RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 R3HCC1Q9Y3T6 440 aaKnown RBP15.92■□□□□ 0.14
COL6A3-209ENST00000472056 TRIM5Q9C035 493 aa15.92■□□□□ 0.14
COL6A3-209ENST00000472056 CALCOCO1Q9P1Z2 691 aa15.92■□□□□ 0.14
COL6A3-209ENST00000472056 TXLNAP40222 546 aa15.91■□□□□ 0.14
COL6A3-209ENST00000472056 CBFA2T2O43439 604 aa15.91■□□□□ 0.14
COL6A3-209ENST00000472056 OFD1O75665 1012 aa15.91■□□□□ 0.14
COL6A3-209ENST00000472056 EZRP15311 586 aaKnown RBP15.91■□□□□ 0.14
COL6A3-209ENST00000472056 MAP9Q49MG5 647 aa15.91■□□□□ 0.14
COL6A3-209ENST00000472056 CCDC112Q8NEF3 446 aa15.9■□□□□ 0.14
COL6A3-209ENST00000472056 SOGA1O94964 1423 aa15.9■□□□□ 0.14
COL6A3-209ENST00000472056 DHX57Q6P158 1386 aaKnown RBP15.9■□□□□ 0.14
COL6A3-209ENST00000472056 AEBP1Q8IUX7 1158 aa15.9■□□□□ 0.14
COL6A3-209ENST00000472056 POLR3GO15318 223 aaPredicted RBP15.9■□□□□ 0.14
COL6A3-209ENST00000472056 NAP1L1P55209 391 aaKnown RBP15.9■□□□□ 0.14
COL6A3-209ENST00000472056 SDF4Q9BRK5 362 aa15.9■□□□□ 0.14
COL6A3-209ENST00000472056 ANO2Q9NQ90 1003 aa15.9■□□□□ 0.14
COL6A3-209ENST00000472056 IFIT2P09913 472 aaKnown RBP15.89■□□□□ 0.13
COL6A3-209ENST00000472056 SENP3-EIF4A1A0A087X0R7 540 aa15.89■□□□□ 0.13
COL6A3-209ENST00000472056 FOXD4L1Q9NU39 408 aa15.89■□□□□ 0.13
COL6A3-209ENST00000472056 CLUAP1Q96AJ1 413 aa15.89■□□□□ 0.13
COL6A3-209ENST00000472056 CRBNQ96SW2 442 aa15.89■□□□□ 0.13
COL6A3-209ENST00000472056 EFCAB2Q5VUJ9 269 aa15.89■□□□□ 0.13
COL6A3-209ENST00000472056 AXDND1Q5T1B0 1012 aaPredicted RBP15.89■□□□□ 0.13
COL6A3-209ENST00000472056 L3MBTL2Q969R5 705 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 VPS53Q5VIR6 699 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 GOLGA6L10A0A0M3HER8 536 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 C9orf78Q9NZ63 289 aaPredicted RBP15.88■□□□□ 0.13
COL6A3-209ENST00000472056 NOL8Q76FK4 1167 aaKnown RBP15.88■□□□□ 0.13
COL6A3-209ENST00000472056 PLEKHG5O94827 1062 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 MCM5P33992 734 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 PODXL2Q9NZ53 605 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 TOMM22Q9NS69 142 aa15.88■□□□□ 0.13
COL6A3-209ENST00000472056 STIM1Q13586 685 aa15.87■□□□□ 0.13
COL6A3-209ENST00000472056 CCDC88BA6NC98 1476 aa15.87■□□□□ 0.13
COL6A3-209ENST00000472056 RALYLQ86SE5 291 aaKnown RBP15.87■□□□□ 0.13
COL6A3-209ENST00000472056 SART3Q15020 963 aaKnown RBP15.86■□□□□ 0.13
COL6A3-209ENST00000472056 FRAT2O75474 233 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-209ENST00000472056 CNTROBQ8N137 903 aa15.86■□□□□ 0.13
COL6A3-209ENST00000472056 RUNDC1Q96C34 613 aa15.86■□□□□ 0.13
COL6A3-209ENST00000472056 MAGEC2Q9UBF1 373 aaPredicted RBP15.86■□□□□ 0.13
COL6A3-209ENST00000472056 PDS5BQ9NTI5 1447 aa15.86■□□□□ 0.13
COL6A3-209ENST00000472056 WDR33Q9C0J8 1336 aaKnown RBP15.86■□□□□ 0.13
COL6A3-209ENST00000472056 CCDC43Q96MW1 224 aaKnown RBP15.86■□□□□ 0.13
COL6A3-209ENST00000472056 HSP90AB2PQ58FF8 381 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 PDCL3Q9H2J4 239 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 PLEKHH1Q9ULM0 1364 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 VPS37CA5D8V6 355 aaPredicted RBP15.85■□□□□ 0.13
COL6A3-209ENST00000472056 PDE3AQ14432 1141 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 AMPHP49418 695 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 G3V3G9 751 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 DCAF8Q5TAQ9 597 aa15.85■□□□□ 0.13
COL6A3-209ENST00000472056 SLC26A8Q96RN1 970 aa15.84■□□□□ 0.13
COL6A3-209ENST00000472056 GNAI1P63096 354 aa15.84■□□□□ 0.13
COL6A3-209ENST00000472056 HSP90AB3PQ58FF7 597 aa15.84■□□□□ 0.13
COL6A3-209ENST00000472056 RRBP1Q9P2E9 1410 aaKnown RBP15.84■□□□□ 0.13
COL6A3-209ENST00000472056 SMARCA4P51532 1647 aa15.84■□□□□ 0.13
COL6A3-209ENST00000472056 SEPT7Q16181 437 aaKnown RBP15.83■□□□□ 0.13
COL6A3-209ENST00000472056 CFAP45Q9UL16 551 aa15.83■□□□□ 0.13
COL6A3-209ENST00000472056 POLA1P09884 1462 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-209ENST00000472056 FOXD4L5Q5VV16 416 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-209ENST00000472056 MICALCLQ6ZW33 695 aa15.83■□□□□ 0.12
COL6A3-209ENST00000472056 FOXD4L4Q8WXT5 416 aaPredicted RBP15.83■□□□□ 0.12
COL6A3-209ENST00000472056 C1orf141Q5JVX7 400 aa15.83■□□□□ 0.12
COL6A3-209ENST00000472056 ESPNB1AK53 854 aa15.83■□□□□ 0.12
COL6A3-209ENST00000472056 CAVIN2O95810 425 aa15.83■□□□□ 0.12
COL6A3-209ENST00000472056 G3BP1Q13283 466 aaKnown RBP eCLIP15.83■□□□□ 0.12
COL6A3-209ENST00000472056 LUZP1Q86V48 1076 aa15.82■□□□□ 0.12
COL6A3-209ENST00000472056 GCC1Q96CN9 775 aa15.82■□□□□ 0.12
COL6A3-209ENST00000472056 EID1Q9Y6B2 187 aa15.82■□□□□ 0.12
COL6A3-209ENST00000472056 LRRCC1Q9C099 1032 aa15.82■□□□□ 0.12
COL6A3-209ENST00000472056 ZSCAN30Q86W11 494 aa15.82■□□□□ 0.12
COL6A3-209ENST00000472056 MYOM3Q5VTT5 1437 aa15.82■□□□□ 0.12
COL6A3-209ENST00000472056 EXOC6Q8TAG9 804 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 GBP2P32456 591 aaPredicted RBP15.81■□□□□ 0.12
COL6A3-209ENST00000472056 ERC1Q8IUD2 1116 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 GRPEL1Q9HAV7 217 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 GIMAP7Q8NHV1 300 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 COG3Q96JB2 828 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 TRIM34Q9BYJ4 488 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 SRCIN1Q9C0H9 1055 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 ERICH3Q5RHP9 1530 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 FEZ1Q99689 392 aa15.81■□□□□ 0.12
COL6A3-209ENST00000472056 TUBB4BP68371 445 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 POTEB2H3BUK9 544 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 NEMFO60524 1076 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 PPFIBP1Q86W92 1011 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 UQCRHLA0A096LP55 91 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 UQCRHP07919 91 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 ZNF428Q96B54 188 aa15.8■□□□□ 0.12
COL6A3-209ENST00000472056 CSB-PGBD3P0DP91 1061 aa15.79■□□□□ 0.12
COL6A3-209ENST00000472056 NFXL1Q6ZNB6 911 aa15.79■□□□□ 0.12
COL6A3-209ENST00000472056 PANK3Q9H999 370 aa15.79■□□□□ 0.12
COL6A3-209ENST00000472056 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.79■□□□□ 0.127e-8■■■■■ 186.3
COL6A3-209ENST00000472056 MEX3CQ5U5Q3 659 aaKnown RBP15.79■□□□□ 0.12
COL6A3-209ENST00000472056 SHTN1A0MZ66 631 aa15.79■□□□□ 0.12
COL6A3-209ENST00000472056 CCDC146Q8IYE0 955 aa15.79■□□□□ 0.12
COL6A3-209ENST00000472056 SYCP1Q15431 976 aa15.79■□□□□ 0.12
COL6A3-209ENST00000472056 VGFO15240 615 aaPredicted RBP15.79■□□□□ 0.12
COL6A3-209ENST00000472056 CGNQ9P2M7 1197 aaKnown RBP15.78■□□□□ 0.12
COL6A3-209ENST00000472056 KRT85P78386 507 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms