RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RGS3P49796 1198 aa23.33■■□□□ 1.33
VIM-206ENST00000487938 PPLO60437 1756 aa23.32■■□□□ 1.32
VIM-206ENST00000487938 NGEFQ8N5V2 710 aa23.31■■□□□ 1.32
VIM-206ENST00000487938 QRICH2Q9H0J4 1663 aa23.31■■□□□ 1.32
VIM-206ENST00000487938 ADGRB1O14514 1584 aa23.31■■□□□ 1.32
VIM-206ENST00000487938 RPGRIP1LQ68CZ1 1315 aa23.3■■□□□ 1.32
VIM-206ENST00000487938 MTHFSP49914 203 aa23.3■■□□□ 1.32
VIM-206ENST00000487938 ABCC3O15438 1527 aa23.29■■□□□ 1.32
VIM-206ENST00000487938 RUNDC1Q96C34 613 aa23.29■■□□□ 1.32
VIM-206ENST00000487938 FAM161AQ3B820 660 aa23.28■■□□□ 1.32
VIM-206ENST00000487938 TCP11L2Q8N4U5 519 aa23.28■■□□□ 1.32
VIM-206ENST00000487938 SAFB2Q14151 953 aaKnown RBP eCLIP23.28■■□□□ 1.32
VIM-206ENST00000487938 C8orf34Q49A92 452 aa23.28■■□□□ 1.32
VIM-206ENST00000487938 IGHDP01880 384 aa23.27■■□□□ 1.32
VIM-206ENST00000487938 CANXP27824 592 aaKnown RBP23.27■■□□□ 1.32
VIM-206ENST00000487938 PANK1Q8TE04 598 aa23.27■■□□□ 1.32
VIM-206ENST00000487938 CYB5RLQ6IPT4 315 aa23.26■■□□□ 1.31
VIM-206ENST00000487938 DDRGK1Q96HY6 314 aa23.26■■□□□ 1.31
VIM-206ENST00000487938 ZC3H13Q5T200 1668 aaKnown RBP23.26■■□□□ 1.31
VIM-206ENST00000487938 DIP2CQ9Y2E4 1556 aa23.26■■□□□ 1.31
VIM-206ENST00000487938 CGNL1Q0VF96 1302 aa23.25■■□□□ 1.31
VIM-206ENST00000487938 SLC4A3P48751 1232 aa23.25■■□□□ 1.31
VIM-206ENST00000487938 FRAT1Q92837 279 aaPredicted RBP23.25■■□□□ 1.31
VIM-206ENST00000487938 CABP2Q9NPB3 220 aa23.25■■□□□ 1.31
VIM-206ENST00000487938 COG6Q9Y2V7 657 aa23.25■■□□□ 1.31
VIM-206ENST00000487938 VGFO15240 615 aaPredicted RBP23.25■■□□□ 1.31
VIM-206ENST00000487938 NEFMP07197 916 aa23.25■■□□□ 1.31
VIM-206ENST00000487938 SHPRHQ149N8 1683 aa23.25■■□□□ 1.31
VIM-206ENST00000487938 EVC2Q86UK5 1308 aa23.24■■□□□ 1.31
VIM-206ENST00000487938 PDE3AQ14432 1141 aa23.23■■□□□ 1.31
VIM-206ENST00000487938 STK26Q9P289 416 aa23.22■■□□□ 1.31
VIM-206ENST00000487938 SIGLEC1Q9BZZ2 1709 aa23.22■■□□□ 1.31
VIM-206ENST00000487938 RICTORQ6R327 1708 aa23.21■■□□□ 1.31
VIM-206ENST00000487938 CFAP53Q96M91 514 aa23.21■■□□□ 1.31
VIM-206ENST00000487938 CAMSAP1Q5T5Y3 1602 aa23.21■■□□□ 1.31
VIM-206ENST00000487938 IDI1Q13907 227 aa23.21■■□□□ 1.31
VIM-206ENST00000487938 GLI2P10070 1586 aa23.19■■□□□ 1.3
VIM-206ENST00000487938 RARSP54136 660 aaKnown RBP23.19■■□□□ 1.3
VIM-206ENST00000487938 CLUAP1Q96AJ1 413 aa23.19■■□□□ 1.3
VIM-206ENST00000487938 BCL2L13Q9BXK5 485 aa23.18■■□□□ 1.3
VIM-206ENST00000487938 PPM1GO15355 546 aaPredicted RBP23.17■■□□□ 1.3
VIM-206ENST00000487938 U2AF1L5P0DN76 240 aaPredicted RBP23.17■■□□□ 1.3
VIM-206ENST00000487938 U2AF1Q01081 240 aaKnown RBP eCLIP23.17■■□□□ 1.3
VIM-206ENST00000487938 TNNQ9UQP3 1299 aa23.17■■□□□ 1.3
VIM-206ENST00000487938 YEATS2Q9ULM3 1422 aa23.17■■□□□ 1.3
VIM-206ENST00000487938 WDR63Q8IWG1 891 aa23.17■■□□□ 1.3
VIM-206ENST00000487938 PHF23Q9BUL5 403 aaPredicted RBP23.17■■□□□ 1.3
VIM-206ENST00000487938 TULP4Q9NRJ4 1543 aa23.17■■□□□ 1.3
VIM-206ENST00000487938 ANKRD36BQ8N2N9 1353 aa23.16■■□□□ 1.3
VIM-206ENST00000487938 ARHGAP31Q2M1Z3 1444 aa23.15■■□□□ 1.3
VIM-206ENST00000487938 IQSEC2Q5JU85 1478 aa23.15■■□□□ 1.3
VIM-206ENST00000487938 NEXMIFQ5QGS0 1516 aa23.15■■□□□ 1.3
VIM-206ENST00000487938 DAXXQ9UER7 740 aaPredicted RBP23.15■■□□□ 1.3
VIM-206ENST00000487938 SRPK2P78362 688 aaKnown RBP23.14■■□□□ 1.29
VIM-206ENST00000487938 PUS7Q96PZ0 661 aaKnown RBP23.14■■□□□ 1.29
VIM-206ENST00000487938 ARHGEF28Q8N1W1 1705 aaKnown RBP23.13■■□□□ 1.29
VIM-206ENST00000487938 RLBP1P12271 317 aa23.13■■□□□ 1.29
VIM-206ENST00000487938 PIK3C2BO00750 1634 aa23.12■■□□□ 1.29
VIM-206ENST00000487938 USP32Q8NFA0 1604 aa23.12■■□□□ 1.29
VIM-206ENST00000487938 NINLQ9Y2I6 1382 aa23.12■■□□□ 1.29
VIM-206ENST00000487938 FAM69CQ0P6D2 419 aa23.12■■□□□ 1.29
VIM-206ENST00000487938 GGNBP2Q9H3C7 697 aa23.12■■□□□ 1.29
VIM-206ENST00000487938 USP35Q9P2H5 1018 aa23.11■■□□□ 1.29
VIM-206ENST00000487938 CCDC27Q2M243 656 aa23.11■■□□□ 1.29
VIM-206ENST00000487938 RIMBP3CA6NJZ7 1639 aa23.1■■□□□ 1.29
VIM-206ENST00000487938 RIMBP3BA6NNM3 1639 aa23.1■■□□□ 1.29
VIM-206ENST00000487938 RIMBP3Q9UFD9 1639 aa23.1■■□□□ 1.29
VIM-206ENST00000487938 MINK1Q8N4C8 1332 aaPredicted RBP23.09■■□□□ 1.29
VIM-206ENST00000487938 U2SURPO15042 1029 aaKnown RBP23.08■■□□□ 1.29
VIM-206ENST00000487938 PCDHB15Q9Y5E8 787 aa23.08■■□□□ 1.29
VIM-206ENST00000487938 A0A1W2PP64 1363 aa23.08■■□□□ 1.29
VIM-206ENST00000487938 NSD2O96028 1365 aa23.08■■□□□ 1.29
VIM-206ENST00000487938 SLC52A1Q9NWF4 448 aa23.08■■□□□ 1.29
VIM-206ENST00000487938 MYH16Q9H6N6 1097 aa23.07■■□□□ 1.28
VIM-206ENST00000487938 PRAM1Q96QH2 718 aa23.06■■□□□ 1.28
VIM-206ENST00000487938 TSR2Q969E8 191 aaKnown RBP23.05■■□□□ 1.28
VIM-206ENST00000487938 DIP2BQ9P265 1576 aa23.05■■□□□ 1.28
VIM-206ENST00000487938 SEC24BO95487 1268 aa23.05■■□□□ 1.28
VIM-206ENST00000487938 FBXO31Q5XUX0 539 aaPredicted RBP23.05■■□□□ 1.28
VIM-206ENST00000487938 POGKQ9P215 609 aa23.05■■□□□ 1.28
VIM-206ENST00000487938 NFKBIBQ15653 356 aa23.03■■□□□ 1.28
VIM-206ENST00000487938 PMFBP1Q8TBY8 1022 aa23.03■■□□□ 1.28
VIM-206ENST00000487938 ABCC11Q96J66 1382 aa23.03■■□□□ 1.28
VIM-206ENST00000487938 FYB1O15117 783 aa23.02■■□□□ 1.28
VIM-206ENST00000487938 MYO5BQ9ULV0 1848 aa23.02■■□□□ 1.28
VIM-206ENST00000487938 MAPK8IP3Q9UPT6 1336 aa23.02■■□□□ 1.28
VIM-206ENST00000487938 PLEKHF1Q96S99 279 aa23.01■■□□□ 1.27
VIM-206ENST00000487938 ZFYVE9O95405 1425 aa23.01■■□□□ 1.27
VIM-206ENST00000487938 USP19O94966 1318 aa23.01■■□□□ 1.27
VIM-206ENST00000487938 TMPOP42166 694 aaKnown RBP23■■□□□ 1.27
VIM-206ENST00000487938 TERF2IPQ9NYB0 399 aa23■■□□□ 1.27
VIM-206ENST00000487938 EXOSC9Q06265 439 aaKnown RBP22.99■■□□□ 1.27
VIM-206ENST00000487938 TRIM35Q9UPQ4 493 aa22.98■■□□□ 1.27
VIM-206ENST00000487938 PDZRN3Q9UPQ7 1066 aa22.98■■□□□ 1.27
VIM-206ENST00000487938 NCBP3Q53F19 620 aaKnown RBP22.98■■□□□ 1.27
VIM-206ENST00000487938 PTPRMP28827 1452 aa22.98■■□□□ 1.27
VIM-206ENST00000487938 PREX1Q8TCU6 1659 aa22.97■■□□□ 1.27
VIM-206ENST00000487938 AAMPQ13685 434 aa22.97■■□□□ 1.27
VIM-206ENST00000487938 ZKSCAN2Q63HK3 967 aa22.97■■□□□ 1.27
VIM-206ENST00000487938 CDK19Q9BWU1 502 aa22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms