RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 WIZO95785 1651 aa11.56□□□□□ -0.56
VPS50-215ENST00000480943 HAP1P54257 671 aaPredicted RBP11.56□□□□□ -0.56
VPS50-215ENST00000480943 TMEM134Q9H6X4 195 aa11.56□□□□□ -0.56
VPS50-215ENST00000480943 ARIH1Q9Y4X5 557 aaPredicted RBP11.56□□□□□ -0.56
VPS50-215ENST00000480943 ZBTB24O43167 697 aaPredicted RBP11.55□□□□□ -0.56
VPS50-215ENST00000480943 SMPD1P17405 629 aa11.55□□□□□ -0.56
VPS50-215ENST00000480943 RBM46Q8TBY0 533 aaKnown RBP11.55□□□□□ -0.56
VPS50-215ENST00000480943 FCF1Q9Y324 198 aaKnown RBP11.55□□□□□ -0.56
VPS50-215ENST00000480943 NPDC1Q9NQX5 325 aaPredicted RBP11.54□□□□□ -0.56
VPS50-215ENST00000480943 WNT7AO00755 349 aa11.52□□□□□ -0.57
VPS50-215ENST00000480943 NESP48681 1621 aa11.51□□□□□ -0.57
VPS50-215ENST00000480943 KCNMA1Q12791 1236 aa11.51□□□□□ -0.57
VPS50-215ENST00000480943 ERCC6Q03468 1493 aa11.51□□□□□ -0.57
VPS50-215ENST00000480943 KCTD17Q8N5Z5 321 aa11.5□□□□□ -0.57
VPS50-215ENST00000480943 KCNV2Q8TDN2 545 aa11.5□□□□□ -0.57
VPS50-215ENST00000480943 RSPH4AQ5TD94 716 aa11.49□□□□□ -0.57
VPS50-215ENST00000480943 KIF21AQ7Z4S6 1674 aa11.47□□□□□ -0.57
VPS50-215ENST00000480943 LAMC3Q9Y6N6 1575 aa11.47□□□□□ -0.57
VPS50-215ENST00000480943 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
VPS50-215ENST00000480943 ARHGEF1Q92888 912 aaKnown RBP11.47□□□□□ -0.57
VPS50-215ENST00000480943 H3BM21 787 aa11.46□□□□□ -0.57
VPS50-215ENST00000480943 REPIN1Q9BWE0 567 aaKnown RBP11.46□□□□□ -0.57
VPS50-215ENST00000480943 THOC2Q8NI27 1593 aaKnown RBP11.42□□□□□ -0.58
VPS50-215ENST00000480943 RCCD1A6NED2 376 aa11.42□□□□□ -0.58
VPS50-215ENST00000480943 SLC10A3P09131 477 aa11.42□□□□□ -0.58
VPS50-215ENST00000480943 TMEM151AQ8N4L1 468 aa11.42□□□□□ -0.58
VPS50-215ENST00000480943 CUX2O14529 1486 aa11.42□□□□□ -0.58
VPS50-215ENST00000480943 J3QL48 77 aa11.41□□□□□ -0.58
VPS50-215ENST00000480943 HPS1Q92902 700 aa11.41□□□□□ -0.58
VPS50-215ENST00000480943 PUS10Q3MIT2 529 aaKnown RBP11.4□□□□□ -0.58
VPS50-215ENST00000480943 MRGPRX2Q96LB1 330 aa11.4□□□□□ -0.58
VPS50-215ENST00000480943 RSF1Q96T23 1441 aaPredicted RBP11.39□□□□□ -0.59
VPS50-215ENST00000480943 TOP2AP11388 1531 aaKnown RBP11.39□□□□□ -0.59
VPS50-215ENST00000480943 FMNL1O95466 1100 aaPredicted RBP11.38□□□□□ -0.59
VPS50-215ENST00000480943 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.37□□□□□ -0.59
VPS50-215ENST00000480943 RNF225M0QZC1 329 aaPredicted RBP11.37□□□□□ -0.59
VPS50-215ENST00000480943 KDM2AQ9Y2K7 1162 aa11.37□□□□□ -0.59
VPS50-215ENST00000480943 ADGRG1Q9Y653 693 aa11.37□□□□□ -0.59
VPS50-215ENST00000480943 ERBB4Q15303 1308 aa11.36□□□□□ -0.59
VPS50-215ENST00000480943 VEGFBP49765 207 aa11.36□□□□□ -0.59
VPS50-215ENST00000480943 PRDM2Q13029 1718 aa11.35□□□□□ -0.59
VPS50-215ENST00000480943 GDF11O95390 407 aa11.35□□□□□ -0.59
VPS50-215ENST00000480943 TRIM32Q13049 653 aa11.35□□□□□ -0.59
VPS50-215ENST00000480943 VSIG10Q8N0Z9 540 aa11.34□□□□□ -0.59
VPS50-215ENST00000480943 PDS5BQ9NTI5 1447 aa11.33□□□□□ -0.6
VPS50-215ENST00000480943 CADPSQ9ULU8 1353 aa11.32□□□□□ -0.6
VPS50-215ENST00000480943 MLLT3P42568 568 aaPredicted RBP11.32□□□□□ -0.6
VPS50-215ENST00000480943 THAP11Q96EK4 314 aa11.32□□□□□ -0.6
VPS50-215ENST00000480943 GSK3AP49840 483 aa11.31□□□□□ -0.6
VPS50-215ENST00000480943 FAM160A2Q8N612 972 aaPredicted RBP11.31□□□□□ -0.6
VPS50-215ENST00000480943 SALL2Q9Y467 1007 aaPredicted RBP11.31□□□□□ -0.6
VPS50-215ENST00000480943 RASSF7Q02833 373 aa11.3□□□□□ -0.6
VPS50-215ENST00000480943 MORN1Q5T089 497 aa11.3□□□□□ -0.6
VPS50-215ENST00000480943 MSS51Q4VC12 460 aa11.28□□□□□ -0.6
VPS50-215ENST00000480943 SEMA3EO15041 775 aa11.27□□□□□ -0.61
VPS50-215ENST00000480943 IGHA1P01876 353 aa11.27□□□□□ -0.61
VPS50-215ENST00000480943 PTGDRQ13258 359 aa11.26□□□□□ -0.61
VPS50-215ENST00000480943 MRC2Q9UBG0 1479 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 CEP164Q9UPV0 1460 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 WDR62O43379 1518 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 VSIG8P0DPA2 414 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 ATP6V1AP38606 617 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 PRDM9Q9NQV7 894 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 CFTRP13569 1480 aa11.25□□□□□ -0.61
VPS50-215ENST00000480943 FANCD2Q9BXW9 1451 aa11.24□□□□□ -0.61
VPS50-215ENST00000480943 CAPN5O15484 640 aaPredicted RBP11.23□□□□□ -0.61
VPS50-215ENST00000480943 XP32Q5T750 250 aa11.23□□□□□ -0.61
VPS50-215ENST00000480943 TRIM46Q7Z4K8 759 aa11.23□□□□□ -0.61
VPS50-215ENST00000480943 ALDH1A1P00352 501 aa11.22□□□□□ -0.61
VPS50-215ENST00000480943 BMP1P13497 986 aa11.22□□□□□ -0.61
VPS50-215ENST00000480943 CCDC88BA6NC98 1476 aa11.21□□□□□ -0.61
VPS50-215ENST00000480943 OATP04181 439 aa11.21□□□□□ -0.61
VPS50-215ENST00000480943 FECHP22830 423 aa11.21□□□□□ -0.61
VPS50-215ENST00000480943 WNT7BP56706 349 aa11.21□□□□□ -0.61
VPS50-215ENST00000480943 RC3H1Q5TC82 1133 aaKnown RBP11.21□□□□□ -0.61
VPS50-215ENST00000480943 BRICD5Q6PL45 260 aa11.21□□□□□ -0.61
VPS50-215ENST00000480943 SLC27A5Q9Y2P5 690 aa11.21□□□□□ -0.61
VPS50-215ENST00000480943 TESPA1A2RU30 521 aaPredicted RBP11.19□□□□□ -0.62
VPS50-215ENST00000480943 FUT2Q10981 343 aa11.19□□□□□ -0.62
VPS50-215ENST00000480943 RDH13Q8NBN7 331 aa11.18□□□□□ -0.62
VPS50-215ENST00000480943 FOXK2Q01167 660 aa11.17□□□□□ -0.62
VPS50-215ENST00000480943 FAM161AQ3B820 660 aa11.17□□□□□ -0.62
VPS50-215ENST00000480943 SMYD5Q6GMV2 418 aa11.17□□□□□ -0.62
VPS50-215ENST00000480943 DNMT3AQ9Y6K1 912 aaPredicted RBP11.17□□□□□ -0.62
VPS50-215ENST00000480943 NUTM2FA1L443 756 aa11.16□□□□□ -0.62
VPS50-215ENST00000480943 GPAT2Q6NUI2 795 aa11.16□□□□□ -0.62
VPS50-215ENST00000480943 WASF2Q9Y6W5 498 aa11.16□□□□□ -0.62
VPS50-215ENST00000480943 URB2Q14146 1524 aaKnown RBP11.15□□□□□ -0.62
VPS50-215ENST00000480943 MMP16P51512 607 aa11.15□□□□□ -0.62
VPS50-215ENST00000480943 GRIPAP1Q4V328 841 aa11.15□□□□□ -0.62
VPS50-215ENST00000480943 PXYLP1Q8TE99 480 aa11.15□□□□□ -0.62
VPS50-215ENST00000480943 ZFP42Q96MM3 310 aa11.15□□□□□ -0.62
VPS50-215ENST00000480943 Q3C1V9 767 aa11.12□□□□□ -0.63
VPS50-215ENST00000480943 SCARF1Q14162 830 aa11.11□□□□□ -0.63
VPS50-215ENST00000480943 RBM26Q5T8P6 1007 aaKnown RBP11.11□□□□□ -0.63
VPS50-215ENST00000480943 ADAMTS8Q9UP79 889 aa11.1□□□□□ -0.63
VPS50-215ENST00000480943 FCHSD2O94868 740 aa11.09□□□□□ -0.63
VPS50-215ENST00000480943 KRTAP4-8Q9BYQ9 185 aa11.09□□□□□ -0.63
VPS50-215ENST00000480943 SKOR1P84550 965 aa11.08□□□□□ -0.64
VPS50-215ENST00000480943 DAXXQ9UER7 740 aaPredicted RBP11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms