RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 DXOO77932 396 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-212ENST00000474059 GMPR2Q9P2T1 348 aaKnown RBP10.26□□□□□ -0.77
CCDC88A-212ENST00000474059 SMPD1P17405 629 aa10.25□□□□□ -0.77
CCDC88A-212ENST00000474059 SMCPP49901 116 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-212ENST00000474059 HAP1P54257 671 aaPredicted RBP10.25□□□□□ -0.77
CCDC88A-212ENST00000474059 TRIM32Q13049 653 aa10.25□□□□□ -0.77
CCDC88A-212ENST00000474059 CYP4X1Q8N118 509 aa10.25□□□□□ -0.77
CCDC88A-212ENST00000474059 WNT7AO00755 349 aa10.24□□□□□ -0.77
CCDC88A-212ENST00000474059 MDM2Q00987 491 aaPredicted RBP10.24□□□□□ -0.77
CCDC88A-212ENST00000474059 KDM4AO75164 1064 aa10.23□□□□□ -0.77
CCDC88A-212ENST00000474059 GUCA2AQ02747 115 aa10.23□□□□□ -0.77
CCDC88A-212ENST00000474059 TREML4Q6UXN2 200 aa10.23□□□□□ -0.77
CCDC88A-212ENST00000474059 HOXA2O43364 376 aa10.22□□□□□ -0.77
CCDC88A-212ENST00000474059 SKOR1P84550 965 aa10.22□□□□□ -0.77
CCDC88A-212ENST00000474059 AXIN1O15169 862 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 CTC1Q2NKJ3 1217 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 Q3C1V9 767 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 GRIPAP1Q4V328 841 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 LCE2CQ5TA81 110 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 CCDC102AQ96A19 550 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 MRGPRX2Q96LB1 330 aa10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 USB1Q9BQ65 265 aaKnown RBP10.21□□□□□ -0.77
CCDC88A-212ENST00000474059 J3QL48 77 aa10.2□□□□□ -0.78
CCDC88A-212ENST00000474059 MINK1Q8N4C8 1332 aaPredicted RBP10.19□□□□□ -0.78
CCDC88A-212ENST00000474059 SNIP1Q8TAD8 396 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-212ENST00000474059 SYMPKQ92797 1274 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-212ENST00000474059 REPIN1Q9BWE0 567 aaKnown RBP10.18□□□□□ -0.78
CCDC88A-212ENST00000474059 TTC24A2A3L6 582 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-212ENST00000474059 ZBTB24O43167 697 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-212ENST00000474059 USP46P62068 366 aa10.17□□□□□ -0.78
CCDC88A-212ENST00000474059 FAM217BQ9NTX9 383 aaPredicted RBP10.17□□□□□ -0.78
CCDC88A-212ENST00000474059 NFX1Q12986 1120 aaKnown RBP10.16□□□□□ -0.78
CCDC88A-212ENST00000474059 HPS1Q92902 700 aa10.15□□□□□ -0.78
CCDC88A-212ENST00000474059 ATP13A2Q9NQ11 1180 aa10.14□□□□□ -0.79
CCDC88A-212ENST00000474059 C11orf95C9JLR9 678 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-212ENST00000474059 SNRPBP14678 240 aaKnown RBP10.13□□□□□ -0.79
CCDC88A-212ENST00000474059 JUNDP17535 347 aa10.13□□□□□ -0.79
CCDC88A-212ENST00000474059 PTCRAQ6ISU1 281 aaPredicted RBP10.13□□□□□ -0.79
CCDC88A-212ENST00000474059 GPCPD1Q9NPB8 672 aa10.13□□□□□ -0.79
CCDC88A-212ENST00000474059 PCDHGC3Q9UN70 934 aa10.13□□□□□ -0.79
CCDC88A-212ENST00000474059 RC3H1Q5TC82 1133 aaKnown RBP10.12□□□□□ -0.79
CCDC88A-212ENST00000474059 CCDC24Q8N4L8 307 aa10.1□□□□□ -0.79
CCDC88A-212ENST00000474059 WNT7BP56706 349 aa10.09□□□□□ -0.79
CCDC88A-212ENST00000474059 SIAH2O43255 324 aa10.08□□□□□ -0.8
CCDC88A-212ENST00000474059 WFS1O76024 890 aa10.08□□□□□ -0.8
CCDC88A-212ENST00000474059 CLCN1P35523 988 aa10.08□□□□□ -0.8
CCDC88A-212ENST00000474059 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.08□□□□□ -0.8
CCDC88A-212ENST00000474059 RETREG3Q86VR2 466 aa10.08□□□□□ -0.8
CCDC88A-212ENST00000474059 TRIM47Q96LD4 638 aa10.08□□□□□ -0.8
CCDC88A-212ENST00000474059 VSIG10Q8N0Z9 540 aa10.07□□□□□ -0.8
CCDC88A-212ENST00000474059 WIPF1O43516 503 aa10.05□□□□□ -0.8
CCDC88A-212ENST00000474059 NUDT12Q9BQG2 462 aa10.05□□□□□ -0.8
CCDC88A-212ENST00000474059 FDX1P10109 184 aa10.04□□□□□ -0.8
CCDC88A-212ENST00000474059 SPIRE2Q8WWL2 714 aa10.04□□□□□ -0.8
CCDC88A-212ENST00000474059 NDUFV2P19404 249 aa10.02□□□□□ -0.81
CCDC88A-212ENST00000474059 SH3BP2P78314 561 aa10.02□□□□□ -0.81
CCDC88A-212ENST00000474059 MOXD2PA6NHM9 499 aa10.01□□□□□ -0.81
CCDC88A-212ENST00000474059 SSTR3P32745 418 aaPredicted RBP10.01□□□□□ -0.81
CCDC88A-212ENST00000474059 TRIM46Q7Z4K8 759 aa10.01□□□□□ -0.81
CCDC88A-212ENST00000474059 NUTM1Q86Y26 1132 aa10.01□□□□□ -0.81
CCDC88A-212ENST00000474059 TERTO14746 1132 aaKnown RBP10□□□□□ -0.81
CCDC88A-212ENST00000474059 ALDH1A1P00352 501 aa10□□□□□ -0.81
CCDC88A-212ENST00000474059 TULP1O00294 542 aaPredicted RBP9.99□□□□□ -0.81
CCDC88A-212ENST00000474059 AMHR2Q16671 573 aa9.98□□□□□ -0.81
CCDC88A-212ENST00000474059 BARGINQ6ZT62 677 aa9.98□□□□□ -0.81
CCDC88A-212ENST00000474059 SENP2Q9HC62 589 aa9.98□□□□□ -0.81
CCDC88A-212ENST00000474059 C6orf229H3BNL8 230 aa9.97□□□□□ -0.81
CCDC88A-212ENST00000474059 ZMYND10O75800 440 aa9.97□□□□□ -0.81
CCDC88A-212ENST00000474059 CCNYL3P0C7X3 344 aa9.97□□□□□ -0.81
CCDC88A-212ENST00000474059 MS4A1P11836 297 aa9.97□□□□□ -0.81
CCDC88A-212ENST00000474059 BMP1P13497 986 aa9.97□□□□□ -0.81
CCDC88A-212ENST00000474059 PTPRNQ16849 979 aa9.96□□□□□ -0.82
CCDC88A-212ENST00000474059 EHBP1Q8NDI1 1231 aa9.96□□□□□ -0.82
CCDC88A-212ENST00000474059 UNC93B1Q9H1C4 597 aa9.96□□□□□ -0.82
CCDC88A-212ENST00000474059 EVA1BQ9NVM1 165 aa9.96□□□□□ -0.82
CCDC88A-212ENST00000474059 TLL2Q9Y6L7 1015 aa9.95□□□□□ -0.82
CCDC88A-212ENST00000474059 LORP23490 312 aaPredicted RBP9.94□□□□□ -0.82
CCDC88A-212ENST00000474059 GIGYF2Q6Y7W6 1299 aaKnown RBP9.94□□□□□ -0.82
CCDC88A-212ENST00000474059 KIFC2Q96AC6 838 aa9.94□□□□□ -0.82
CCDC88A-212ENST00000474059 LINC01559Q495D7 138 aa9.93□□□□□ -0.82
CCDC88A-212ENST00000474059 PRR7Q8TB68 274 aa9.93□□□□□ -0.82
CCDC88A-212ENST00000474059 BAP1Q92560 729 aa9.93□□□□□ -0.82
CCDC88A-212ENST00000474059 KCNH2Q12809 1159 aa9.92□□□□□ -0.82
CCDC88A-212ENST00000474059 ZC3H15Q8WU90 426 aaKnown RBP9.92□□□□□ -0.82
CCDC88A-212ENST00000474059 STK17AQ9UEE5 414 aa9.91□□□□□ -0.82
CCDC88A-212ENST00000474059 PCDHB15Q9Y5E8 787 aa9.91□□□□□ -0.82
CCDC88A-212ENST00000474059 CAPN5O15484 640 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-212ENST00000474059 TTLL12Q14166 644 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-212ENST00000474059 DESI1Q6ICB0 168 aa9.9□□□□□ -0.82
CCDC88A-212ENST00000474059 KRI1Q8N9T8 703 aaKnown RBP9.9□□□□□ -0.82
CCDC88A-212ENST00000474059 ZNF511Q8NB15 262 aa9.9□□□□□ -0.82
CCDC88A-212ENST00000474059 CFAP99D6REC4 459 aa9.89□□□□□ -0.83
CCDC88A-212ENST00000474059 MTMR2Q13614 643 aa9.89□□□□□ -0.83
CCDC88A-212ENST00000474059 RSBN1LQ6PCB5 846 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-212ENST00000474059 PARP9Q8IXQ6 854 aa9.89□□□□□ -0.83
CCDC88A-212ENST00000474059 BEGAINQ9BUH8 593 aa9.89□□□□□ -0.83
CCDC88A-212ENST00000474059 KLF16Q9BXK1 252 aaPredicted RBP9.88□□□□□ -0.83
CCDC88A-212ENST00000474059 TBC1D2Q9BYX2 928 aa9.88□□□□□ -0.83
CCDC88A-212ENST00000474059 WASF2Q9Y6W5 498 aa9.88□□□□□ -0.83
CCDC88A-212ENST00000474059 INSM1Q01101 510 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms