2 710 aa14.36□□□□□ -0.11
USP4-214ENST00000491791 PPP4R2Q9NY27 417 aa14.36□□□□□ -0.11
USP4-214ENST00000491791 TRAK1Q9UPV9 953 aa14.36□□□□□ -0.11
USP4-214ENST00000491791 ALKQ9UM73 1620 aa14.36□□□□□ -0.11
USP4-214ENST00000491791 EVC2Q86UK5 1308 aa14.36□□□□□ -0.11
USP4-214ENST00000491791 NSD2O96028 1365 aa14.35□□□□□ -0.11
USP4-214ENST00000491791 LTKP29376 864 aa14.35□□□□□ -0.11
USP4-214ENST00000491791 SLIT1O75093 1534 aa14.35□□□□□ -0.11
USP4-214ENST00000491791 POLR3AO14802 1390 aaPredicted RBP14.34□□□□□ -0.11
USP4-214ENST00000491791 ARHGAP23Q9P227 1491 aa14.34□□□□□ -0.11
USP4-214ENST00000491791 TMEM132EQ6IEE7 984 aa14.34□□□□□ -0.11
USP4-214ENST00000491791 SENP3Q9H4L4 574 aaPredicted RBP14.34□□□□□ -0.11
USP4-214ENST00000491791 SETD1AO15047 1707 aaKnown RBP14.34□□□□□ -0.11
USP4-214ENST00000491791 YTHDC2Q9H6S0 1430 aaKnown RBP14.33□□□□□ -0.11
USP4-214ENST00000491791 ANKRD36BQ8N2N9 1353 aa14.33□□□□□ -0.12
USP4-214ENST00000491791 TMEM2Q9UHN6 1383 aa14.33□□□□□ -0.12
USP4-214ENST00000491791 STRCP1A6NGW2 1772 aa14.32□□□□□ -0.12
USP4-214ENST00000491791 CNGB1Q14028 1251 aaPredicted RBP14.31□□□□□ -0.12
USP4-214ENST00000491791 NCBP3Q53F19 620 aaKnown RBP14.31□□□□□ -0.12
USP4-214ENST00000491791 SIRT1Q96EB6 747 aa14.31□□□□□ -0.12
USP4-214ENST00000491791 ABCF1Q8NE71 845 aaKnown RBP eCLIP14.3□□□□□ -0.12
USP4-214ENST00000491791 ADAMTS8Q9UP79 889 aa14.3□□□□□ -0.12
USP4-214ENST00000491791 ZNF521Q96K83 1311 aa14.3□□□□□ -0.12
USP4-214ENST00000491791 ATAD2Q6PL18 1390 aa14.3□□□□□ -0.12
USP4-214ENST00000491791 ABCC11Q96J66 1382 aa14.3□□□□□ -0.12
USP4-214ENST00000491791 RIMS2Q9UQ26 1411 aa14.3□□□□□ -0.12
USP4-214ENST00000491791 NSD3Q9BZ95 1437 aa14.29□□□□□ -0.12
USP4-214ENST00000491791 CGNL1Q0VF96 1302 aa14.28□□□□□ -0.12
USP4-214ENST00000491791 BCANQ96GW7 911 aa14.28□□□□□ -0.12
USP4-214ENST00000491791 TSHZ2Q9NRE2 1034 aa14.28□□□□□ -0.12
USP4-214ENST00000491791 NRXN3Q9Y4C0 1643 aa14.27□□□□□ -0.12
USP4-214ENST00000491791 WDR43Q15061 677 aaKnown RBP eCLIP14.27□□□□□ -0.13
USP4-214ENST00000491791 SLC12A5Q9H2X9 1139 aa14.27□□□□□ -0.13
USP4-214ENST00000491791 TECPR2O15040 1411 aa14.26□□□□□ -0.13
USP4-214ENST00000491791 KCNA6P17658 529 aa14.26□□□□□ -0.13
USP4-214ENST00000491791 HDGFP51858 240 aaKnown RBP14.26□□□□□ -0.13
USP4-214ENST00000491791 KNDC1Q76NI1 1749 aa14.26□□□□□ -0.13
USP4-214ENST00000491791 FAM135BQ49AJ0 1406 aa14.25□□□□□ -0.13
USP4-214ENST00000491791 TMEM94Q12767 1356 aa14.25□□□□□ -0.13
USP4-214ENST00000491791 PROSER2Q86WR7 435 aaPredicted RBP14.25□□□□□ -0.13
USP4-214ENST00000491791 TRMT2AQ8IZ69 625 aaKnown RBP14.25□□□□□ -0.13
USP4-214ENST00000491791 SHPRHQ149N8 1683 aa14.24□□□□□ -0.13
USP4-214ENST00000491791 SLC26A8Q96RN1 970 aa14.24□□□□□ -0.13
USP4-214ENST00000491791 RCAN3Q9UKA8 241 aa14.23□□□□□ -0.13
USP4-214ENST00000491791 ANKRD26Q9UPS8 1709 aa14.23□□□□□ -0.13
USP4-214ENST00000491791 CD163L1Q9NR16 1453 aa14.23□□□□□ -0.13
USP4-214ENST00000491791 RRP1P56182 461 aaKnown RBP14.22□□□□□ -0.13
USP4-214ENST00000491791 NUTM2DQ5VT03 806 aaPredicted RBP14.22□□□□□ -0.13
USP4-214ENST00000491791 MORC1Q86VD1 984 aa14.22□□□□□ -0.13
USP4-214ENST00000491791 PLEKHH1Q9ULM0 1364 aa14.22□□□□□ -0.13
USP4-214ENST00000491791 NKTRP30414 1462 aaKnown RBP14.21□□□□□ -0.13
USP4-214ENST00000491791 ATP7BP35670 1465 aa14.21□□□□□ -0.13
USP4-214ENST00000491791 XIRP1Q702N8 1843 aaKnown RBP14.21□□□□□ -0.13
USP4-214ENST00000491791 PRAM1Q96QH2 718 aa14.21□□□□□ -0.13
USP4-214ENST00000491791 MSH6P52701 1360 aa14.21□□□□□ -0.14
USP4-214ENST00000491791 IRX6P78412 446 aaPredicted RBP14.2□□□□□ -0.14
USP4-214ENST00000491791 TERF2IPQ9NYB0 399 aa14.2□□□□□ -0.14
USP4-214ENST00000491791 A0A1W2PP64 1363 aa14.2□□□□□ -0.14
USP4-214ENST00000491791 CABP2Q9NPB3 220 aa14.19□□□□□ -0.14
USP4-214ENST00000491791 POGKQ9P215 609 aa14.19□□□□□ -0.14
USP4-214ENST00000491791 GOLGA2Q08379 1002 aa14.18□□□□□ -0.14
USP4-214ENST00000491791 SLFN5Q08AF3 891 aa14.18□□□□□ -0.14
USP4-214ENST00000491791 DUSP27Q5VZP5 1158 aa14.18□□□□□ -0.14
USP4-214ENST00000491791 CDCA7LQ96GN5 454 aa14.18□□□□□ -0.14
USP4-214ENST00000491791 STK26Q9P289 416 aa14.17□□□□□ -0.14
USP4-214ENST00000491791 CCDC27Q2M243 656 aa14.16□□□□□ -0.14
USP4-214ENST00000491791 RBM33Q96EV2 1170 aaKnown RBP14.16□□□□□ -0.14
USP4-214ENST00000491791 CDK19Q9BWU1 502 aa14.16□□□□□ -0.14
USP4-214ENST00000491791 RGS17Q9UGC6 210 aaPredicted RBP14.16□□□□□ -0.14
USP4-214ENST00000491791 PLEKHG1Q9ULL1 1385 aa14.16□□□□□ -0.14
USP4-214ENST00000491791 NWD1Q149M9 1564 aa14.16□□□□□ -0.14
USP4-214ENST00000491791 ROBO1Q9Y6N7 1651 aa14.16□□□□□ -0.14
USP4-214ENST00000491791 ADGRB2O60241 1585 aa14.15□□□□□ -0.14
USP4-214ENST00000491791 CDC42BPGQ6DT37 1551 aa14.15□□□□□ -0.14
USP4-214ENST00000491791 PNPLA6Q8IY17 1366 aa14.15□□□□□ -0.14
USP4-214ENST00000491791 SRPK2P78362 688 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms