RNA–Protein interactions for RNA: ENST00000482590.1

CLK1-212, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 626 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-212ENST00000482590 MAP2K5Q13163 448 aa12.48□□□□□ -0.41
CLK1-212ENST00000482590 LMOD2Q6P5Q4 547 aa12.47□□□□□ -0.41
CLK1-212ENST00000482590 POTECB2RU33 542 aa12.46□□□□□ -0.41
CLK1-212ENST00000482590 CD46P15529 392 aa12.46□□□□□ -0.41
CLK1-212ENST00000482590 ZNF775Q96BV0 537 aaPredicted RBP12.46□□□□□ -0.41
CLK1-212ENST00000482590 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
CLK1-212ENST00000482590 MSS51Q4VC12 460 aa12.45□□□□□ -0.42
CLK1-212ENST00000482590 IRF6O14896 467 aa12.44□□□□□ -0.42
CLK1-212ENST00000482590 CD2BP2O95400 341 aaKnown RBP12.44□□□□□ -0.42
CLK1-212ENST00000482590 ST8SIA5O15466 376 aa12.43□□□□□ -0.42
CLK1-212ENST00000482590 AAASQ9NRG9 546 aa12.42□□□□□ -0.42
CLK1-212ENST00000482590 TOR4AQ9NXH8 423 aa12.42□□□□□ -0.42
CLK1-212ENST00000482590 MDM2Q00987 491 aaPredicted RBP12.41□□□□□ -0.42
CLK1-212ENST00000482590 KDM4AO75164 1064 aa12.4□□□□□ -0.42
CLK1-212ENST00000482590 Q3C1V9 767 aa12.4□□□□□ -0.42
CLK1-212ENST00000482590 VSIG10Q8N0Z9 540 aa12.4□□□□□ -0.42
CLK1-212ENST00000482590 MINK1Q8N4C8 1332 aaPredicted RBP12.39□□□□□ -0.43
CLK1-212ENST00000482590 TULP1O00294 542 aaPredicted RBP12.39□□□□□ -0.43
CLK1-212ENST00000482590 MMP16P51512 607 aa12.37□□□□□ -0.43
CLK1-212ENST00000482590 HLA-CQ95604 372 aa12.37□□□□□ -0.43
CLK1-212ENST00000482590 ZBTB24O43167 697 aaPredicted RBP12.36□□□□□ -0.43
CLK1-212ENST00000482590 CYP4X1Q8N118 509 aa12.36□□□□□ -0.43
CLK1-212ENST00000482590 CCDC102AQ96A19 550 aa12.36□□□□□ -0.43
CLK1-212ENST00000482590 AVPP01185 164 aa12.35□□□□□ -0.43
CLK1-212ENST00000482590 CRIPAKQ8N1N5 446 aa12.35□□□□□ -0.43
CLK1-212ENST00000482590 USB1Q9BQ65 265 aaKnown RBP12.35□□□□□ -0.43
CLK1-212ENST00000482590 DXOO77932 396 aaKnown RBP12.33□□□□□ -0.44
CLK1-212ENST00000482590 USP46P62068 366 aa12.33□□□□□ -0.44
CLK1-212ENST00000482590 HOXA2O43364 376 aa12.32□□□□□ -0.44
CLK1-212ENST00000482590 TRIM32Q13049 653 aa12.32□□□□□ -0.44
CLK1-212ENST00000482590 DACH1Q9UI36 760 aa12.32□□□□□ -0.44
CLK1-212ENST00000482590 WNT7AO00755 349 aa12.3□□□□□ -0.44
CLK1-212ENST00000482590 GPCPD1Q9NPB8 672 aa12.3□□□□□ -0.44
CLK1-212ENST00000482590 TTC24A2A3L6 582 aaPredicted RBP12.29□□□□□ -0.44
CLK1-212ENST00000482590 GUCA2AQ02747 115 aa12.29□□□□□ -0.44
CLK1-212ENST00000482590 FAM217BQ9NTX9 383 aaPredicted RBP12.29□□□□□ -0.44
CLK1-212ENST00000482590 CLCN1P35523 988 aa12.28□□□□□ -0.44
CLK1-212ENST00000482590 AXIN1O15169 862 aa12.27□□□□□ -0.45
CLK1-212ENST00000482590 CTC1Q2NKJ3 1217 aa12.26□□□□□ -0.45
CLK1-212ENST00000482590 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.26□□□□□ -0.45
CLK1-212ENST00000482590 MRGPRX2Q96LB1 330 aa12.26□□□□□ -0.45
CLK1-212ENST00000482590 SMPD1P17405 629 aa12.25□□□□□ -0.45
CLK1-212ENST00000482590 SMCPP49901 116 aaPredicted RBP12.25□□□□□ -0.45
CLK1-212ENST00000482590 SNIP1Q8TAD8 396 aaKnown RBP12.25□□□□□ -0.45
CLK1-212ENST00000482590 SYMPKQ92797 1274 aaKnown RBP12.25□□□□□ -0.45
CLK1-212ENST00000482590 CCDC24Q8N4L8 307 aa12.24□□□□□ -0.45
CLK1-212ENST00000482590 GMPR2Q9P2T1 348 aaKnown RBP12.24□□□□□ -0.45
CLK1-212ENST00000482590 REPIN1Q9BWE0 567 aaKnown RBP12.23□□□□□ -0.45
CLK1-212ENST00000482590 J3QL48 77 aa12.21□□□□□ -0.45
CLK1-212ENST00000482590 JUNDP17535 347 aa12.21□□□□□ -0.45
CLK1-212ENST00000482590 NUTM1Q86Y26 1132 aa12.21□□□□□ -0.45
CLK1-212ENST00000482590 SKOR1P84550 965 aa12.2□□□□□ -0.46
CLK1-212ENST00000482590 KRI1Q8N9T8 703 aaKnown RBP12.2□□□□□ -0.46
CLK1-212ENST00000482590 LCE2AQ5TA79 106 aaPredicted RBP12.19□□□□□ -0.46
CLK1-212ENST00000482590 TREML4Q6UXN2 200 aa12.19□□□□□ -0.46
CLK1-212ENST00000482590 C11orf95C9JLR9 678 aaPredicted RBP12.18□□□□□ -0.46
CLK1-212ENST00000482590 RC3H1Q5TC82 1133 aaKnown RBP12.18□□□□□ -0.46
CLK1-212ENST00000482590 WNT7BP56706 349 aa12.17□□□□□ -0.46
CLK1-212ENST00000482590 RETREG3Q86VR2 466 aa12.17□□□□□ -0.46
CLK1-212ENST00000482590 PCDHGC3Q9UN70 934 aa12.17□□□□□ -0.46
CLK1-212ENST00000482590 SMARCA4P51532 1647 aa12.15□□□□□ -0.46
CLK1-212ENST00000482590 FDX1P10109 184 aa12.15□□□□□ -0.46
CLK1-212ENST00000482590 SSTR3P32745 418 aaPredicted RBP12.15□□□□□ -0.46
CLK1-212ENST00000482590 PTCRAQ6ISU1 281 aaPredicted RBP12.15□□□□□ -0.46
CLK1-212ENST00000482590 HPS1Q92902 700 aa12.15□□□□□ -0.46
CLK1-212ENST00000482590 NUDT12Q9BQG2 462 aa12.14□□□□□ -0.47
CLK1-212ENST00000482590 ATP13A2Q9NQ11 1180 aa12.14□□□□□ -0.47
CLK1-212ENST00000482590 BARGINQ6ZT62 677 aa12.13□□□□□ -0.47
CLK1-212ENST00000482590 SPIRE2Q8WWL2 714 aa12.13□□□□□ -0.47
CLK1-212ENST00000482590 C6orf229H3BNL8 230 aa12.12□□□□□ -0.47
CLK1-212ENST00000482590 SMARCA2P51531 1590 aa12.12□□□□□ -0.47
CLK1-212ENST00000482590 ZMYND10O75800 440 aa12.11□□□□□ -0.47
CLK1-212ENST00000482590 HMGXB3Q12766 1538 aa12.11□□□□□ -0.47
CLK1-212ENST00000482590 NDUFV2P19404 249 aa12.1□□□□□ -0.47
CLK1-212ENST00000482590 NCAPD3P42695 1498 aa12.09□□□□□ -0.47
CLK1-212ENST00000482590 PRKCSHP14314 528 aaPredicted RBP12.09□□□□□ -0.47
CLK1-212ENST00000482590 TTLL12Q14166 644 aaPredicted RBP12.09□□□□□ -0.47
CLK1-212ENST00000482590 MOXD2PA6NHM9 499 aa12.08□□□□□ -0.48
CLK1-212ENST00000482590 ALDH1A1P00352 501 aa12.08□□□□□ -0.48
CLK1-212ENST00000482590 MS4A1P11836 297 aa12.08□□□□□ -0.48
CLK1-212ENST00000482590 SNRPBP14678 240 aaKnown RBP12.08□□□□□ -0.48
CLK1-212ENST00000482590 AMHR2Q16671 573 aa12.08□□□□□ -0.48
CLK1-212ENST00000482590 ATAD2BQ9ULI0 1458 aa12.08□□□□□ -0.48
CLK1-212ENST00000482590 SIAH2O43255 324 aa12.07□□□□□ -0.48
CLK1-212ENST00000482590 ZC3H15Q8WU90 426 aaKnown RBP12.07□□□□□ -0.48
CLK1-212ENST00000482590 BAZ1AQ9NRL2 1556 aaPredicted RBP12.07□□□□□ -0.48
CLK1-212ENST00000482590 WFS1O76024 890 aa12.06□□□□□ -0.48
CLK1-212ENST00000482590 CCNYL3P0C7X3 344 aa12.06□□□□□ -0.48
CLK1-212ENST00000482590 GIGYF2Q6Y7W6 1299 aaKnown RBP12.06□□□□□ -0.48
CLK1-212ENST00000482590 ERCC6Q03468 1493 aa12.06□□□□□ -0.48
CLK1-212ENST00000482590 NFX1Q12986 1120 aaKnown RBP12.05□□□□□ -0.48
CLK1-212ENST00000482590 EHBP1Q8NDI1 1231 aa12.05□□□□□ -0.48
CLK1-212ENST00000482590 TRIM47Q96LD4 638 aa12.05□□□□□ -0.48
CLK1-212ENST00000482590 SH3BP2P78314 561 aa12.04□□□□□ -0.48
CLK1-212ENST00000482590 PTPRNQ16849 979 aa12.04□□□□□ -0.48
CLK1-212ENST00000482590 SENP2Q9HC62 589 aa12.04□□□□□ -0.48
CLK1-212ENST00000482590 CUX2O14529 1486 aa12.03□□□□□ -0.48
CLK1-212ENST00000482590 EVA1BQ9NVM1 165 aa12.03□□□□□ -0.48
CLK1-212ENST00000482590 PRR7Q8TB68 274 aa12.02□□□□□ -0.49
CLK1-212ENST00000482590 BEGAINQ9BUH8 593 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms