RNA–Protein interactions for RNA: ENST00000485994.5

VPS50-218, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 573 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-218ENST00000485994 MSH6P52701 1360 aa10.38□□□□□ -0.75
VPS50-218ENST00000485994 NRXN3Q9Y4C0 1643 aa10.37□□□□□ -0.75
VPS50-218ENST00000485994 CCDC144AA2RUR9 1427 aa10.37□□□□□ -0.75
VPS50-218ENST00000485994 RAB3GAP2Q9H2M9 1393 aa10.37□□□□□ -0.75
VPS50-218ENST00000485994 SPATA31E1Q6ZUB1 1445 aa10.36□□□□□ -0.75
VPS50-218ENST00000485994 CADPS2Q86UW7 1296 aa10.36□□□□□ -0.75
VPS50-218ENST00000485994 METP08581 1390 aa10.36□□□□□ -0.75
VPS50-218ENST00000485994 ANKRD30BQ9BXX2 1392 aa10.36□□□□□ -0.75
VPS50-218ENST00000485994 RBM33Q96EV2 1170 aaKnown RBP10.35□□□□□ -0.75
VPS50-218ENST00000485994 STAC3Q96MF2 364 aa10.35□□□□□ -0.75
VPS50-218ENST00000485994 PPLO60437 1756 aa10.34□□□□□ -0.75
VPS50-218ENST00000485994 PRAG1Q86YV5 1406 aa10.34□□□□□ -0.75
VPS50-218ENST00000485994 DCCP43146 1447 aa10.33□□□□□ -0.76
VPS50-218ENST00000485994 PRR29P0C7W0 189 aa10.33□□□□□ -0.76
VPS50-218ENST00000485994 XRN1Q8IZH2 1706 aaKnown RBP10.33□□□□□ -0.76
VPS50-218ENST00000485994 DISP3Q9P2K9 1392 aa10.32□□□□□ -0.76
VPS50-218ENST00000485994 ATF3P18847 181 aa10.32□□□□□ -0.76
VPS50-218ENST00000485994 RGL3Q3MIN7 710 aa10.32□□□□□ -0.76
VPS50-218ENST00000485994 SIRT1Q96EB6 747 aa10.32□□□□□ -0.76
VPS50-218ENST00000485994 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.32□□□□□ -0.76
VPS50-218ENST00000485994 ADGRF5Q8IZF2 1346 aa10.32□□□□□ -0.76
VPS50-218ENST00000485994 SETD1AO15047 1707 aaKnown RBP10.3□□□□□ -0.76
VPS50-218ENST00000485994 C14orf37Q86TY3 774 aa10.3□□□□□ -0.76
VPS50-218ENST00000485994 C14orf93Q9H972 538 aaKnown RBP10.3□□□□□ -0.76
VPS50-218ENST00000485994 PTCH1Q13635 1447 aa10.3□□□□□ -0.76
VPS50-218ENST00000485994 ABCC11Q96J66 1382 aa10.29□□□□□ -0.76
VPS50-218ENST00000485994 ROBO1Q9Y6N7 1651 aa10.29□□□□□ -0.76
VPS50-218ENST00000485994 CD44P16070 742 aaKnown RBP10.29□□□□□ -0.76
VPS50-218ENST00000485994 IFT172Q9UG01 1749 aa10.29□□□□□ -0.76
VPS50-218ENST00000485994 NRXN1Q9ULB1 1477 aa10.28□□□□□ -0.76
VPS50-218ENST00000485994 TECPR2O15040 1411 aa10.27□□□□□ -0.77
VPS50-218ENST00000485994 PIK3C2GO75747 1445 aa10.27□□□□□ -0.77
VPS50-218ENST00000485994 ADGRL3Q9HAR2 1447 aa10.27□□□□□ -0.77
VPS50-218ENST00000485994 BRINP3Q76B58 766 aa10.27□□□□□ -0.77
VPS50-218ENST00000485994 LRPPRCP42704 1394 aaKnown RBP10.26□□□□□ -0.77
VPS50-218ENST00000485994 ROBO2Q9HCK4 1378 aa10.26□□□□□ -0.77
VPS50-218ENST00000485994 MYOM2P54296 1465 aa10.26□□□□□ -0.77
VPS50-218ENST00000485994 ILDR2Q71H61 639 aa10.26□□□□□ -0.77
VPS50-218ENST00000485994 MST1RQ04912 1400 aa10.25□□□□□ -0.77
VPS50-218ENST00000485994 DHX57Q6P158 1386 aaKnown RBP10.25□□□□□ -0.77
VPS50-218ENST00000485994 JCADQ9P266 1359 aa10.25□□□□□ -0.77
VPS50-218ENST00000485994 MED1Q15648 1581 aaPredicted RBP10.24□□□□□ -0.77
VPS50-218ENST00000485994 FARP1Q9Y4F1 1045 aaPredicted RBP10.24□□□□□ -0.77
VPS50-218ENST00000485994 AHDC1Q5TGY3 1603 aaPredicted RBP10.24□□□□□ -0.77
VPS50-218ENST00000485994 CFAP70Q5T0N1 1121 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 TMEM132EQ6IEE7 984 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 DCAF11Q8TEB1 546 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 LRRC59Q96AG4 307 aaKnown RBP10.23□□□□□ -0.77
VPS50-218ENST00000485994 PLSCR2Q9NRY7 297 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 PHLPP1O60346 1717 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 SPATA31A6Q5VVP1 1343 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 C1orf167Q5SNV9 1468 aa10.23□□□□□ -0.77
VPS50-218ENST00000485994 SOCS7O14512 581 aa10.22□□□□□ -0.77
VPS50-218ENST00000485994 YTHDC2Q9H6S0 1430 aaKnown RBP10.22□□□□□ -0.77
VPS50-218ENST00000485994 WAPLQ7Z5K2 1190 aa10.21□□□□□ -0.77
VPS50-218ENST00000485994 RGS17Q9UGC6 210 aaPredicted RBP10.21□□□□□ -0.77
VPS50-218ENST00000485994 COL16A1Q07092 1604 aaPredicted RBP10.21□□□□□ -0.78
VPS50-218ENST00000485994 KNDC1Q76NI1 1749 aa10.21□□□□□ -0.78
VPS50-218ENST00000485994 NALCNQ8IZF0 1738 aa10.21□□□□□ -0.78
VPS50-218ENST00000485994 LAMC1P11047 1609 aa10.2□□□□□ -0.78
VPS50-218ENST00000485994 STK26Q9P289 416 aa10.2□□□□□ -0.78
VPS50-218ENST00000485994 ASXL1Q8IXJ9 1541 aa10.19□□□□□ -0.78
VPS50-218ENST00000485994 SOS2Q07890 1332 aaPredicted RBP10.19□□□□□ -0.78
VPS50-218ENST00000485994 ORAI2Q96SN7 254 aa10.19□□□□□ -0.78
VPS50-218ENST00000485994 KDM2AQ9Y2K7 1162 aa10.19□□□□□ -0.78
VPS50-218ENST00000485994 DLC1Q96QB1 1528 aa10.18□□□□□ -0.78
VPS50-218ENST00000485994 NHSL1Q5SYE7 1610 aa10.18□□□□□ -0.78
VPS50-218ENST00000485994 CDC42BPGQ6DT37 1551 aa10.18□□□□□ -0.78
VPS50-218ENST00000485994 SHPRHQ149N8 1683 aa10.17□□□□□ -0.78
VPS50-218ENST00000485994 ADGRB1O14514 1584 aa10.17□□□□□ -0.78
VPS50-218ENST00000485994 PLEKHH1Q9ULM0 1364 aa10.16□□□□□ -0.78
VPS50-218ENST00000485994 ESCO1Q5FWF5 840 aa10.16□□□□□ -0.78
VPS50-218ENST00000485994 NPHP3Q7Z494 1330 aa10.15□□□□□ -0.78
VPS50-218ENST00000485994 TRIM26Q12899 539 aaPredicted RBP10.15□□□□□ -0.78
VPS50-218ENST00000485994 PRAM1Q96QH2 718 aa10.15□□□□□ -0.78
VPS50-218ENST00000485994 DDX17Q92841 729 aaKnown RBP10.14□□□□□ -0.79
VPS50-218ENST00000485994 POGKQ9P215 609 aa10.14□□□□□ -0.79
VPS50-218ENST00000485994 TRAK1Q9UPV9 953 aa10.14□□□□□ -0.79
VPS50-218ENST00000485994 PNPLA6Q8IY17 1366 aa10.14□□□□□ -0.79
VPS50-218ENST00000485994 KIAA1210Q9ULL0 1709 aa10.13□□□□□ -0.79
VPS50-218ENST00000485994 FOXO3O43524 673 aa10.13□□□□□ -0.79
VPS50-218ENST00000485994 ZNF772Q68DY9 489 aaPredicted RBP10.13□□□□□ -0.79
VPS50-218ENST00000485994 POTEAQ6S8J7 498 aa10.13□□□□□ -0.79
VPS50-218ENST00000485994 L3MBTL2Q969R5 705 aa10.12□□□□□ -0.79
VPS50-218ENST00000485994 DCBLD2Q96PD2 775 aa10.12□□□□□ -0.79
VPS50-218ENST00000485994 FMN2Q9NZ56 1722 aa10.12□□□□□ -0.79
VPS50-218ENST00000485994 ANKARQ7Z5J8 1434 aa10.11□□□□□ -0.79
VPS50-218ENST00000485994 WASLO00401 505 aaPredicted RBP10.11□□□□□ -0.79
VPS50-218ENST00000485994 PSME1Q06323 249 aa10.11□□□□□ -0.79
VPS50-218ENST00000485994 PHF8Q9UPP1 1060 aa10.11□□□□□ -0.79
VPS50-218ENST00000485994 LRP6O75581 1613 aa10.11□□□□□ -0.79
VPS50-218ENST00000485994 MEX3CQ5U5Q3 659 aaKnown RBP10.1□□□□□ -0.79
VPS50-218ENST00000485994 KRT28Q7Z3Y7 464 aa10.1□□□□□ -0.79
VPS50-218ENST00000485994 SIN3AQ96ST3 1273 aa10.1□□□□□ -0.79
VPS50-218ENST00000485994 EIF3AQ14152 1382 aaKnown RBP10.1□□□□□ -0.79
VPS50-218ENST00000485994 PXDNQ92626 1479 aa10.1□□□□□ -0.79
VPS50-218ENST00000485994 ADGRB2O60241 1585 aa10.09□□□□□ -0.79
VPS50-218ENST00000485994 SPATA31A3Q5VYP0 1347 aa10.09□□□□□ -0.79
VPS50-218ENST00000485994 RGPD8O14715 1765 aaPredicted RBP10.09□□□□□ -0.79
VPS50-218ENST00000485994 NUTM2FA1L443 756 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms