RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 MYO5BQ9ULV0 1848 aa6.43□□□□□ -1.38
VPS13D-208ENST00000481484 ANKRD50Q9ULJ7 1429 aa6.43□□□□□ -1.38
VPS13D-208ENST00000481484 SPHKAPQ2M3C7 1700 aa6.43□□□□□ -1.38
VPS13D-208ENST00000481484 GOLGA2Q08379 1002 aa6.43□□□□□ -1.38
VPS13D-208ENST00000481484 ANKLE2Q86XL3 938 aa6.43□□□□□ -1.38
VPS13D-208ENST00000481484 ZNF335Q9H4Z2 1342 aaPredicted RBP6.43□□□□□ -1.38
VPS13D-208ENST00000481484 XIRP1Q702N8 1843 aaKnown RBP6.43□□□□□ -1.38
VPS13D-208ENST00000481484 E9PCH4 1651 aa6.42□□□□□ -1.38
VPS13D-208ENST00000481484 NOS1P29475 1434 aa6.42□□□□□ -1.38
VPS13D-208ENST00000481484 VGFO15240 615 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-208ENST00000481484 ECM2O94769 699 aaPredicted RBP6.42□□□□□ -1.38
VPS13D-208ENST00000481484 PLCG2P16885 1265 aa6.42□□□□□ -1.38
VPS13D-208ENST00000481484 MKRN3Q13064 507 aaKnown RBP6.42□□□□□ -1.38
VPS13D-208ENST00000481484 NCKAP5LQ9HCH0 1330 aa6.42□□□□□ -1.38
VPS13D-208ENST00000481484 TMEM131LA2VDJ0 1609 aa6.41□□□□□ -1.38
VPS13D-208ENST00000481484 LOC105371045A0A1W2PR82 267 aa6.41□□□□□ -1.38
VPS13D-208ENST00000481484 CABP2Q9NPB3 220 aa6.41□□□□□ -1.38
VPS13D-208ENST00000481484 TMEM2Q9UHN6 1383 aa6.41□□□□□ -1.38
VPS13D-208ENST00000481484 LRRC7Q96NW7 1537 aa6.4□□□□□ -1.38
VPS13D-208ENST00000481484 MED1Q15648 1581 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-208ENST00000481484 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-208ENST00000481484 PDCD7Q8N8D1 485 aaKnown RBP6.4□□□□□ -1.38
VPS13D-208ENST00000481484 ZFP91Q96JP5 570 aaPredicted RBP6.4□□□□□ -1.38
VPS13D-208ENST00000481484 SCUBE2Q9NQ36 999 aa6.4□□□□□ -1.38
VPS13D-208ENST00000481484 ALKQ9UM73 1620 aa6.39□□□□□ -1.39
VPS13D-208ENST00000481484 CHD2O14647 1828 aaKnown RBP6.39□□□□□ -1.39
VPS13D-208ENST00000481484 FBXO31Q5XUX0 539 aaPredicted RBP6.39□□□□□ -1.39
VPS13D-208ENST00000481484 TAOK2Q9UL54 1235 aa6.39□□□□□ -1.39
VPS13D-208ENST00000481484 UBAP1LF5GYI3 381 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 TOM1O60784 492 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 SLC52A1Q9NWF4 448 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP6.38□□□□□ -1.39
VPS13D-208ENST00000481484 EID1Q9Y6B2 187 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 DISP3Q9P2K9 1392 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 ZFYVE9O95405 1425 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 KIF1BO60333 1816 aa6.38□□□□□ -1.39
VPS13D-208ENST00000481484 TRPM2O94759 1503 aa6.37□□□□□ -1.39
VPS13D-208ENST00000481484 RGL2O15211 777 aa6.37□□□□□ -1.39
VPS13D-208ENST00000481484 EFCAB3Q8N7B9 438 aa6.37□□□□□ -1.39
VPS13D-208ENST00000481484 RRP7BPQ9NSQ0 103 aa6.37□□□□□ -1.39
VPS13D-208ENST00000481484 RRBP1Q9P2E9 1410 aaKnown RBP6.36□□□□□ -1.39
VPS13D-208ENST00000481484 PLEKHG1Q9ULL1 1385 aa6.36□□□□□ -1.39
VPS13D-208ENST00000481484 XRN1Q8IZH2 1706 aaKnown RBP6.36□□□□□ -1.39
VPS13D-208ENST00000481484 ROBO1Q9Y6N7 1651 aa6.36□□□□□ -1.39
VPS13D-208ENST00000481484 SETBP1Q9Y6X0 1596 aa6.35□□□□□ -1.39
VPS13D-208ENST00000481484 NCOA3Q9Y6Q9 1424 aa6.35□□□□□ -1.39
VPS13D-208ENST00000481484 PIK3R4Q99570 1358 aa6.35□□□□□ -1.39
VPS13D-208ENST00000481484 SOX12O15370 315 aa6.35□□□□□ -1.39
VPS13D-208ENST00000481484 FAM50AQ14320 339 aaKnown RBP6.35□□□□□ -1.39
VPS13D-208ENST00000481484 L3MBTL3Q96JM7 780 aaPredicted RBP6.35□□□□□ -1.39
VPS13D-208ENST00000481484 RIMS2Q9UQ26 1411 aa6.34□□□□□ -1.39
VPS13D-208ENST00000481484 DPY19L2Q6NUT2 758 aa6.34□□□□□ -1.39
VPS13D-208ENST00000481484 DCCP43146 1447 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 SETD1AO15047 1707 aaKnown RBP6.33□□□□□ -1.4
VPS13D-208ENST00000481484 CLTCL1P53675 1640 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 NRXN3Q9Y4C0 1643 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 HDGFP51858 240 aaKnown RBP6.33□□□□□ -1.4
VPS13D-208ENST00000481484 TXNDC2Q86VQ3 553 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 BCL11BQ9C0K0 894 aaPredicted RBP6.33□□□□□ -1.4
VPS13D-208ENST00000481484 CHIC2Q9UKJ5 165 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 PHLPP1O60346 1717 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 HFM1A2PYH4 1435 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 FAM135BQ49AJ0 1406 aa6.33□□□□□ -1.4
VPS13D-208ENST00000481484 MSH6P52701 1360 aa6.32□□□□□ -1.4
VPS13D-208ENST00000481484 AHDC1Q5TGY3 1603 aaPredicted RBP6.32□□□□□ -1.4
VPS13D-208ENST00000481484 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.32□□□□□ -1.4
VPS13D-208ENST00000481484 SHPRHQ149N8 1683 aa6.32□□□□□ -1.4
VPS13D-208ENST00000481484 PRAG1Q86YV5 1406 aa6.32□□□□□ -1.4
VPS13D-208ENST00000481484 TMEM94Q12767 1356 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 PPLO60437 1756 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 NEXMIFQ5QGS0 1516 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 SIPA1L2Q9P2F8 1722 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-208ENST00000481484 STK25O00506 426 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 PPP1R15AO75807 674 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-208ENST00000481484 KCNA6P17658 529 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 LTKP29376 864 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 IDI1Q13907 227 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 STK24Q9Y6E0 443 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 COL16A1Q07092 1604 aaPredicted RBP6.31□□□□□ -1.4
VPS13D-208ENST00000481484 NUP155O75694 1391 aa6.31□□□□□ -1.4
VPS13D-208ENST00000481484 IFT172Q9UG01 1749 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 LAMC1P11047 1609 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 NHSL1Q5SYE7 1610 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 SOCS7O14512 581 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 SLAIN1Q8ND83 568 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 TMEM121BQ9BXQ6 578 aaPredicted RBP6.3□□□□□ -1.4
VPS13D-208ENST00000481484 EIF2AK3Q9NZJ5 1116 aaKnown RBP6.3□□□□□ -1.4
VPS13D-208ENST00000481484 NAIPQ13075 1403 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 ADAMTS13Q76LX8 1427 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 KNDC1Q76NI1 1749 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 NALCNQ8IZF0 1738 aa6.3□□□□□ -1.4
VPS13D-208ENST00000481484 ACIN1Q9UKV3 1341 aaKnown RBP6.29□□□□□ -1.4
VPS13D-208ENST00000481484 HSPA1LP34931 641 aa6.29□□□□□ -1.4
VPS13D-208ENST00000481484 PTCH1Q13635 1447 aa6.29□□□□□ -1.4
VPS13D-208ENST00000481484 MS4A4AQ96JQ5 239 aa6.29□□□□□ -1.4
VPS13D-208ENST00000481484 PHF8Q9UPP1 1060 aa6.29□□□□□ -1.4
VPS13D-208ENST00000481484 BOLA1Q9Y3E2 137 aa6.29□□□□□ -1.4
VPS13D-208ENST00000481484 NLRP6P59044 892 aa6.28□□□□□ -1.4
VPS13D-208ENST00000481484 PIP4K2BP78356 416 aa6.28□□□□□ -1.4
VPS13D-208ENST00000481484 FBXO22Q8NEZ5 403 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms