RNA–Protein interactions for RNA: ENST00000491433.1

CLCNKA-206, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 3

Gene CLCNKA, Length 824 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-206ENST00000491433 NRXN3Q9Y4C0 1643 aa17.14■□□□□ 0.33
CLCNKA-206ENST00000491433 PPP1R1BQ9UD71 204 aaPredicted RBP17.14■□□□□ 0.33
CLCNKA-206ENST00000491433 NUP155O75694 1391 aa17.14■□□□□ 0.33
CLCNKA-206ENST00000491433 CEP350Q5VT06 3117 aa17.14■□□□□ 0.33
CLCNKA-206ENST00000491433 ZNF326Q5BKZ1 582 aaKnown RBP17.12■□□□□ 0.33
CLCNKA-206ENST00000491433 NINLQ9Y2I6 1382 aa17.12■□□□□ 0.33
CLCNKA-206ENST00000491433 RALGAPBQ86X10 1494 aa17.12■□□□□ 0.33
CLCNKA-206ENST00000491433 LAMC1P11047 1609 aa17.1■□□□□ 0.33
CLCNKA-206ENST00000491433 SEPT12Q8IYM1 358 aa17.1■□□□□ 0.33
CLCNKA-206ENST00000491433 NALCNQ8IZF0 1738 aa17.1■□□□□ 0.33
CLCNKA-206ENST00000491433 EN1Q05925 392 aaPredicted RBP17.09■□□□□ 0.33
CLCNKA-206ENST00000491433 KRT27Q7Z3Y8 459 aa17.09■□□□□ 0.33
CLCNKA-206ENST00000491433 METP08581 1390 aa17.08■□□□□ 0.32
CLCNKA-206ENST00000491433 C1orf167Q5SNV9 1468 aa17.07■□□□□ 0.32
CLCNKA-206ENST00000491433 GLI3P10071 1580 aa17.06■□□□□ 0.32
CLCNKA-206ENST00000491433 SOS2Q07890 1332 aaPredicted RBP17.06■□□□□ 0.32
CLCNKA-206ENST00000491433 UNC5CLQ8IV45 518 aa17.06■□□□□ 0.32
CLCNKA-206ENST00000491433 BRWD3Q6RI45 1802 aa17.05■□□□□ 0.32
CLCNKA-206ENST00000491433 KIF1BO60333 1816 aa17.04■□□□□ 0.32
CLCNKA-206ENST00000491433 NEXMIFQ5QGS0 1516 aa17.03■□□□□ 0.32
CLCNKA-206ENST00000491433 MYOM2P54296 1465 aa17.03■□□□□ 0.32
CLCNKA-206ENST00000491433 COL22A1Q8NFW1 1626 aaPredicted RBP17.03■□□□□ 0.32
CLCNKA-206ENST00000491433 SPON1Q9HCB6 807 aa17.02■□□□□ 0.32
CLCNKA-206ENST00000491433 TNKS1BP1Q9C0C2 1729 aaKnown RBP17.01■□□□□ 0.31
CLCNKA-206ENST00000491433 VGFO15240 615 aaPredicted RBP17.01■□□□□ 0.31
CLCNKA-206ENST00000491433 GIGYF1O75420 1035 aaPredicted RBP17.01■□□□□ 0.31
CLCNKA-206ENST00000491433 NPHP3Q7Z494 1330 aa16.99■□□□□ 0.31
CLCNKA-206ENST00000491433 DISP2A7MBM2 1401 aa16.99■□□□□ 0.31
CLCNKA-206ENST00000491433 PRAG1Q86YV5 1406 aa16.99■□□□□ 0.31
CLCNKA-206ENST00000491433 ORAI2Q96SN7 254 aa16.99■□□□□ 0.31
CLCNKA-206ENST00000491433 MARF1Q9Y4F3 1742 aaKnown RBP16.99■□□□□ 0.31
CLCNKA-206ENST00000491433 HFM1A2PYH4 1435 aa16.98■□□□□ 0.31
CLCNKA-206ENST00000491433 CLTCL1P53675 1640 aa16.97■□□□□ 0.31
CLCNKA-206ENST00000491433 ONECUT3O60422 494 aaPredicted RBP16.97■□□□□ 0.31
CLCNKA-206ENST00000491433 A0A0G2JS52 829 aa16.96■□□□□ 0.31
CLCNKA-206ENST00000491433 MYT1Q01538 1121 aa16.96■□□□□ 0.31
CLCNKA-206ENST00000491433 LRPPRCP42704 1394 aaKnown RBP16.96■□□□□ 0.31
CLCNKA-206ENST00000491433 SLIT2O94813 1529 aa16.96■□□□□ 0.3
CLCNKA-206ENST00000491433 RPGRIP1LQ68CZ1 1315 aa16.96■□□□□ 0.3
CLCNKA-206ENST00000491433 CAMTA1Q9Y6Y1 1673 aa16.95■□□□□ 0.3
CLCNKA-206ENST00000491433 ROBO2Q9HCK4 1378 aa16.95■□□□□ 0.3
CLCNKA-206ENST00000491433 EZH2Q15910 746 aaKnown RBP16.95■□□□□ 0.3
CLCNKA-206ENST00000491433 RGPD1P0DJD0 1748 aa16.94■□□□□ 0.3
CLCNKA-206ENST00000491433 KCNQ2O43526 872 aa16.94■□□□□ 0.3
CLCNKA-206ENST00000491433 ITGAEP38570 1179 aa16.94■□□□□ 0.3
CLCNKA-206ENST00000491433 CCDC9Q9Y3X0 531 aaKnown RBP16.94■□□□□ 0.3
CLCNKA-206ENST00000491433 VPS72Q15906 364 aa16.93■□□□□ 0.3
CLCNKA-206ENST00000491433 ESCO1Q5FWF5 840 aa16.93■□□□□ 0.3
CLCNKA-206ENST00000491433 CDC42BPGQ6DT37 1551 aa16.93■□□□□ 0.3
CLCNKA-206ENST00000491433 UTRNP46939 3433 aa16.92■□□□□ 0.3
CLCNKA-206ENST00000491433 NBPF8Q3BBV2 869 aa16.91■□□□□ 0.3
CLCNKA-206ENST00000491433 NBPF14Q5TI25 921 aa16.91■□□□□ 0.3
CLCNKA-206ENST00000491433 PARD3Q8TEW0 1356 aa16.9■□□□□ 0.3
CLCNKA-206ENST00000491433 SLC34A2O95436 690 aa16.9■□□□□ 0.3
CLCNKA-206ENST00000491433 PXDNQ92626 1479 aa16.9■□□□□ 0.3
CLCNKA-206ENST00000491433 CAMKK2Q96RR4 588 aa16.89■□□□□ 0.29
CLCNKA-206ENST00000491433 PPLO60437 1756 aa16.87■□□□□ 0.29
CLCNKA-206ENST00000491433 ADGRB2O60241 1585 aa16.87■□□□□ 0.29
CLCNKA-206ENST00000491433 FOXO3O43524 673 aa16.86■□□□□ 0.29
CLCNKA-206ENST00000491433 KIF1AQ12756 1690 aa16.85■□□□□ 0.29
CLCNKA-206ENST00000491433 CCDC144AA2RUR9 1427 aa16.83■□□□□ 0.28
CLCNKA-206ENST00000491433 NAIPQ13075 1403 aa16.83■□□□□ 0.28
CLCNKA-206ENST00000491433 SPATA31A3Q5VYP0 1347 aa16.82■□□□□ 0.28
CLCNKA-206ENST00000491433 HAP1P54257 671 aaPredicted RBP16.82■□□□□ 0.28
CLCNKA-206ENST00000491433 CHD4Q14839 1912 aa16.82■□□□□ 0.28
CLCNKA-206ENST00000491433 USP32Q8NFA0 1604 aa16.81■□□□□ 0.28
CLCNKA-206ENST00000491433 TECPR2O15040 1411 aa16.81■□□□□ 0.28
CLCNKA-206ENST00000491433 XPCQ01831 940 aaPredicted RBP16.81■□□□□ 0.28
CLCNKA-206ENST00000491433 FAM98CQ17RN3 349 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-206ENST00000491433 FAM182BQ5T319 152 aa16.81■□□□□ 0.28
CLCNKA-206ENST00000491433 TNS1Q9HBL0 1735 aaKnown RBP16.81■□□□□ 0.28
CLCNKA-206ENST00000491433 NWD2Q9ULI1 1742 aa16.8■□□□□ 0.28
CLCNKA-206ENST00000491433 CAPN15O75808 1086 aa16.8■□□□□ 0.28
CLCNKA-206ENST00000491433 APBA3O96018 575 aa16.8■□□□□ 0.28
CLCNKA-206ENST00000491433 PSME1Q06323 249 aa16.8■□□□□ 0.28
CLCNKA-206ENST00000491433 KNDC1Q76NI1 1749 aa16.79■□□□□ 0.28
CLCNKA-206ENST00000491433 PCDH10Q9P2E7 1040 aa16.79■□□□□ 0.28
CLCNKA-206ENST00000491433 FMN2Q9NZ56 1722 aa16.79■□□□□ 0.28
CLCNKA-206ENST00000491433 ABCC11Q96J66 1382 aa16.77■□□□□ 0.28
CLCNKA-206ENST00000491433 TRIM37O94972 964 aa16.77■□□□□ 0.28
CLCNKA-206ENST00000491433 KRT28Q7Z3Y7 464 aa16.77■□□□□ 0.28
CLCNKA-206ENST00000491433 SLC4A1APQ9BWU0 796 aaKnown RBP16.77■□□□□ 0.28
CLCNKA-206ENST00000491433 RRBP1Q9P2E9 1410 aaKnown RBP16.77■□□□□ 0.27
CLCNKA-206ENST00000491433 NUTM2FA1L443 756 aa16.76■□□□□ 0.27
CLCNKA-206ENST00000491433 STK26Q9P289 416 aa16.76■□□□□ 0.27
CLCNKA-206ENST00000491433 ANKRD30BQ9BXX2 1392 aa16.76■□□□□ 0.27
CLCNKA-206ENST00000491433 FAM83GA6ND36 823 aa16.75■□□□□ 0.27
CLCNKA-206ENST00000491433 WAPLQ7Z5K2 1190 aa16.75■□□□□ 0.27
CLCNKA-206ENST00000491433 TNS3Q68CZ2 1445 aa16.75■□□□□ 0.27
CLCNKA-206ENST00000491433 PLCH1Q4KWH8 1693 aa16.75■□□□□ 0.27
CLCNKA-206ENST00000491433 HSPA6P17066 643 aa16.74■□□□□ 0.27
CLCNKA-206ENST00000491433 ARHGEF10O15013 1369 aa16.74■□□□□ 0.27
CLCNKA-206ENST00000491433 NRKQ7Z2Y5 1582 aa16.73■□□□□ 0.27
CLCNKA-206ENST00000491433 FAM196AQ6ZSG2 479 aa16.73■□□□□ 0.27
CLCNKA-206ENST00000491433 SIRT1Q96EB6 747 aa16.73■□□□□ 0.27
CLCNKA-206ENST00000491433 ADGRF5Q8IZF2 1346 aa16.72■□□□□ 0.27
CLCNKA-206ENST00000491433 SYT17Q9BSW7 474 aa16.72■□□□□ 0.27
CLCNKA-206ENST00000491433 SBNO1A3KN83 1393 aa16.72■□□□□ 0.27
CLCNKA-206ENST00000491433 RREB1Q92766 1687 aa16.72■□□□□ 0.27
CLCNKA-206ENST00000491433 NUP188Q5SRE5 1749 aa16.71■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms