RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 LRPPRCP42704 1394 aaKnown RBP14.18□□□□□ -0.14
HDAC3-210ENST00000490808 WASHC2AQ641Q2 1341 aa14.16□□□□□ -0.14
HDAC3-210ENST00000490808 DLC1Q96QB1 1528 aa14.16□□□□□ -0.14
HDAC3-210ENST00000490808 PROSER2Q86WR7 435 aaPredicted RBP14.16□□□□□ -0.14
HDAC3-210ENST00000490808 DCCP43146 1447 aa14.15□□□□□ -0.14
HDAC3-210ENST00000490808 FAM135BQ49AJ0 1406 aa14.15□□□□□ -0.14
HDAC3-210ENST00000490808 EIF3AQ14152 1382 aaKnown RBP14.15□□□□□ -0.14
HDAC3-210ENST00000490808 CCER2I3L3R5 266 aa14.15□□□□□ -0.14
HDAC3-210ENST00000490808 PTPRUQ92729 1446 aa14.15□□□□□ -0.14
HDAC3-210ENST00000490808 YTHDC2Q9H6S0 1430 aaKnown RBP14.15□□□□□ -0.14
HDAC3-210ENST00000490808 TMEM94Q12767 1356 aa14.14□□□□□ -0.15
HDAC3-210ENST00000490808 ADGRB1O14514 1584 aa14.13□□□□□ -0.15
HDAC3-210ENST00000490808 MSH6P52701 1360 aa14.13□□□□□ -0.15
HDAC3-210ENST00000490808 ST20-MTHFSA0A0A6YYL1 179 aa14.13□□□□□ -0.15
HDAC3-210ENST00000490808 CDCA8Q53HL2 280 aa14.13□□□□□ -0.15
HDAC3-210ENST00000490808 KIF7Q2M1P5 1343 aa14.13□□□□□ -0.15
HDAC3-210ENST00000490808 ASXL1Q8IXJ9 1541 aa14.12□□□□□ -0.15
HDAC3-210ENST00000490808 CFAP70Q5T0N1 1121 aa14.12□□□□□ -0.15
HDAC3-210ENST00000490808 C19orf44Q9H6X5 657 aa14.12□□□□□ -0.15
HDAC3-210ENST00000490808 ROBO1Q9Y6N7 1651 aa14.11□□□□□ -0.15
HDAC3-210ENST00000490808 TMF1P82094 1093 aa14.11□□□□□ -0.15
HDAC3-210ENST00000490808 ADGRL3Q9HAR2 1447 aa14.1□□□□□ -0.15
HDAC3-210ENST00000490808 NBPF1Q3BBV0 1214 aa14.1□□□□□ -0.15
HDAC3-210ENST00000490808 CADPS2Q86UW7 1296 aa14.1□□□□□ -0.15
HDAC3-210ENST00000490808 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.08□□□□□ -0.16
HDAC3-210ENST00000490808 C14orf37Q86TY3 774 aa14.08□□□□□ -0.16
HDAC3-210ENST00000490808 C11orf95C9JLR9 678 aaPredicted RBP14.07□□□□□ -0.16
HDAC3-210ENST00000490808 POLR3GLQ9BT43 218 aa14.07□□□□□ -0.16
HDAC3-210ENST00000490808 ROBO2Q9HCK4 1378 aa14.07□□□□□ -0.16
HDAC3-210ENST00000490808 ARHGEF28Q8N1W1 1705 aaKnown RBP14.07□□□□□ -0.16
HDAC3-210ENST00000490808 CDC42BPGQ6DT37 1551 aa14.06□□□□□ -0.16
HDAC3-210ENST00000490808 ATF3P18847 181 aa14.06□□□□□ -0.16
HDAC3-210ENST00000490808 TMEM132EQ6IEE7 984 aa14.06□□□□□ -0.16
HDAC3-210ENST00000490808 NALCNQ8IZF0 1738 aa14.05□□□□□ -0.16
HDAC3-210ENST00000490808 ADGRB2O60241 1585 aa14.05□□□□□ -0.16
HDAC3-210ENST00000490808 PHLPP1O60346 1717 aa14.04□□□□□ -0.16
HDAC3-210ENST00000490808 YTHDC1Q96MU7 727 aaKnown RBP14.04□□□□□ -0.16
HDAC3-210ENST00000490808 POGKQ9P215 609 aa14.04□□□□□ -0.16
HDAC3-210ENST00000490808 STK26Q9P289 416 aa14.04□□□□□ -0.16
HDAC3-210ENST00000490808 UPF1Q92900 1129 aaKnown RBP eCLIP14.03□□□□□ -0.16
HDAC3-210ENST00000490808 KTN1Q86UP2 1357 aaKnown RBP14.03□□□□□ -0.16
HDAC3-210ENST00000490808 RBM33Q96EV2 1170 aaKnown RBP14.02□□□□□ -0.17
HDAC3-210ENST00000490808 SBNO2Q9Y2G9 1366 aa14.01□□□□□ -0.17
HDAC3-210ENST00000490808 SLAIN2Q9P270 581 aa14.01□□□□□ -0.17
HDAC3-210ENST00000490808 TRAK1Q9UPV9 953 aa14.01□□□□□ -0.17
HDAC3-210ENST00000490808 JCADQ9P266 1359 aa14□□□□□ -0.17
HDAC3-210ENST00000490808 PRAM1Q96QH2 718 aa14□□□□□ -0.17
HDAC3-210ENST00000490808 TESK2Q96S53 571 aa14□□□□□ -0.17
HDAC3-210ENST00000490808 CENPJQ9HC77 1338 aaPredicted RBP13.99□□□□□ -0.17
HDAC3-210ENST00000490808 PRKRIP1Q9H875 184 aaPredicted RBP13.99□□□□□ -0.17
HDAC3-210ENST00000490808 ANKARQ7Z5J8 1434 aa13.98□□□□□ -0.17
HDAC3-210ENST00000490808 FMN2Q9NZ56 1722 aa13.98□□□□□ -0.17
HDAC3-210ENST00000490808 WAPLQ7Z5K2 1190 aa13.98□□□□□ -0.17
HDAC3-210ENST00000490808 MST1RQ04912 1400 aa13.98□□□□□ -0.17
HDAC3-210ENST00000490808 RALBP1Q15311 655 aa13.97□□□□□ -0.17
HDAC3-210ENST00000490808 MEX3CQ5U5Q3 659 aaKnown RBP13.97□□□□□ -0.17
HDAC3-210ENST00000490808 ZNF772Q68DY9 489 aaPredicted RBP13.97□□□□□ -0.17
HDAC3-210ENST00000490808 QRICH2Q9H0J4 1663 aa13.97□□□□□ -0.17
HDAC3-210ENST00000490808 ITSN1Q15811 1721 aa13.96□□□□□ -0.17
HDAC3-210ENST00000490808 PLEKHH1Q9ULM0 1364 aa13.96□□□□□ -0.18
HDAC3-210ENST00000490808 KIF1AQ12756 1690 aa13.95□□□□□ -0.18
HDAC3-210ENST00000490808 C1orf167Q5SNV9 1468 aa13.95□□□□□ -0.18
HDAC3-210ENST00000490808 COL16A1Q07092 1604 aaPredicted RBP13.95□□□□□ -0.18
HDAC3-210ENST00000490808 LRP6O75581 1613 aa13.94□□□□□ -0.18
HDAC3-210ENST00000490808 WASLO00401 505 aaPredicted RBP13.94□□□□□ -0.18
HDAC3-210ENST00000490808 PUS7Q96PZ0 661 aaKnown RBP13.94□□□□□ -0.18
HDAC3-210ENST00000490808 TULP4Q9NRJ4 1543 aa13.94□□□□□ -0.18
HDAC3-210ENST00000490808 AHDC1Q5TGY3 1603 aaPredicted RBP13.93□□□□□ -0.18
HDAC3-210ENST00000490808 SPATA31A6Q5VVP1 1343 aa13.93□□□□□ -0.18
HDAC3-210ENST00000490808 EVC2Q86UK5 1308 aa13.92□□□□□ -0.18
HDAC3-210ENST00000490808 NHSL1Q5SYE7 1610 aa13.91□□□□□ -0.18
HDAC3-210ENST00000490808 RXRBP28702 533 aa13.91□□□□□ -0.18
HDAC3-210ENST00000490808 MINK1Q8N4C8 1332 aaPredicted RBP13.9□□□□□ -0.18
HDAC3-210ENST00000490808 SAFB2Q14151 953 aaKnown RBP eCLIP13.9□□□□□ -0.18
HDAC3-210ENST00000490808 BRINP3Q76B58 766 aa13.9□□□□□ -0.18
HDAC3-210ENST00000490808 MRS2Q9HD23 443 aa13.9□□□□□ -0.18
HDAC3-210ENST00000490808 KNSTRNQ9Y448 316 aa13.9□□□□□ -0.18
HDAC3-210ENST00000490808 NPHP3Q7Z494 1330 aa13.9□□□□□ -0.19
HDAC3-210ENST00000490808 SHPRHQ149N8 1683 aa13.89□□□□□ -0.19
HDAC3-210ENST00000490808 PANK3Q9H999 370 aa13.89□□□□□ -0.19
HDAC3-210ENST00000490808 RGPD8O14715 1765 aaPredicted RBP13.88□□□□□ -0.19
HDAC3-210ENST00000490808 ATAD2Q6PL18 1390 aa13.88□□□□□ -0.19
HDAC3-210ENST00000490808 CCDC61Q9Y6R9 512 aa13.88□□□□□ -0.19
HDAC3-210ENST00000490808 MYBBP1AQ9BQG0 1328 aaKnown RBP13.88□□□□□ -0.19
HDAC3-210ENST00000490808 BRD4O60885 1362 aaPredicted RBP13.87□□□□□ -0.19
HDAC3-210ENST00000490808 CDK19Q9BWU1 502 aa13.87□□□□□ -0.19
HDAC3-210ENST00000490808 ATP7BP35670 1465 aa13.87□□□□□ -0.19
HDAC3-210ENST00000490808 USP32Q8NFA0 1604 aa13.86□□□□□ -0.19
HDAC3-210ENST00000490808 NINLQ9Y2I6 1382 aa13.86□□□□□ -0.19
HDAC3-210ENST00000490808 TOPAZ1Q8N9V7 1692 aa13.86□□□□□ -0.19
HDAC3-210ENST00000490808 ESCO1Q5FWF5 840 aa13.86□□□□□ -0.19
HDAC3-210ENST00000490808 TMC1Q8TDI8 760 aa13.86□□□□□ -0.19
HDAC3-210ENST00000490808 PHF8Q9UPP1 1060 aa13.86□□□□□ -0.19
HDAC3-210ENST00000490808 CDK12Q9NYV4 1490 aaPredicted RBP13.86□□□□□ -0.19
HDAC3-210ENST00000490808 NUTM2BA6NNL0 878 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-210ENST00000490808 NUTM2EB1AL46 878 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-210ENST00000490808 PER1O15534 1290 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-210ENST00000490808 NUTM2AQ8IVF1 878 aaPredicted RBP13.85□□□□□ -0.19
HDAC3-210ENST00000490808 LRRC59Q96AG4 307 aaKnown RBP13.85□□□□□ -0.19
HDAC3-210ENST00000490808 PLEKHG3A1L390 1219 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms