RNA–Protein interactions for RNA: ENST00000490163.5

UBXN4-208, Transcript of UBX domain protein 4, humanhuman

TSL 2

Gene UBXN4, Length 3,394 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-208ENST00000490163 PRM3Q9NNZ6 103 aa4.81□□□□□ -1.64
UBXN4-208ENST00000490163 ZSWIM6Q9HCJ5 1215 aa4.8□□□□□ -1.64
UBXN4-208ENST00000490163 C6orf132Q5T0Z8 1188 aa4.8□□□□□ -1.64
UBXN4-208ENST00000490163 ZRANB1Q9UGI0 708 aa4.8□□□□□ -1.64
UBXN4-208ENST00000490163 PCDHGC3Q9UN70 934 aa4.8□□□□□ -1.64
UBXN4-208ENST00000490163 CSB-PGBD3P0DP91 1061 aa4.79□□□□□ -1.64
UBXN4-208ENST00000490163 DCBLD2Q96PD2 775 aa4.79□□□□□ -1.64
UBXN4-208ENST00000490163 DDX12PQ92771 950 aa4.79□□□□□ -1.64
UBXN4-208ENST00000490163 C3orf80F5H4A9 247 aa4.79□□□□□ -1.64
UBXN4-208ENST00000490163 ATN1P54259 1190 aaPredicted RBP4.79□□□□□ -1.64
UBXN4-208ENST00000490163 POTEGQ6S5H5 508 aa4.79□□□□□ -1.64
UBXN4-208ENST00000490163 M0R2N6 131 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 HOXA2O43364 376 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 RECKO95980 971 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 PTK7Q13308 1070 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 TRAF7Q6Q0C0 670 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 SIX5Q8N196 739 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 HMX1Q9NP08 348 aaPredicted RBP4.78□□□□□ -1.64
UBXN4-208ENST00000490163 PCDHB15Q9Y5E8 787 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 PCDHGA4Q9Y5G9 962 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 F12P00748 615 aaPredicted RBP4.78□□□□□ -1.64
UBXN4-208ENST00000490163 CD44P16070 742 aaKnown RBP4.78□□□□□ -1.64
UBXN4-208ENST00000490163 DRC1Q96MC2 740 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 OCSTAMPQ9BR26 566 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 TRIM35Q9UPQ4 493 aa4.78□□□□□ -1.64
UBXN4-208ENST00000490163 MOXD2PA6NHM9 499 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 RBL2Q08999 1139 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 RAD51AP2Q09MP3 1159 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 OCLNQ16625 522 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 SWI5Q1ZZU3 235 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 POLR3EQ9NVU0 708 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 GPSM3Q9Y4H4 160 aa4.78□□□□□ -1.65
UBXN4-208ENST00000490163 ARID4AP29374 1257 aaPredicted RBP4.77□□□□□ -1.65
UBXN4-208ENST00000490163 CDCA7Q9BWT1 371 aaPredicted RBP4.77□□□□□ -1.65
UBXN4-208ENST00000490163 TFIP11Q9UBB9 837 aaKnown RBP4.77□□□□□ -1.65
UBXN4-208ENST00000490163 MRRFQ96E11 262 aaKnown RBP4.77□□□□□ -1.65
UBXN4-208ENST00000490163 TMEM164Q5U3C3 297 aa4.76□□□□□ -1.65
UBXN4-208ENST00000490163 ZBTB3Q9H5J0 574 aa4.76□□□□□ -1.65
UBXN4-208ENST00000490163 METTL16Q86W50 562 aaKnown RBP4.76□□□□□ -1.65
UBXN4-208ENST00000490163 SALL2Q9Y467 1007 aaPredicted RBP4.76□□□□□ -1.65
UBXN4-208ENST00000490163 POTEB3A0JP26 581 aa4.76□□□□□ -1.65
UBXN4-208ENST00000490163 POTEBQ6S5H4 581 aa4.76□□□□□ -1.65
UBXN4-208ENST00000490163 PPP1R3GB7ZBB8 358 aa4.75□□□□□ -1.65
UBXN4-208ENST00000490163 TBC1D9Q6ZT07 1266 aa4.75□□□□□ -1.65
UBXN4-208ENST00000490163 SREK1Q8WXA9 508 aaKnown RBP4.75□□□□□ -1.65
UBXN4-208ENST00000490163 RCCD1A6NED2 376 aa4.75□□□□□ -1.65
UBXN4-208ENST00000490163 RBM46Q8TBY0 533 aaKnown RBP4.75□□□□□ -1.65
UBXN4-208ENST00000490163 SULF1Q8IWU6 871 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 SLF2Q8IX21 1173 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 ASB16Q96NS5 453 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 CFAP99D6REC4 459 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 ZC3H6P61129 1189 aaKnown RBP4.74□□□□□ -1.65
UBXN4-208ENST00000490163 POTEEQ6S8J3 1075 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 NDUFV2P19404 249 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 CCER1Q8TC90 406 aaPredicted RBP4.74□□□□□ -1.65
UBXN4-208ENST00000490163 UBXN4Q92575 508 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 PCDH10Q9P2E7 1040 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 CCDC180Q9P1Z9 1646 aa4.74□□□□□ -1.65
UBXN4-208ENST00000490163 FMR1Q06787 632 aaKnown RBP eCLIP4.73□□□□□ -1.65
UBXN4-208ENST00000490163 DSC3Q14574 896 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 NOP9Q86U38 636 aaKnown RBP4.73□□□□□ -1.65
UBXN4-208ENST00000490163 CDCA7LQ96GN5 454 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 TINF2Q9BSI4 451 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 TSKSQ9UJT2 592 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 ZBTB7BO15156 539 aaPredicted RBP4.73□□□□□ -1.65
UBXN4-208ENST00000490163 POTEIP0CG38 1075 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 CTDSPL2Q05D32 466 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 LYPD8Q6UX82 237 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 BCL2L12Q9HB09 334 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 NLRP2Q9NX02 1062 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 HOXB3P14651 431 aaPredicted RBP4.73□□□□□ -1.65
UBXN4-208ENST00000490163 DNAJB2P25686 324 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 NR1H3Q13133 447 aa4.73□□□□□ -1.65
UBXN4-208ENST00000490163 ALKBH8Q96BT7 664 aaKnown RBP4.73□□□□□ -1.65
UBXN4-208ENST00000490163 ZDHHC16Q969W1 377 aa4.72□□□□□ -1.65
UBXN4-208ENST00000490163 COL9A1P20849 921 aa4.72□□□□□ -1.65
UBXN4-208ENST00000490163 PTPN12Q05209 780 aaKnown RBP4.72□□□□□ -1.65
UBXN4-208ENST00000490163 METTL5Q9NRN9 209 aaKnown RBP4.72□□□□□ -1.65
UBXN4-208ENST00000490163 TTBK1Q5TCY1 1321 aaPredicted RBP4.71□□□□□ -1.65
UBXN4-208ENST00000490163 ARHGAP4P98171 946 aa4.71□□□□□ -1.66
UBXN4-208ENST00000490163 GPR153Q6NV75 609 aa4.71□□□□□ -1.66
UBXN4-208ENST00000490163 MKRN1Q9UHC7 482 aaKnown RBP4.71□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L15C9J2P7 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L10C9JJH3 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L13C9JLJ4 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L12C9JPN9 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L11C9JVI0 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L21D6R901 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L18D6R9N7 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L22D6RA61 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L17D6RBQ6 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L19D6RCP7 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L20D6RJB6 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 GOLGA2Q08379 1002 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 USP17L24Q0WX57 530 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 ADAM33Q9BZ11 813 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 CABLES1Q8TDN4 633 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 GALR2O43603 387 aaPredicted RBP4.7□□□□□ -1.66
UBXN4-208ENST00000490163 ABL2P42684 1182 aa4.7□□□□□ -1.66
UBXN4-208ENST00000490163 GPKOWQ92917 476 aaPredicted RBP eCLIP4.7□□□□□ -1.662e-6■■■□□ 15.9
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms