RNA–Protein interactions for RNA: ENST00000487996.5

HLA-DMB-261, Transcript of major histocompatibility complex, class II, DM beta, humanhuman

Gene HLA-DMB, Length 1,746 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMB-261ENST00000487996 PTCH1Q13635 1447 aa14.72□□□□□ -0.05
HLA-DMB-261ENST00000487996 TESK2Q96S53 571 aa14.72□□□□□ -0.05
HLA-DMB-261ENST00000487996 STRCQ7RTU9 1775 aa14.71□□□□□ -0.05
HLA-DMB-261ENST00000487996 PRAM1Q96QH2 718 aa14.71□□□□□ -0.05
HLA-DMB-261ENST00000487996 AMOTL2Q9Y2J4 779 aa14.71□□□□□ -0.05
HLA-DMB-261ENST00000487996 XRN1Q8IZH2 1706 aaKnown RBP14.71□□□□□ -0.06
HLA-DMB-261ENST00000487996 CHD2O14647 1828 aaKnown RBP14.71□□□□□ -0.06
HLA-DMB-261ENST00000487996 PTPRUQ92729 1446 aa14.69□□□□□ -0.06
HLA-DMB-261ENST00000487996 CCDC7Q96M83 1385 aa14.68□□□□□ -0.06
HLA-DMB-261ENST00000487996 EVC2Q86UK5 1308 aa14.67□□□□□ -0.06
HLA-DMB-261ENST00000487996 KCNA6P17658 529 aa14.67□□□□□ -0.06
HLA-DMB-261ENST00000487996 NWD1Q149M9 1564 aa14.67□□□□□ -0.06
HLA-DMB-261ENST00000487996 ROBO2Q9HCK4 1378 aa14.67□□□□□ -0.06
HLA-DMB-261ENST00000487996 KIF7Q2M1P5 1343 aa14.67□□□□□ -0.06
HLA-DMB-261ENST00000487996 WASHC2AQ641Q2 1341 aa14.67□□□□□ -0.06
HLA-DMB-261ENST00000487996 PUS7Q96PZ0 661 aaKnown RBP14.66□□□□□ -0.06
HLA-DMB-261ENST00000487996 NKTRP30414 1462 aaKnown RBP14.66□□□□□ -0.06
HLA-DMB-261ENST00000487996 SAFB2Q14151 953 aaKnown RBP eCLIP14.65□□□□□ -0.06
HLA-DMB-261ENST00000487996 DISP3Q9P2K9 1392 aa14.65□□□□□ -0.06
HLA-DMB-261ENST00000487996 NPM3O75607 178 aaKnown RBP14.64□□□□□ -0.07
HLA-DMB-261ENST00000487996 WAPLQ7Z5K2 1190 aa14.64□□□□□ -0.07
HLA-DMB-261ENST00000487996 C11orf95C9JLR9 678 aaPredicted RBP14.63□□□□□ -0.07
HLA-DMB-261ENST00000487996 MINK1Q8N4C8 1332 aaPredicted RBP14.63□□□□□ -0.07
HLA-DMB-261ENST00000487996 PLEKHH1Q9ULM0 1364 aa14.63□□□□□ -0.07
HLA-DMB-261ENST00000487996 ADGRB2O60241 1585 aa14.62□□□□□ -0.07
HLA-DMB-261ENST00000487996 POLR3GLQ9BT43 218 aa14.62□□□□□ -0.07
HLA-DMB-261ENST00000487996 TULP4Q9NRJ4 1543 aa14.61□□□□□ -0.07
HLA-DMB-261ENST00000487996 ATAD2Q6PL18 1390 aa14.61□□□□□ -0.07
HLA-DMB-261ENST00000487996 NCOA3Q9Y6Q9 1424 aa14.6□□□□□ -0.07
HLA-DMB-261ENST00000487996 NINLQ9Y2I6 1382 aa14.59□□□□□ -0.07
HLA-DMB-261ENST00000487996 SRPK2P78362 688 aaKnown RBP14.59□□□□□ -0.07
HLA-DMB-261ENST00000487996 DDX10Q13206 875 aaKnown RBP14.59□□□□□ -0.07
HLA-DMB-261ENST00000487996 WASLO00401 505 aaPredicted RBP14.58□□□□□ -0.07
HLA-DMB-261ENST00000487996 DIEXFQ68CQ4 756 aaKnown RBP14.58□□□□□ -0.07
HLA-DMB-261ENST00000487996 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.58□□□□□ -0.08
HLA-DMB-261ENST00000487996 PROSER2Q86WR7 435 aaPredicted RBP14.58□□□□□ -0.08
HLA-DMB-261ENST00000487996 CDK19Q9BWU1 502 aa14.58□□□□□ -0.08
HLA-DMB-261ENST00000487996 LTBP4Q8N2S1 1624 aa14.57□□□□□ -0.08
HLA-DMB-261ENST00000487996 ADGRL3Q9HAR2 1447 aa14.57□□□□□ -0.08
HLA-DMB-261ENST00000487996 C14orf37Q86TY3 774 aa14.56□□□□□ -0.08
HLA-DMB-261ENST00000487996 CDC42BPGQ6DT37 1551 aa14.56□□□□□ -0.08
HLA-DMB-261ENST00000487996 STRCP1A6NGW2 1772 aa14.55□□□□□ -0.08
HLA-DMB-261ENST00000487996 CABP2Q9NPB3 220 aa14.55□□□□□ -0.08
HLA-DMB-261ENST00000487996 NALCNQ8IZF0 1738 aa14.54□□□□□ -0.08
HLA-DMB-261ENST00000487996 MYOM1P52179 1685 aa14.53□□□□□ -0.08
HLA-DMB-261ENST00000487996 ZNF335Q9H4Z2 1342 aaPredicted RBP14.53□□□□□ -0.08
HLA-DMB-261ENST00000487996 ANKARQ7Z5J8 1434 aa14.53□□□□□ -0.08
HLA-DMB-261ENST00000487996 KCNA4P22459 653 aa14.52□□□□□ -0.08
HLA-DMB-261ENST00000487996 TMC1Q8TDI8 760 aa14.52□□□□□ -0.08
HLA-DMB-261ENST00000487996 C19orf44Q9H6X5 657 aa14.52□□□□□ -0.08
HLA-DMB-261ENST00000487996 TMEM94Q12767 1356 aa14.52□□□□□ -0.08
HLA-DMB-261ENST00000487996 DCCP43146 1447 aa14.52□□□□□ -0.08
HLA-DMB-261ENST00000487996 CCDC61Q9Y6R9 512 aa14.52□□□□□ -0.09
HLA-DMB-261ENST00000487996 ITSN1Q15811 1721 aa14.51□□□□□ -0.09
HLA-DMB-261ENST00000487996 FMN2Q9NZ56 1722 aa14.51□□□□□ -0.09
HLA-DMB-261ENST00000487996 ATP7BP35670 1465 aa14.5□□□□□ -0.09
HLA-DMB-261ENST00000487996 MSH6P52701 1360 aa14.5□□□□□ -0.09
HLA-DMB-261ENST00000487996 NUDT16Q96DE0 195 aaKnown RBP14.5□□□□□ -0.09
HLA-DMB-261ENST00000487996 TERF2IPQ9NYB0 399 aa14.5□□□□□ -0.09
HLA-DMB-261ENST00000487996 LRRC7Q96NW7 1537 aa14.5□□□□□ -0.09
HLA-DMB-261ENST00000487996 PANK3Q9H999 370 aa14.49□□□□□ -0.09
HLA-DMB-261ENST00000487996 ANKRD36BQ8N2N9 1353 aa14.49□□□□□ -0.09
HLA-DMB-261ENST00000487996 IQSEC2Q5JU85 1478 aa14.48□□□□□ -0.09
HLA-DMB-261ENST00000487996 PPIP5K1Q6PFW1 1433 aa14.48□□□□□ -0.09
HLA-DMB-261ENST00000487996 ATF3P18847 181 aa14.48□□□□□ -0.09
HLA-DMB-261ENST00000487996 HDGFL2Q7Z4V5 671 aaPredicted RBP14.48□□□□□ -0.09
HLA-DMB-261ENST00000487996 SLC12A5Q9H2X9 1139 aa14.48□□□□□ -0.09
HLA-DMB-261ENST00000487996 TOPAZ1Q8N9V7 1692 aa14.48□□□□□ -0.09
HLA-DMB-261ENST00000487996 CADPS2Q86UW7 1296 aa14.47□□□□□ -0.09
HLA-DMB-261ENST00000487996 RBM33Q96EV2 1170 aaKnown RBP14.47□□□□□ -0.09
HLA-DMB-261ENST00000487996 KNSTRNQ9Y448 316 aa14.47□□□□□ -0.09
HLA-DMB-261ENST00000487996 CABP1Q9NZU7 370 aa14.46□□□□□ -0.09
HLA-DMB-261ENST00000487996 ANP32CO43423 234 aa14.46□□□□□ -0.1
HLA-DMB-261ENST00000487996 XIRP1Q702N8 1843 aaKnown RBP14.45□□□□□ -0.1
HLA-DMB-261ENST00000487996 PRR36Q9H6K5 1346 aa14.45□□□□□ -0.1
HLA-DMB-261ENST00000487996 USP32Q8NFA0 1604 aa14.45□□□□□ -0.1
HLA-DMB-261ENST00000487996 PLEKHG3A1L390 1219 aa14.45□□□□□ -0.1
HLA-DMB-261ENST00000487996 ZNF692Q9BU19 519 aaPredicted RBP14.45□□□□□ -0.1
HLA-DMB-261ENST00000487996 A0A1W2PP64 1363 aa14.44□□□□□ -0.1
HLA-DMB-261ENST00000487996 NUTM2FA1L443 756 aa14.44□□□□□ -0.1
HLA-DMB-261ENST00000487996 PER1O15534 1290 aaPredicted RBP14.44□□□□□ -0.1
HLA-DMB-261ENST00000487996 KTN1Q86UP2 1357 aaKnown RBP14.43□□□□□ -0.1
HLA-DMB-261ENST00000487996 UBAP1LF5GYI3 381 aa14.43□□□□□ -0.1
HLA-DMB-261ENST00000487996 ILDR2Q71H61 639 aa14.43□□□□□ -0.1
HLA-DMB-261ENST00000487996 RNF39Q9H2S5 420 aa14.43□□□□□ -0.1
HLA-DMB-261ENST00000487996 NPC1L1Q9UHC9 1359 aa14.43□□□□□ -0.1
HLA-DMB-261ENST00000487996 RGPD8O14715 1765 aaPredicted RBP14.43□□□□□ -0.1
HLA-DMB-261ENST00000487996 CPSF1Q10570 1443 aaKnown RBP14.42□□□□□ -0.1
HLA-DMB-261ENST00000487996 CD163L1Q9NR16 1453 aa14.42□□□□□ -0.1
HLA-DMB-261ENST00000487996 NSD3Q9BZ95 1437 aa14.42□□□□□ -0.1
HLA-DMB-261ENST00000487996 CGNL1Q0VF96 1302 aa14.42□□□□□ -0.1
HLA-DMB-261ENST00000487996 AKAP12Q02952 1782 aa14.41□□□□□ -0.1
HLA-DMB-261ENST00000487996 C1orf167Q5SNV9 1468 aa14.41□□□□□ -0.1
HLA-DMB-261ENST00000487996 POLR3AO14802 1390 aaPredicted RBP14.41□□□□□ -0.1
HLA-DMB-261ENST00000487996 NSD2O96028 1365 aa14.41□□□□□ -0.1
HLA-DMB-261ENST00000487996 NGDNQ8NEJ9 315 aaKnown RBP14.41□□□□□ -0.1
HLA-DMB-261ENST00000487996 MST1RQ04912 1400 aa14.4□□□□□ -0.1
HLA-DMB-261ENST00000487996 EDC4Q6P2E9 1401 aaKnown RBP14.4□□□□□ -0.1
HLA-DMB-261ENST00000487996 KIF1AQ12756 1690 aa14.4□□□□□ -0.1
HLA-DMB-261ENST00000487996 ESCO1Q5FWF5 840 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms