RNA–Protein interactions for RNA: ENST00000471218.5

PTPRE-207, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3 BASIC

Gene PTPRE, Length 522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-207ENST00000471218 ADGRL3Q9HAR2 1447 aa12.89□□□□□ -0.35
PTPRE-207ENST00000471218 LAMC1P11047 1609 aa12.89□□□□□ -0.35
PTPRE-207ENST00000471218 C8orf37Q96NL8 207 aa12.89□□□□□ -0.35
PTPRE-207ENST00000471218 EIF4G2P78344 907 aaKnown RBP eCLIP12.88□□□□□ -0.35
PTPRE-207ENST00000471218 METP08581 1390 aa12.88□□□□□ -0.35
PTPRE-207ENST00000471218 NBPF8Q3BBV2 869 aa12.86□□□□□ -0.35
PTPRE-207ENST00000471218 CCDC125Q86Z20 511 aa12.86□□□□□ -0.35
PTPRE-207ENST00000471218 TRPC5Q9UL62 973 aaPredicted RBP12.86□□□□□ -0.35
PTPRE-207ENST00000471218 NRXN1Q9ULB1 1477 aa12.85□□□□□ -0.35
PTPRE-207ENST00000471218 XRN1Q8IZH2 1706 aaKnown RBP12.85□□□□□ -0.35
PTPRE-207ENST00000471218 PNPLA6Q8IY17 1366 aa12.85□□□□□ -0.35
PTPRE-207ENST00000471218 DIEXFQ68CQ4 756 aaKnown RBP12.85□□□□□ -0.35
PTPRE-207ENST00000471218 DCAF11Q8TEB1 546 aa12.85□□□□□ -0.35
PTPRE-207ENST00000471218 SOS2Q07890 1332 aaPredicted RBP12.85□□□□□ -0.35
PTPRE-207ENST00000471218 ATAD2Q6PL18 1390 aa12.84□□□□□ -0.35
PTPRE-207ENST00000471218 USP21Q9UK80 565 aa12.84□□□□□ -0.35
PTPRE-207ENST00000471218 PTCH1Q13635 1447 aa12.84□□□□□ -0.35
PTPRE-207ENST00000471218 SETD1AO15047 1707 aaKnown RBP12.84□□□□□ -0.35
PTPRE-207ENST00000471218 KIAA1210Q9ULL0 1709 aa12.84□□□□□ -0.35
PTPRE-207ENST00000471218 C1orf167Q5SNV9 1468 aa12.84□□□□□ -0.35
PTPRE-207ENST00000471218 NHSL1Q5SYE7 1610 aa12.84□□□□□ -0.35
PTPRE-207ENST00000471218 KIF1BO60333 1816 aa12.83□□□□□ -0.35
PTPRE-207ENST00000471218 LRPPRCP42704 1394 aaKnown RBP12.83□□□□□ -0.36
PTPRE-207ENST00000471218 ADAMTS2O95450 1211 aa12.83□□□□□ -0.36
PTPRE-207ENST00000471218 FNBP4Q8N3X1 1017 aaPredicted RBP12.83□□□□□ -0.36
PTPRE-207ENST00000471218 NPHP3Q7Z494 1330 aa12.83□□□□□ -0.36
PTPRE-207ENST00000471218 TRPM1Q7Z4N2 1603 aa12.82□□□□□ -0.36
PTPRE-207ENST00000471218 SLC24A1O60721 1099 aa12.82□□□□□ -0.36
PTPRE-207ENST00000471218 NRXN3Q9Y4C0 1643 aa12.81□□□□□ -0.36
PTPRE-207ENST00000471218 ROCK2O75116 1388 aaKnown RBP12.81□□□□□ -0.36
PTPRE-207ENST00000471218 USP47Q96K76 1375 aa12.81□□□□□ -0.36
PTPRE-207ENST00000471218 ZRANB1Q9UGI0 708 aa12.8□□□□□ -0.36
PTPRE-207ENST00000471218 IFT172Q9UG01 1749 aa12.79□□□□□ -0.36
PTPRE-207ENST00000471218 NEXMIFQ5QGS0 1516 aa12.79□□□□□ -0.36
PTPRE-207ENST00000471218 DDX17Q92841 729 aaKnown RBP12.79□□□□□ -0.36
PTPRE-207ENST00000471218 ORAI2Q96SN7 254 aa12.79□□□□□ -0.36
PTPRE-207ENST00000471218 HSPA5P11021 654 aaKnown RBP12.78□□□□□ -0.36
PTPRE-207ENST00000471218 RGL3Q3MIN7 710 aa12.78□□□□□ -0.36
PTPRE-207ENST00000471218 ESCO1Q5FWF5 840 aa12.78□□□□□ -0.36
PTPRE-207ENST00000471218 CARD11Q9BXL7 1154 aa12.78□□□□□ -0.36
PTPRE-207ENST00000471218 RGS12O14924 1447 aa12.78□□□□□ -0.36
PTPRE-207ENST00000471218 SRCAPQ6ZRS2 3230 aa12.77□□□□□ -0.37
PTPRE-207ENST00000471218 EIF3AQ14152 1382 aaKnown RBP12.77□□□□□ -0.37
PTPRE-207ENST00000471218 ROBO2Q9HCK4 1378 aa12.77□□□□□ -0.37
PTPRE-207ENST00000471218 PIK3C2GO75747 1445 aa12.77□□□□□ -0.37
PTPRE-207ENST00000471218 KDM2AQ9Y2K7 1162 aa12.75□□□□□ -0.37
PTPRE-207ENST00000471218 PPLO60437 1756 aa12.74□□□□□ -0.37
PTPRE-207ENST00000471218 GJD4Q96KN9 370 aaPredicted RBP12.74□□□□□ -0.37
PTPRE-207ENST00000471218 NALCNQ8IZF0 1738 aa12.74□□□□□ -0.37
PTPRE-207ENST00000471218 SBNO2Q9Y2G9 1366 aa12.73□□□□□ -0.37
PTPRE-207ENST00000471218 FOXO3O43524 673 aa12.73□□□□□ -0.37
PTPRE-207ENST00000471218 PSME1Q06323 249 aa12.73□□□□□ -0.37
PTPRE-207ENST00000471218 SIRT1Q96EB6 747 aa12.73□□□□□ -0.37
PTPRE-207ENST00000471218 ATRNO75882 1429 aa12.72□□□□□ -0.37
PTPRE-207ENST00000471218 CCDC7Q96M83 1385 aa12.72□□□□□ -0.37
PTPRE-207ENST00000471218 ABCC11Q96J66 1382 aa12.71□□□□□ -0.37
PTPRE-207ENST00000471218 SF3B2Q13435 895 aaKnown RBP12.71□□□□□ -0.37
PTPRE-207ENST00000471218 UNC5CLQ8IV45 518 aa12.71□□□□□ -0.37
PTPRE-207ENST00000471218 C14orf93Q9H972 538 aaKnown RBP12.71□□□□□ -0.37
PTPRE-207ENST00000471218 HAP1P54257 671 aaPredicted RBP12.7□□□□□ -0.38
PTPRE-207ENST00000471218 COL22A1Q8NFW1 1626 aaPredicted RBP12.7□□□□□ -0.38
PTPRE-207ENST00000471218 CDC42BPGQ6DT37 1551 aa12.69□□□□□ -0.38
PTPRE-207ENST00000471218 WASHC2AQ641Q2 1341 aa12.69□□□□□ -0.38
PTPRE-207ENST00000471218 CDCA8Q53HL2 280 aa12.69□□□□□ -0.38
PTPRE-207ENST00000471218 TECPR2O15040 1411 aa12.69□□□□□ -0.38
PTPRE-207ENST00000471218 ADGRF5Q8IZF2 1346 aa12.68□□□□□ -0.38
PTPRE-207ENST00000471218 BCL9LQ86UU0 1499 aa12.68□□□□□ -0.38
PTPRE-207ENST00000471218 STK26Q9P289 416 aa12.68□□□□□ -0.38
PTPRE-207ENST00000471218 ADGRB1O14514 1584 aa12.68□□□□□ -0.38
PTPRE-207ENST00000471218 SPATA31A3Q5VYP0 1347 aa12.67□□□□□ -0.38
PTPRE-207ENST00000471218 NBPF1Q3BBV0 1214 aa12.67□□□□□ -0.38
PTPRE-207ENST00000471218 KRT28Q7Z3Y7 464 aa12.67□□□□□ -0.38
PTPRE-207ENST00000471218 EP400Q96L91 3159 aa12.67□□□□□ -0.38
PTPRE-207ENST00000471218 PXDNQ92626 1479 aa12.66□□□□□ -0.38
PTPRE-207ENST00000471218 KIF7Q2M1P5 1343 aa12.66□□□□□ -0.38
PTPRE-207ENST00000471218 ST20-MTHFSA0A0A6YYL1 179 aa12.66□□□□□ -0.38
PTPRE-207ENST00000471218 WAPLQ7Z5K2 1190 aa12.66□□□□□ -0.38
PTPRE-207ENST00000471218 BLMP54132 1417 aaPredicted RBP12.65□□□□□ -0.38
PTPRE-207ENST00000471218 TMF1P82094 1093 aa12.64□□□□□ -0.39
PTPRE-207ENST00000471218 XPCQ01831 940 aaPredicted RBP12.64□□□□□ -0.39
PTPRE-207ENST00000471218 VPS72Q15906 364 aa12.64□□□□□ -0.39
PTPRE-207ENST00000471218 PUS7Q96PZ0 661 aaKnown RBP12.64□□□□□ -0.39
PTPRE-207ENST00000471218 TESK2Q96S53 571 aa12.64□□□□□ -0.39
PTPRE-207ENST00000471218 PHF8Q9UPP1 1060 aa12.64□□□□□ -0.39
PTPRE-207ENST00000471218 ARHGEF10O15013 1369 aa12.64□□□□□ -0.39
PTPRE-207ENST00000471218 NUTM2FA1L443 756 aa12.63□□□□□ -0.39
PTPRE-207ENST00000471218 ONECUT3O60422 494 aaPredicted RBP12.63□□□□□ -0.39
PTPRE-207ENST00000471218 DDX10Q13206 875 aaKnown RBP12.63□□□□□ -0.39
PTPRE-207ENST00000471218 KTN1Q86UP2 1357 aaKnown RBP12.63□□□□□ -0.39
PTPRE-207ENST00000471218 SLIT2O94813 1529 aa12.62□□□□□ -0.39
PTPRE-207ENST00000471218 SBNO1A3KN83 1393 aa12.62□□□□□ -0.39
PTPRE-207ENST00000471218 CFAP70Q5T0N1 1121 aa12.62□□□□□ -0.39
PTPRE-207ENST00000471218 TMEM132EQ6IEE7 984 aa12.62□□□□□ -0.39
PTPRE-207ENST00000471218 CCDC9Q9Y3X0 531 aaKnown RBP12.62□□□□□ -0.39
PTPRE-207ENST00000471218 DLC1Q96QB1 1528 aa12.62□□□□□ -0.39
PTPRE-207ENST00000471218 YTHDC2Q9H6S0 1430 aaKnown RBP12.62□□□□□ -0.39
PTPRE-207ENST00000471218 KIF1AQ12756 1690 aa12.61□□□□□ -0.39
PTPRE-207ENST00000471218 CCER2I3L3R5 266 aa12.61□□□□□ -0.39
PTPRE-207ENST00000471218 SEPT12Q8IYM1 358 aa12.61□□□□□ -0.39
PTPRE-207ENST00000471218 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms