RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 SMC4Q9NTJ3 1288 aa23.53■■□□□ 1.36
CCDC88B-207ENST00000479965 RSPH4AQ5TD94 716 aa23.53■■□□□ 1.36
CCDC88B-207ENST00000479965 TSR2Q969E8 191 aaKnown RBP23.52■■□□□ 1.36
CCDC88B-207ENST00000479965 SYNJ2O15056 1496 aa23.52■■□□□ 1.36
CCDC88B-207ENST00000479965 ZMYM3Q14202 1370 aa23.51■■□□□ 1.35
CCDC88B-207ENST00000479965 LNPKQ9C0E8 428 aa23.51■■□□□ 1.35
CCDC88B-207ENST00000479965 MYO5CQ9NQX4 1742 aa23.51■■□□□ 1.35
CCDC88B-207ENST00000479965 FAM13BQ9NYF5 915 aa23.51■■□□□ 1.35
CCDC88B-207ENST00000479965 NPC1L1Q9UHC9 1359 aa23.51■■□□□ 1.35
CCDC88B-207ENST00000479965 SCAF11Q99590 1463 aaKnown RBP23.51■■□□□ 1.35
CCDC88B-207ENST00000479965 NCLP19338 710 aaKnown RBP23.5■■□□□ 1.35
CCDC88B-207ENST00000479965 SKOR2Q2VWA4 1001 aaPredicted RBP23.5■■□□□ 1.35
CCDC88B-207ENST00000479965 SYNMO15061 1565 aa23.5■■□□□ 1.35
CCDC88B-207ENST00000479965 DDX49Q9Y6V7 483 aaKnown RBP23.49■■□□□ 1.35
CCDC88B-207ENST00000479965 CCDC173Q0VFZ6 552 aa23.49■■□□□ 1.35
CCDC88B-207ENST00000479965 ZSCAN30Q86W11 494 aa23.48■■□□□ 1.35
CCDC88B-207ENST00000479965 RAB3GAP1Q15042 981 aa23.48■■□□□ 1.35
CCDC88B-207ENST00000479965 WDR63Q8IWG1 891 aa23.48■■□□□ 1.35
CCDC88B-207ENST00000479965 R3HCC1Q9Y3T6 440 aaKnown RBP23.48■■□□□ 1.35
CCDC88B-207ENST00000479965 CFAP70Q5T0N1 1121 aa23.47■■□□□ 1.35
CCDC88B-207ENST00000479965 GOLGA6L22H0YM25 854 aa23.47■■□□□ 1.35
CCDC88B-207ENST00000479965 SSFA2P28290 1259 aa23.46■■□□□ 1.35
CCDC88B-207ENST00000479965 SMC5Q8IY18 1101 aa23.46■■□□□ 1.35
CCDC88B-207ENST00000479965 DDIT3P35638 169 aa23.46■■□□□ 1.35
CCDC88B-207ENST00000479965 CD2BP2O95400 341 aaKnown RBP23.46■■□□□ 1.35
CCDC88B-207ENST00000479965 U2AF1L5P0DN76 240 aaPredicted RBP23.45■■□□□ 1.34
CCDC88B-207ENST00000479965 TRIM27P14373 513 aa23.45■■□□□ 1.34
CCDC88B-207ENST00000479965 U2AF1Q01081 240 aaKnown RBP eCLIP23.45■■□□□ 1.34
CCDC88B-207ENST00000479965 RBM42Q9BTD8 480 aaKnown RBP23.45■■□□□ 1.34
CCDC88B-207ENST00000479965 MTHFSP49914 203 aa23.44■■□□□ 1.34
CCDC88B-207ENST00000479965 ARHGEF5Q12774 1597 aa23.44■■□□□ 1.34
CCDC88B-207ENST00000479965 CIZ1Q9ULV3 898 aaPredicted RBP23.44■■□□□ 1.34
CCDC88B-207ENST00000479965 POLR3AO14802 1390 aaPredicted RBP23.43■■□□□ 1.34
CCDC88B-207ENST00000479965 SNX21Q969T3 373 aa23.43■■□□□ 1.34
CCDC88B-207ENST00000479965 RBM25P49756 843 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-207ENST00000479965 EXOSC9Q06265 439 aaKnown RBP23.43■■□□□ 1.34
CCDC88B-207ENST00000479965 PLXNC1O60486 1568 aa23.43■■□□□ 1.34
CCDC88B-207ENST00000479965 SYCP2Q9BX26 1530 aa23.42■■□□□ 1.34
CCDC88B-207ENST00000479965 DDX19BQ9UMR2 479 aa23.42■■□□□ 1.34
CCDC88B-207ENST00000479965 SAMD9LQ8IVG5 1584 aa23.42■■□□□ 1.34
CCDC88B-207ENST00000479965 OFD1O75665 1012 aa23.42■■□□□ 1.34
CCDC88B-207ENST00000479965 PDZRN4Q6ZMN7 1036 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-207ENST00000479965 HDAC1Q13547 482 aaPredicted RBP23.41■■□□□ 1.34
CCDC88B-207ENST00000479965 SLC12A5Q9H2X9 1139 aa23.4■■□□□ 1.34
CCDC88B-207ENST00000479965 RIPK4P57078 832 aa23.39■■□□□ 1.34
CCDC88B-207ENST00000479965 SSH1Q8WYL5 1049 aa23.39■■□□□ 1.34
CCDC88B-207ENST00000479965 NOB1Q9ULX3 412 aaKnown RBP23.39■■□□□ 1.34
CCDC88B-207ENST00000479965 TMEM57Q8N5G2 664 aa23.39■■□□□ 1.34
CCDC88B-207ENST00000479965 CFAP53Q96M91 514 aa23.39■■□□□ 1.34
CCDC88B-207ENST00000479965 PPP1R9BQ96SB3 815 aa23.39■■□□□ 1.33
CCDC88B-207ENST00000479965 NCOA3Q9Y6Q9 1424 aa23.39■■□□□ 1.33
CCDC88B-207ENST00000479965 RNF17Q9BXT8 1623 aaKnown RBP23.39■■□□□ 1.33
CCDC88B-207ENST00000479965 K7ELQ4 463 aaPredicted RBP23.38■■□□□ 1.33
CCDC88B-207ENST00000479965 PTMSP20962 102 aa23.38■■□□□ 1.33
CCDC88B-207ENST00000479965 XPCQ01831 940 aaPredicted RBP23.38■■□□□ 1.33
CCDC88B-207ENST00000479965 CAVIN1Q6NZI2 390 aaKnown RBP23.38■■□□□ 1.33
CCDC88B-207ENST00000479965 ATF7IPQ6VMQ6 1270 aa23.37■■□□□ 1.33
CCDC88B-207ENST00000479965 GAS2L2Q8NHY3 880 aa23.37■■□□□ 1.33
CCDC88B-207ENST00000479965 MCTP1Q6DN14 999 aa23.37■■□□□ 1.33
CCDC88B-207ENST00000479965 IFT140Q96RY7 1462 aa23.37■■□□□ 1.33
CCDC88B-207ENST00000479965 MRC2Q9UBG0 1479 aa23.37■■□□□ 1.33
CCDC88B-207ENST00000479965 NSD3Q9BZ95 1437 aa23.36■■□□□ 1.33
CCDC88B-207ENST00000479965 ARHGAP5Q13017 1502 aa23.36■■□□□ 1.33
CCDC88B-207ENST00000479965 ZBTB7CA1YPR0 619 aa23.36■■□□□ 1.33
CCDC88B-207ENST00000479965 PHF23Q9BUL5 403 aaPredicted RBP23.36■■□□□ 1.33
CCDC88B-207ENST00000479965 ANKRD45Q5TZF3 282 aa23.36■■□□□ 1.33
CCDC88B-207ENST00000479965 ABCA8O94911 1581 aa23.36■■□□□ 1.33
CCDC88B-207ENST00000479965 U2SURPO15042 1029 aaKnown RBP23.35■■□□□ 1.33
CCDC88B-207ENST00000479965 BAG4O95429 457 aaKnown RBP23.34■■□□□ 1.33
CCDC88B-207ENST00000479965 CHD1LQ86WJ1 897 aa23.34■■□□□ 1.33
CCDC88B-207ENST00000479965 UNC13BO14795 1591 aa23.34■■□□□ 1.33
CCDC88B-207ENST00000479965 KIF2CQ99661 725 aa23.34■■□□□ 1.33
CCDC88B-207ENST00000479965 MYOM1P52179 1685 aa23.34■■□□□ 1.33
CCDC88B-207ENST00000479965 MADDQ8WXG6 1647 aa23.33■■□□□ 1.33
CCDC88B-207ENST00000479965 CALD1Q05682 793 aaKnown RBP23.33■■□□□ 1.33
CCDC88B-207ENST00000479965 KLHL40Q2TBA0 621 aa23.33■■□□□ 1.33
CCDC88B-207ENST00000479965 SCAPERQ9BY12 1400 aa23.33■■□□□ 1.33
CCDC88B-207ENST00000479965 IQGAP1P46940 1657 aa23.33■■□□□ 1.33
CCDC88B-207ENST00000479965 NUCB1Q02818 461 aa23.33■■□□□ 1.32
CCDC88B-207ENST00000479965 UQCRHLA0A096LP55 91 aa23.32■■□□□ 1.32
CCDC88B-207ENST00000479965 UQCRHP07919 91 aa23.32■■□□□ 1.32
CCDC88B-207ENST00000479965 ATP10AO60312 1499 aa23.32■■□□□ 1.32
CCDC88B-207ENST00000479965 TRAK1Q9UPV9 953 aa23.31■■□□□ 1.32
CCDC88B-207ENST00000479965 ERVK-7P63135 1459 aa23.31■■□□□ 1.32
CCDC88B-207ENST00000479965 CCDC27Q2M243 656 aa23.31■■□□□ 1.32
CCDC88B-207ENST00000479965 IQGAP3Q86VI3 1631 aa23.31■■□□□ 1.32
CCDC88B-207ENST00000479965 C1orf115Q9H7X2 142 aa23.31■■□□□ 1.32
CCDC88B-207ENST00000479965 KDM5AP29375 1690 aaKnown RBP23.3■■□□□ 1.32
CCDC88B-207ENST00000479965 ADGRF5Q8IZF2 1346 aa23.3■■□□□ 1.32
CCDC88B-207ENST00000479965 ZBTB40Q9NUA8 1239 aa23.3■■□□□ 1.32
CCDC88B-207ENST00000479965 TBC1D9Q6ZT07 1266 aa23.29■■□□□ 1.32
CCDC88B-207ENST00000479965 SLC24A1O60721 1099 aa23.28■■□□□ 1.32
CCDC88B-207ENST00000479965 PODXL2Q9NZ53 605 aa23.28■■□□□ 1.32
CCDC88B-207ENST00000479965 CHGAP10645 457 aaKnown RBP23.28■■□□□ 1.32
CCDC88B-207ENST00000479965 RBSNQ9H1K0 784 aa23.28■■□□□ 1.32
CCDC88B-207ENST00000479965 ZSCAN23Q3MJ62 389 aa23.27■■□□□ 1.32
CCDC88B-207ENST00000479965 BMP2KLQ5H9B9 411 aa23.27■■□□□ 1.32
CCDC88B-207ENST00000479965 CDC42BPBQ9Y5S2 1711 aa23.26■■□□□ 1.31
CCDC88B-207ENST00000479965 PRDM10Q9NQV6 1147 aa23.26■■□□□ 1.31
CCDC88B-207ENST00000479965 MAST1Q9Y2H9 1570 aa23.26■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms