RNA–Protein interactions for RNA: ENST00000487565.5

GARNL3-218, Transcript of GTPase activating Rap/RanGAP domain like 3, human

TSL 4

Gene GARNL3, Length 554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
GARNL3-218	ENST00000487565	ADGRL1	O94910	1474 aa		11.63	□□□□□ -0.55
GARNL3-218	ENST00000487565	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
GARNL3-218	ENST00000487565	PPRC1	Q5VV67	1664 aa	Known RBP	11.62	□□□□□ -0.55
GARNL3-218	ENST00000487565	ARHGEF5	Q12774	1597 aa		11.61	□□□□□ -0.55
GARNL3-218	ENST00000487565	KIAA1107	Q9UPP5	1409 aa		11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	DNMT1	P26358	1616 aa	Known RBP	11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	CCDC141	Q6ZP82	1450 aa		11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	TRIM26	Q12899	539 aa	Predicted RBP	11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	NBR1	Q14596	966 aa		11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	KCNV2	Q8TDN2	545 aa		11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	RBM33	Q96EV2	1170 aa	Known RBP	11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	AKNA	Q7Z591	1439 aa		11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	ZNF644	Q9H582	1327 aa	Predicted RBP	11.6	□□□□□ -0.55
GARNL3-218	ENST00000487565	TSPOAP1	O95153	1857 aa		11.59	□□□□□ -0.55
GARNL3-218	ENST00000487565	CROCC2	H7BZ55	1655 aa		11.59	□□□□□ -0.55
GARNL3-218	ENST00000487565	SHANK2	Q9UPX8	1470 aa		11.58	□□□□□ -0.56
GARNL3-218	ENST00000487565	ARHGEF1	Q92888	912 aa	Known RBP	11.58	□□□□□ -0.56
GARNL3-218	ENST00000487565	STAC3	Q96MF2	364 aa		11.58	□□□□□ -0.56
GARNL3-218	ENST00000487565	VPS9D1	Q9Y2B5	631 aa		11.58	□□□□□ -0.56
GARNL3-218	ENST00000487565	DAPK1	P53355	1430 aa		11.58	□□□□□ -0.56
GARNL3-218	ENST00000487565	POGZ	Q7Z3K3	1410 aa		11.58	□□□□□ -0.56
GARNL3-218	ENST00000487565	GRXCR2	A6NFK2	248 aa		11.57	□□□□□ -0.56
GARNL3-218	ENST00000487565	SCAPER	Q9BY12	1400 aa		11.57	□□□□□ -0.56
GARNL3-218	ENST00000487565	MBD5	Q9P267	1494 aa		11.57	□□□□□ -0.56
GARNL3-218	ENST00000487565	ARHGEF12	Q9NZN5	1544 aa		11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	PPP1R3G	B7ZBB8	358 aa		11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	HR	O43593	1189 aa		11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	ZBED2	Q9BTP6	218 aa		11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	SLC4A5	Q9BY07	1137 aa		11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	DENND4B	O75064	1496 aa	Predicted RBP	11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	ZNF518A	Q6AHZ1	1483 aa		11.56	□□□□□ -0.56
GARNL3-218	ENST00000487565	ABCC5	O15440	1437 aa		11.55	□□□□□ -0.56
GARNL3-218	ENST00000487565	C6orf132	Q5T0Z8	1188 aa		11.55	□□□□□ -0.56
GARNL3-218	ENST00000487565	C9orf84	Q5VXU9	1444 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	TRAPPC8	Q9Y2L5	1435 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	MAP3K7	O43318	606 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	COL9A1	P20849	921 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	ITGAE	P38570	1179 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	ZFYVE16	Q7Z3T8	1539 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	KDM5C	P41229	1560 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	MAST1	Q9Y2H9	1570 aa		11.54	□□□□□ -0.56
GARNL3-218	ENST00000487565	ADGB	Q8N7X0	1667 aa		11.53	□□□□□ -0.56
GARNL3-218	ENST00000487565	HNRNPM	P52272	730 aa	Known RBP eCLIP	11.53	□□□□□ -0.56
GARNL3-218	ENST00000487565	EN1	Q05925	392 aa	Predicted RBP	11.53	□□□□□ -0.56
GARNL3-218	ENST00000487565	FRMPD1	Q5SYB0	1578 aa		11.53	□□□□□ -0.56
GARNL3-218	ENST00000487565	INO80	Q9ULG1	1556 aa	Predicted RBP	11.53	□□□□□ -0.56
GARNL3-218	ENST00000487565	ZMYM4	Q5VZL5	1548 aa		11.52	□□□□□ -0.57
GARNL3-218	ENST00000487565	HECW2	Q9P2P5	1572 aa		11.52	□□□□□ -0.57
GARNL3-218	ENST00000487565	RICTOR	Q6R327	1708 aa		11.52	□□□□□ -0.57
GARNL3-218	ENST00000487565	PTPRK	Q15262	1439 aa		11.52	□□□□□ -0.57
GARNL3-218	ENST00000487565	ADGRL2	O95490	1459 aa		11.51	□□□□□ -0.57
GARNL3-218	ENST00000487565	ATP7A	Q04656	1500 aa		11.51	□□□□□ -0.57
GARNL3-218	ENST00000487565	RSPH4A	Q5TD94	716 aa		11.51	□□□□□ -0.57
GARNL3-218	ENST00000487565	PLXNC1	O60486	1568 aa		11.5	□□□□□ -0.57
GARNL3-218	ENST00000487565	KDM6B	O15054	1643 aa		11.5	□□□□□ -0.57
GARNL3-218	ENST00000487565	PROX2	Q3B8N5	592 aa		11.5	□□□□□ -0.57
GARNL3-218	ENST00000487565	ROCK1	Q13464	1354 aa		11.5	□□□□□ -0.57
GARNL3-218	ENST00000487565	TSR1	Q2NL82	804 aa	Known RBP	11.49	□□□□□ -0.57
GARNL3-218	ENST00000487565	PCGF6	Q9BYE7	350 aa		11.49	□□□□□ -0.57
GARNL3-218	ENST00000487565	SPAG9	O60271	1321 aa	Known RBP	11.49	□□□□□ -0.57
GARNL3-218	ENST00000487565	ANKRD30A	Q9BXX3	1397 aa		11.49	□□□□□ -0.57
GARNL3-218	ENST00000487565	GCC2	Q8IWJ2	1684 aa		11.49	□□□□□ -0.57
GARNL3-218	ENST00000487565	TSPY4	P0CV99	314 aa		11.48	□□□□□ -0.57
GARNL3-218	ENST00000487565	TSPY10	P0CW01	314 aa		11.48	□□□□□ -0.57
GARNL3-218	ENST00000487565	RTEL1-TNFRSF6B	F6WH68	1400 aa		11.48	□□□□□ -0.57
GARNL3-218	ENST00000487565	ARHGEF40	Q8TER5	1519 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	MLH3	Q9UHC1	1453 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	HFM1	A2PYH4	1435 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	KIF15	Q9NS87	1388 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	OSBP	P22059	807 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	PRIM1	P49642	420 aa	Known RBP	11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	AFAP1	Q8N556	730 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	CHIC2	Q9UKJ5	165 aa		11.47	□□□□□ -0.57
GARNL3-218	ENST00000487565	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.46	□□□□□ -0.57
GARNL3-218	ENST00000487565	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.46	□□□□□ -0.57
GARNL3-218	ENST00000487565	RAPGEF3	O95398	923 aa		11.46	□□□□□ -0.57
GARNL3-218	ENST00000487565	MRPL50	Q8N5N7	158 aa	Known RBP	11.46	□□□□□ -0.57
GARNL3-218	ENST00000487565	NBPF3	Q9H094	633 aa		11.46	□□□□□ -0.57
GARNL3-218	ENST00000487565	ABCA6	Q8N139	1617 aa		11.46	□□□□□ -0.58
GARNL3-218	ENST00000487565	MAGI2	Q86UL8	1455 aa		11.45	□□□□□ -0.58
GARNL3-218	ENST00000487565	KCTD12	Q96CX2	325 aa	Known RBP	11.45	□□□□□ -0.58
GARNL3-218	ENST00000487565	KDM2A	Q9Y2K7	1162 aa		11.45	□□□□□ -0.58
GARNL3-218	ENST00000487565	DIP2C	Q9Y2E4	1556 aa		11.45	□□□□□ -0.58
GARNL3-218	ENST00000487565	NCOA1	Q15788	1441 aa		11.44	□□□□□ -0.58
GARNL3-218	ENST00000487565	KIDINS220	Q9ULH0	1771 aa		11.44	□□□□□ -0.58
GARNL3-218	ENST00000487565	GOLGA8CP	A6NN73	597 aa		11.44	□□□□□ -0.58
GARNL3-218	ENST00000487565	MLLT3	P42568	568 aa	Predicted RBP	11.44	□□□□□ -0.58
GARNL3-218	ENST00000487565	RABGEF1	Q9UJ41	708 aa		11.44	□□□□□ -0.58
GARNL3-218	ENST00000487565	DUOX2	Q9NRD8	1548 aa		11.44	□□□□□ -0.58
GARNL3-218	ENST00000487565	NAIP	Q13075	1403 aa		11.43	□□□□□ -0.58
GARNL3-218	ENST00000487565	RRP7BP	Q9NSQ0	103 aa		11.43	□□□□□ -0.58
GARNL3-218	ENST00000487565	KIAA1468	Q9P260	1216 aa		11.43	□□□□□ -0.58
GARNL3-218	ENST00000487565	ERBIN	Q96RT1	1412 aa		11.43	□□□□□ -0.58
GARNL3-218	ENST00000487565	YEATS2	Q9ULM3	1422 aa		11.43	□□□□□ -0.58
GARNL3-218	ENST00000487565	TRIM6-TRIM34	B2RNG4	842 aa		11.42	□□□□□ -0.58
GARNL3-218	ENST00000487565	SETD5	Q9C0A6	1442 aa		11.42	□□□□□ -0.58
GARNL3-218	ENST00000487565	ONECUT3	O60422	494 aa	Predicted RBP	11.41	□□□□□ -0.58
GARNL3-218	ENST00000487565	VSIG10	Q8N0Z9	540 aa		11.41	□□□□□ -0.58
GARNL3-218	ENST00000487565	ANKRD50	Q9ULJ7	1429 aa		11.41	□□□□□ -0.58
GARNL3-218	ENST00000487565	A2M	P01023	1474 aa		11.4	□□□□□ -0.58

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