RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 Q3C1V9 767 aa12.11□□□□□ -0.47
SCN1A-206ENST00000491429 HLA-CQ95604 372 aa12.11□□□□□ -0.47
SCN1A-206ENST00000491429 IRF6O14896 467 aa12.1□□□□□ -0.47
SCN1A-206ENST00000491429 KDM4AO75164 1064 aa12.1□□□□□ -0.47
SCN1A-206ENST00000491429 MDM2Q00987 491 aaPredicted RBP12.1□□□□□ -0.47
SCN1A-206ENST00000491429 MMP16P51512 607 aa12.09□□□□□ -0.47
SCN1A-206ENST00000491429 TRIM32Q13049 653 aa12.08□□□□□ -0.48
SCN1A-206ENST00000491429 TTC24A2A3L6 582 aaPredicted RBP12.07□□□□□ -0.48
SCN1A-206ENST00000491429 AXIN1O15169 862 aa12.07□□□□□ -0.48
SCN1A-206ENST00000491429 USB1Q9BQ65 265 aaKnown RBP12.07□□□□□ -0.48
SCN1A-206ENST00000491429 WNT7AO00755 349 aa12.06□□□□□ -0.48
SCN1A-206ENST00000491429 GMPR2Q9P2T1 348 aaKnown RBP12.06□□□□□ -0.48
SCN1A-206ENST00000491429 DXOO77932 396 aaKnown RBP12.05□□□□□ -0.48
SCN1A-206ENST00000491429 CTC1Q2NKJ3 1217 aa12.04□□□□□ -0.48
SCN1A-206ENST00000491429 MINK1Q8N4C8 1332 aaPredicted RBP12.04□□□□□ -0.48
SCN1A-206ENST00000491429 HOXA2O43364 376 aa12.03□□□□□ -0.48
SCN1A-206ENST00000491429 SMPD1P17405 629 aa12.03□□□□□ -0.48
SCN1A-206ENST00000491429 SMCPP49901 116 aaPredicted RBP12.03□□□□□ -0.48
SCN1A-206ENST00000491429 GUCA2AQ02747 115 aa12.03□□□□□ -0.48
SCN1A-206ENST00000491429 LCE2AQ5TA79 106 aaPredicted RBP12.03□□□□□ -0.48
SCN1A-206ENST00000491429 TREML4Q6UXN2 200 aa12.03□□□□□ -0.48
SCN1A-206ENST00000491429 CCDC102AQ96A19 550 aa12.03□□□□□ -0.48
SCN1A-206ENST00000491429 MRGPRX2Q96LB1 330 aa12.03□□□□□ -0.48
SCN1A-206ENST00000491429 SNIP1Q8TAD8 396 aaKnown RBP12.02□□□□□ -0.49
SCN1A-206ENST00000491429 TULP1O00294 542 aaPredicted RBP12.01□□□□□ -0.49
SCN1A-206ENST00000491429 USP46P62068 366 aa12.01□□□□□ -0.49
SCN1A-206ENST00000491429 CCDC24Q8N4L8 307 aa12.01□□□□□ -0.49
SCN1A-206ENST00000491429 C11orf95C9JLR9 678 aaPredicted RBP12□□□□□ -0.49
SCN1A-206ENST00000491429 J3QL48 77 aa12□□□□□ -0.49
SCN1A-206ENST00000491429 SYMPKQ92797 1274 aaKnown RBP11.98□□□□□ -0.49
SCN1A-206ENST00000491429 GPCPD1Q9NPB8 672 aa11.97□□□□□ -0.49
SCN1A-206ENST00000491429 FAM217BQ9NTX9 383 aaPredicted RBP11.97□□□□□ -0.49
SCN1A-206ENST00000491429 SKOR1P84550 965 aa11.96□□□□□ -0.49
SCN1A-206ENST00000491429 CLCN1P35523 988 aa11.95□□□□□ -0.5
SCN1A-206ENST00000491429 RC3H1Q5TC82 1133 aaKnown RBP11.94□□□□□ -0.5
SCN1A-206ENST00000491429 VSIG10Q8N0Z9 540 aa11.94□□□□□ -0.5
SCN1A-206ENST00000491429 HPS1Q92902 700 aa11.94□□□□□ -0.5
SCN1A-206ENST00000491429 ATP13A2Q9NQ11 1180 aa11.94□□□□□ -0.5
SCN1A-206ENST00000491429 JUNDP17535 347 aa11.93□□□□□ -0.5
SCN1A-206ENST00000491429 REPIN1Q9BWE0 567 aaKnown RBP11.93□□□□□ -0.5
SCN1A-206ENST00000491429 SNRPBP14678 240 aaKnown RBP11.91□□□□□ -0.5
SCN1A-206ENST00000491429 WNT7BP56706 349 aa11.91□□□□□ -0.5
SCN1A-206ENST00000491429 NUTM1Q86Y26 1132 aa11.91□□□□□ -0.5
SCN1A-206ENST00000491429 WFS1O76024 890 aa11.9□□□□□ -0.5
SCN1A-206ENST00000491429 PTCRAQ6ISU1 281 aaPredicted RBP11.89□□□□□ -0.51
SCN1A-206ENST00000491429 RETREG3Q86VR2 466 aa11.89□□□□□ -0.51
SCN1A-206ENST00000491429 KRI1Q8N9T8 703 aaKnown RBP11.89□□□□□ -0.51
SCN1A-206ENST00000491429 PCDHGC3Q9UN70 934 aa11.89□□□□□ -0.51
SCN1A-206ENST00000491429 NFX1Q12986 1120 aaKnown RBP11.88□□□□□ -0.51
SCN1A-206ENST00000491429 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.87□□□□□ -0.51
SCN1A-206ENST00000491429 NUDT12Q9BQG2 462 aa11.87□□□□□ -0.51
SCN1A-206ENST00000491429 FDX1P10109 184 aa11.86□□□□□ -0.51
SCN1A-206ENST00000491429 TRIM47Q96LD4 638 aa11.86□□□□□ -0.51
SCN1A-206ENST00000491429 ALDH1A1P00352 501 aa11.85□□□□□ -0.51
SCN1A-206ENST00000491429 C6orf229H3BNL8 230 aa11.84□□□□□ -0.51
SCN1A-206ENST00000491429 SSTR3P32745 418 aaPredicted RBP11.83□□□□□ -0.52
SCN1A-206ENST00000491429 SENP2Q9HC62 589 aa11.83□□□□□ -0.52
SCN1A-206ENST00000491429 SIAH2O43255 324 aa11.82□□□□□ -0.52
SCN1A-206ENST00000491429 LCE2CQ5TA81 110 aa11.82□□□□□ -0.52
SCN1A-206ENST00000491429 SPIRE2Q8WWL2 714 aa11.82□□□□□ -0.52
SCN1A-206ENST00000491429 NDUFV2P19404 249 aa11.81□□□□□ -0.52
SCN1A-206ENST00000491429 EHBP1Q8NDI1 1231 aa11.81□□□□□ -0.52
SCN1A-206ENST00000491429 MS4A1P11836 297 aa11.8□□□□□ -0.52
SCN1A-206ENST00000491429 MOXD2PA6NHM9 499 aa11.79□□□□□ -0.52
SCN1A-206ENST00000491429 CCNYL3P0C7X3 344 aa11.79□□□□□ -0.52
SCN1A-206ENST00000491429 SH3BP2P78314 561 aa11.79□□□□□ -0.52
SCN1A-206ENST00000491429 TERTO14746 1132 aaKnown RBP11.77□□□□□ -0.53
SCN1A-206ENST00000491429 TTLL12Q14166 644 aaPredicted RBP11.77□□□□□ -0.53
SCN1A-206ENST00000491429 KIFC2Q96AC6 838 aa11.77□□□□□ -0.53
SCN1A-206ENST00000491429 WIPF1O43516 503 aa11.76□□□□□ -0.53
SCN1A-206ENST00000491429 UNC93B1Q9H1C4 597 aa11.76□□□□□ -0.53
SCN1A-206ENST00000491429 BMP1P13497 986 aa11.75□□□□□ -0.53
SCN1A-206ENST00000491429 PTPRNQ16849 979 aa11.75□□□□□ -0.53
SCN1A-206ENST00000491429 LINC01559Q495D7 138 aa11.75□□□□□ -0.53
SCN1A-206ENST00000491429 BARGINQ6ZT62 677 aa11.75□□□□□ -0.53
SCN1A-206ENST00000491429 PRR7Q8TB68 274 aa11.74□□□□□ -0.53
SCN1A-206ENST00000491429 EVA1BQ9NVM1 165 aa11.74□□□□□ -0.53
SCN1A-206ENST00000491429 WASF2Q9Y6W5 498 aa11.74□□□□□ -0.53
SCN1A-206ENST00000491429 ZMYND10O75800 440 aa11.73□□□□□ -0.53
SCN1A-206ENST00000491429 AMHR2Q16671 573 aa11.73□□□□□ -0.53
SCN1A-206ENST00000491429 GIGYF2Q6Y7W6 1299 aaKnown RBP11.73□□□□□ -0.53
SCN1A-206ENST00000491429 TRIM46Q7Z4K8 759 aa11.73□□□□□ -0.53
SCN1A-206ENST00000491429 BAP1Q92560 729 aa11.73□□□□□ -0.53
SCN1A-206ENST00000491429 TLL2Q9Y6L7 1015 aa11.72□□□□□ -0.53
SCN1A-206ENST00000491429 CAPN5O15484 640 aaPredicted RBP11.71□□□□□ -0.53
SCN1A-206ENST00000491429 KCNH2Q12809 1159 aa11.71□□□□□ -0.53
SCN1A-206ENST00000491429 MTMR2Q13614 643 aa11.71□□□□□ -0.53
SCN1A-206ENST00000491429 ZC3H15Q8WU90 426 aaKnown RBP11.7□□□□□ -0.54
SCN1A-206ENST00000491429 BEGAINQ9BUH8 593 aa11.7□□□□□ -0.54
SCN1A-206ENST00000491429 INSM1Q01101 510 aaPredicted RBP11.68□□□□□ -0.54
SCN1A-206ENST00000491429 ZNF511Q8NB15 262 aa11.68□□□□□ -0.54
SCN1A-206ENST00000491429 STK17AQ9UEE5 414 aa11.68□□□□□ -0.54
SCN1A-206ENST00000491429 DESI1Q6ICB0 168 aa11.67□□□□□ -0.54
SCN1A-206ENST00000491429 TBC1D2Q9BYX2 928 aa11.67□□□□□ -0.54
SCN1A-206ENST00000491429 SPDYE5A6NIY4 337 aa11.66□□□□□ -0.54
SCN1A-206ENST00000491429 RSBN1LQ6PCB5 846 aaPredicted RBP11.65□□□□□ -0.54
SCN1A-206ENST00000491429 PCDHB15Q9Y5E8 787 aa11.65□□□□□ -0.54
SCN1A-206ENST00000491429 PARP9Q8IXQ6 854 aa11.64□□□□□ -0.55
SCN1A-206ENST00000491429 NXF1Q9UBU9 619 aaKnown RBP11.64□□□□□ -0.55
SCN1A-206ENST00000491429 CFAP99D6REC4 459 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms