RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 TERF1P54274 439 aa13.36□□□□□ -0.27
CCDC171-208ENST00000486641 MVPQ14764 893 aaKnown RBP13.36□□□□□ -0.27
CCDC171-208ENST00000486641 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.36□□□□□ -0.27
CCDC171-208ENST00000486641 CIZ1Q9ULV3 898 aaPredicted RBP13.36□□□□□ -0.27
CCDC171-208ENST00000486641 MYOM1P52179 1685 aa13.36□□□□□ -0.27
CCDC171-208ENST00000486641 PLEKHG5O94827 1062 aa13.35□□□□□ -0.27
CCDC171-208ENST00000486641 MSNP26038 577 aaKnown RBP13.35□□□□□ -0.27
CCDC171-208ENST00000486641 RBM25P49756 843 aaKnown RBP13.35□□□□□ -0.27
CCDC171-208ENST00000486641 FAM13BQ9NYF5 915 aa13.35□□□□□ -0.27
CCDC171-208ENST00000486641 ARHGEF5Q12774 1597 aa13.35□□□□□ -0.27
CCDC171-208ENST00000486641 HSP90AB1P08238 724 aaKnown RBP13.35□□□□□ -0.27
CCDC171-208ENST00000486641 IQGAP1P46940 1657 aa13.35□□□□□ -0.27
CCDC171-208ENST00000486641 R3HCC1Q9Y3T6 440 aaKnown RBP13.34□□□□□ -0.27
CCDC171-208ENST00000486641 PTMSP20962 102 aa13.34□□□□□ -0.27
CCDC171-208ENST00000486641 FOXD4L1Q9NU39 408 aa13.34□□□□□ -0.27
CCDC171-208ENST00000486641 ANP32BQ92688 251 aaKnown RBP13.33□□□□□ -0.28
CCDC171-208ENST00000486641 CARD14Q9BXL6 1004 aa13.33□□□□□ -0.28
CCDC171-208ENST00000486641 MAGI1Q96QZ7 1491 aaPredicted RBP13.33□□□□□ -0.28
CCDC171-208ENST00000486641 SCAPERQ9BY12 1400 aa13.32□□□□□ -0.28
CCDC171-208ENST00000486641 TCP11L2Q8N4U5 519 aa13.32□□□□□ -0.28
CCDC171-208ENST00000486641 MAP7D2Q96T17 732 aa13.32□□□□□ -0.28
CCDC171-208ENST00000486641 WDR63Q8IWG1 891 aa13.31□□□□□ -0.28
CCDC171-208ENST00000486641 RUNDC1Q96C34 613 aa13.31□□□□□ -0.28
CCDC171-208ENST00000486641 UNC13BO14795 1591 aa13.31□□□□□ -0.28
CCDC171-208ENST00000486641 CD2BP2O95400 341 aaKnown RBP13.31□□□□□ -0.28
CCDC171-208ENST00000486641 HDAC1Q13547 482 aaPredicted RBP13.31□□□□□ -0.28
CCDC171-208ENST00000486641 DZIP1LQ8IYY4 767 aaKnown RBP13.31□□□□□ -0.28
CCDC171-208ENST00000486641 PHF23Q9BUL5 403 aaPredicted RBP13.31□□□□□ -0.28
CCDC171-208ENST00000486641 POLR3AO14802 1390 aaPredicted RBP13.31□□□□□ -0.28
CCDC171-208ENST00000486641 SSFA2P28290 1259 aa13.3□□□□□ -0.28
CCDC171-208ENST00000486641 ZKSCAN2Q63HK3 967 aa13.3□□□□□ -0.28
CCDC171-208ENST00000486641 KIF2CQ99661 725 aa13.3□□□□□ -0.28
CCDC171-208ENST00000486641 SCAF11Q99590 1463 aaKnown RBP13.3□□□□□ -0.28
CCDC171-208ENST00000486641 FTSJ3Q8IY81 847 aaKnown RBP13.3□□□□□ -0.28
CCDC171-208ENST00000486641 KLHL40Q2TBA0 621 aa13.29□□□□□ -0.28
CCDC171-208ENST00000486641 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.29□□□□□ -0.28
CCDC171-208ENST00000486641 DDX49Q9Y6V7 483 aaKnown RBP13.29□□□□□ -0.28
CCDC171-208ENST00000486641 GRIN2AQ12879 1464 aa13.29□□□□□ -0.28
CCDC171-208ENST00000486641 MADDQ8WXG6 1647 aa13.29□□□□□ -0.28
CCDC171-208ENST00000486641 ATP10AO60312 1499 aa13.29□□□□□ -0.28
CCDC171-208ENST00000486641 IQGAP3Q86VI3 1631 aa13.28□□□□□ -0.28
CCDC171-208ENST00000486641 IBTKQ9P2D0 1353 aaPredicted RBP13.28□□□□□ -0.28
CCDC171-208ENST00000486641 UQCRHLA0A096LP55 91 aa13.28□□□□□ -0.28
CCDC171-208ENST00000486641 ZNF500O60304 480 aaPredicted RBP13.28□□□□□ -0.28
CCDC171-208ENST00000486641 UQCRHP07919 91 aa13.28□□□□□ -0.28
CCDC171-208ENST00000486641 XPCQ01831 940 aaPredicted RBP13.28□□□□□ -0.28
CCDC171-208ENST00000486641 NOL7Q9UMY1 257 aaKnown RBP13.28□□□□□ -0.28
CCDC171-208ENST00000486641 SHROOM2Q13796 1616 aa13.28□□□□□ -0.28
CCDC171-208ENST00000486641 ATP10BO94823 1461 aa13.28□□□□□ -0.28
CCDC171-208ENST00000486641 HS1BP3Q53T59 392 aa13.28□□□□□ -0.28
CCDC171-208ENST00000486641 SAMD9LQ8IVG5 1584 aa13.27□□□□□ -0.28
CCDC171-208ENST00000486641 GOLGA6L22H0YM25 854 aa13.27□□□□□ -0.28
CCDC171-208ENST00000486641 CLEC17AQ6ZS10 378 aa13.27□□□□□ -0.28
CCDC171-208ENST00000486641 KDM5AP29375 1690 aaKnown RBP13.27□□□□□ -0.29
CCDC171-208ENST00000486641 SHPRHQ149N8 1683 aa13.27□□□□□ -0.29
CCDC171-208ENST00000486641 IQSEC2Q5JU85 1478 aa13.27□□□□□ -0.29
CCDC171-208ENST00000486641 MRC2Q9UBG0 1479 aa13.27□□□□□ -0.29
CCDC171-208ENST00000486641 K7ELQ4 463 aaPredicted RBP13.27□□□□□ -0.29
CCDC171-208ENST00000486641 BAG4O95429 457 aaKnown RBP13.27□□□□□ -0.29
CCDC171-208ENST00000486641 RSPH4AQ5TD94 716 aa13.27□□□□□ -0.29
CCDC171-208ENST00000486641 SMAP1Q8IYB5 467 aaPredicted RBP13.27□□□□□ -0.29
CCDC171-208ENST00000486641 ARID3AQ99856 593 aa13.27□□□□□ -0.29
CCDC171-208ENST00000486641 RBM42Q9BTD8 480 aaKnown RBP13.27□□□□□ -0.29
CCDC171-208ENST00000486641 CEP152O94986 1710 aa13.26□□□□□ -0.29
CCDC171-208ENST00000486641 ABCA8O94911 1581 aa13.26□□□□□ -0.29
CCDC171-208ENST00000486641 ZNF445P59923 1031 aa13.26□□□□□ -0.29
CCDC171-208ENST00000486641 GAS2L2Q8NHY3 880 aa13.26□□□□□ -0.29
CCDC171-208ENST00000486641 TNNT2P45379 298 aaPredicted RBP13.25□□□□□ -0.29
CCDC171-208ENST00000486641 KANK1Q14678 1352 aa13.25□□□□□ -0.29
CCDC171-208ENST00000486641 TRIM27P14373 513 aa13.25□□□□□ -0.29
CCDC171-208ENST00000486641 ITPRIPQ8IWB1 547 aa13.25□□□□□ -0.29
CCDC171-208ENST00000486641 RBSNQ9H1K0 784 aa13.25□□□□□ -0.29
CCDC171-208ENST00000486641 ERCC6Q03468 1493 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 NUCB1Q02818 461 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 CCDC27Q2M243 656 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 PDLIM2Q96JY6 352 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 LNPKQ9C0E8 428 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 DDX19BQ9UMR2 479 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 A0A0U1RQG5 324 aaPredicted RBP13.24□□□□□ -0.29
CCDC171-208ENST00000486641 ZSCAN23Q3MJ62 389 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 CDC42BPBQ9Y5S2 1711 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 AK9Q5TCS8 1911 aa13.24□□□□□ -0.29
CCDC171-208ENST00000486641 DYNC1I1O14576 645 aa13.23□□□□□ -0.29
CCDC171-208ENST00000486641 NCLP19338 710 aaKnown RBP13.23□□□□□ -0.29
CCDC171-208ENST00000486641 CAVIN1Q6NZI2 390 aaKnown RBP13.23□□□□□ -0.29
CCDC171-208ENST00000486641 SMC4Q9NTJ3 1288 aa13.23□□□□□ -0.29
CCDC171-208ENST00000486641 MCTP1Q6DN14 999 aa13.23□□□□□ -0.29
CCDC171-208ENST00000486641 MTERF4Q7Z6M4 381 aaKnown RBP13.22□□□□□ -0.29
CCDC171-208ENST00000486641 MORC1Q86VD1 984 aa13.22□□□□□ -0.29
CCDC171-208ENST00000486641 TSR2Q969E8 191 aaKnown RBP13.22□□□□□ -0.29
CCDC171-208ENST00000486641 PRDM10Q9NQV6 1147 aa13.22□□□□□ -0.29
CCDC171-208ENST00000486641 ERVK-7P63135 1459 aa13.22□□□□□ -0.29
CCDC171-208ENST00000486641 ZKSCAN5Q9Y2L8 839 aa13.22□□□□□ -0.29
CCDC171-208ENST00000486641 PRIM1P49642 420 aaKnown RBP13.21□□□□□ -0.29
CCDC171-208ENST00000486641 CHD1LQ86WJ1 897 aa13.21□□□□□ -0.29
CCDC171-208ENST00000486641 ZBTB40Q9NUA8 1239 aa13.21□□□□□ -0.29
CCDC171-208ENST00000486641 TTC37Q6PGP7 1564 aa13.21□□□□□ -0.3
CCDC171-208ENST00000486641 EXOSC9Q06265 439 aaKnown RBP13.21□□□□□ -0.3
CCDC171-208ENST00000486641 CSPP1Q1MSJ5 1256 aa13.21□□□□□ -0.3
CCDC171-208ENST00000486641 BMP2KLQ5H9B9 411 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms