RNA–Protein interactions for RNA: ENST00000466963.1

CXXC4-202, Transcript of CXXC finger protein 4, humanhuman

TSL 1 (best)

Gene CXXC4, Length 3,130 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXXC4-202ENST00000466963 TRIM52Q96A61 297 aa8.81□□□□□ -1
CXXC4-202ENST00000466963 PTPRUQ92729 1446 aa8.81□□□□□ -1
CXXC4-202ENST00000466963 SLIT2O94813 1529 aa8.81□□□□□ -1
CXXC4-202ENST00000466963 ONECUT3O60422 494 aaPredicted RBP8.8□□□□□ -1
CXXC4-202ENST00000466963 PIAS4Q8N2W9 510 aaPredicted RBP8.8□□□□□ -1
CXXC4-202ENST00000466963 USP21Q9UK80 565 aa8.8□□□□□ -1
CXXC4-202ENST00000466963 SBNO1A3KN83 1393 aa8.8□□□□□ -1
CXXC4-202ENST00000466963 RRBP1Q9P2E9 1410 aaKnown RBP8.8□□□□□ -1
CXXC4-202ENST00000466963 ARHGEF10O15013 1369 aa8.79□□□□□ -1
CXXC4-202ENST00000466963 PXDNQ92626 1479 aa8.79□□□□□ -1
CXXC4-202ENST00000466963 RGPD3A6NKT7 1758 aaPredicted RBP8.79□□□□□ -1
CXXC4-202ENST00000466963 RGPD4Q7Z3J3 1758 aa8.79□□□□□ -1
CXXC4-202ENST00000466963 NUTM2BA6NNL0 878 aaPredicted RBP8.78□□□□□ -1
CXXC4-202ENST00000466963 NUTM2EB1AL46 878 aaPredicted RBP8.78□□□□□ -1
CXXC4-202ENST00000466963 NUTM2DQ5VT03 806 aaPredicted RBP8.78□□□□□ -1
CXXC4-202ENST00000466963 NUTM2AQ8IVF1 878 aaPredicted RBP8.78□□□□□ -1
CXXC4-202ENST00000466963 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.78□□□□□ -1
CXXC4-202ENST00000466963 STAC3Q96MF2 364 aa8.78□□□□□ -1
CXXC4-202ENST00000466963 ANKARQ7Z5J8 1434 aa8.78□□□□□ -1
CXXC4-202ENST00000466963 USP32Q8NFA0 1604 aa8.77□□□□□ -1
CXXC4-202ENST00000466963 PSME1Q06323 249 aa8.77□□□□□ -1.01
CXXC4-202ENST00000466963 GJD4Q96KN9 370 aaPredicted RBP8.77□□□□□ -1.01
CXXC4-202ENST00000466963 FMN2Q9NZ56 1722 aa8.77□□□□□ -1.01
CXXC4-202ENST00000466963 ANKRD30BQ9BXX2 1392 aa8.77□□□□□ -1.01
CXXC4-202ENST00000466963 DCAF8L1A6NGE4 600 aa8.76□□□□□ -1.01
CXXC4-202ENST00000466963 VPS72Q15906 364 aa8.76□□□□□ -1.01
CXXC4-202ENST00000466963 BCL9LQ86UU0 1499 aa8.76□□□□□ -1.01
CXXC4-202ENST00000466963 BAG6P46379 1132 aa8.76□□□□□ -1.01
CXXC4-202ENST00000466963 UNC5CLQ8IV45 518 aa8.76□□□□□ -1.01
CXXC4-202ENST00000466963 PPLO60437 1756 aa8.76□□□□□ -1.01
CXXC4-202ENST00000466963 COL14A1Q05707 1796 aaKnown RBP8.75□□□□□ -1.01
CXXC4-202ENST00000466963 DLC1Q96QB1 1528 aa8.75□□□□□ -1.01
CXXC4-202ENST00000466963 C8orf37Q96NL8 207 aa8.75□□□□□ -1.01
CXXC4-202ENST00000466963 ABCC11Q96J66 1382 aa8.75□□□□□ -1.01
CXXC4-202ENST00000466963 BRD4O60885 1362 aaPredicted RBP8.75□□□□□ -1.01
CXXC4-202ENST00000466963 NINLQ9Y2I6 1382 aa8.74□□□□□ -1.01
CXXC4-202ENST00000466963 HMGB2P26583 209 aaKnown RBP8.74□□□□□ -1.01
CXXC4-202ENST00000466963 GLI3P10071 1580 aa8.73□□□□□ -1.01
CXXC4-202ENST00000466963 CLTCL1P53675 1640 aa8.73□□□□□ -1.01
CXXC4-202ENST00000466963 NRXN1Q9ULB1 1477 aa8.73□□□□□ -1.01
CXXC4-202ENST00000466963 NUP155O75694 1391 aa8.72□□□□□ -1.01
CXXC4-202ENST00000466963 TNS3Q68CZ2 1445 aa8.72□□□□□ -1.01
CXXC4-202ENST00000466963 PLCH1Q4KWH8 1693 aa8.72□□□□□ -1.01
CXXC4-202ENST00000466963 METP08581 1390 aa8.71□□□□□ -1.01
CXXC4-202ENST00000466963 NRAPQ86VF7 1730 aa8.71□□□□□ -1.01
CXXC4-202ENST00000466963 ABCA3Q99758 1704 aa8.71□□□□□ -1.01
CXXC4-202ENST00000466963 SPATA31A3Q5VYP0 1347 aa8.71□□□□□ -1.02
CXXC4-202ENST00000466963 KANK4Q5T7N3 995 aaPredicted RBP8.71□□□□□ -1.02
CXXC4-202ENST00000466963 RBM33Q96EV2 1170 aaKnown RBP8.71□□□□□ -1.02
CXXC4-202ENST00000466963 THSD7AQ9UPZ6 1657 aa8.71□□□□□ -1.02
CXXC4-202ENST00000466963 IFT172Q9UG01 1749 aa8.7□□□□□ -1.02
CXXC4-202ENST00000466963 RREB1Q92766 1687 aa8.7□□□□□ -1.02
CXXC4-202ENST00000466963 NAIPQ13075 1403 aa8.69□□□□□ -1.02
CXXC4-202ENST00000466963 ATP7BP35670 1465 aa8.69□□□□□ -1.02
CXXC4-202ENST00000466963 CHGAP10645 457 aaKnown RBP8.67□□□□□ -1.02
CXXC4-202ENST00000466963 KRT27Q7Z3Y8 459 aa8.67□□□□□ -1.02
CXXC4-202ENST00000466963 ITSN1Q15811 1721 aa8.67□□□□□ -1.02
CXXC4-202ENST00000466963 TNS1Q9HBL0 1735 aaKnown RBP8.67□□□□□ -1.02
CXXC4-202ENST00000466963 BRWD3Q6RI45 1802 aa8.67□□□□□ -1.02
CXXC4-202ENST00000466963 BCL9O00512 1426 aa8.66□□□□□ -1.02
CXXC4-202ENST00000466963 ROBO2Q9HCK4 1378 aa8.66□□□□□ -1.02
CXXC4-202ENST00000466963 ZNF326Q5BKZ1 582 aaKnown RBP8.66□□□□□ -1.02
CXXC4-202ENST00000466963 NBPF8Q3BBV2 869 aa8.65□□□□□ -1.02
CXXC4-202ENST00000466963 NBPF14Q5TI25 921 aa8.65□□□□□ -1.02
CXXC4-202ENST00000466963 ABCC6O95255 1503 aa8.65□□□□□ -1.03
CXXC4-202ENST00000466963 ALS2Q96Q42 1657 aa8.65□□□□□ -1.03
CXXC4-202ENST00000466963 THRAP3Q9Y2W1 955 aaKnown RBP8.65□□□□□ -1.03
CXXC4-202ENST00000466963 FAM196AQ6ZSG2 479 aa8.64□□□□□ -1.03
CXXC4-202ENST00000466963 TRPM3Q9HCF6 1732 aaPredicted RBP8.64□□□□□ -1.03
CXXC4-202ENST00000466963 DHX57Q6P158 1386 aaKnown RBP8.63□□□□□ -1.03
CXXC4-202ENST00000466963 PIK3C2GO75747 1445 aa8.63□□□□□ -1.03
CXXC4-202ENST00000466963 ADAMTS2O95450 1211 aa8.63□□□□□ -1.03
CXXC4-202ENST00000466963 HRCP23327 699 aa8.63□□□□□ -1.03
CXXC4-202ENST00000466963 SEPT12Q8IYM1 358 aa8.63□□□□□ -1.03
CXXC4-202ENST00000466963 CRYBG1Q9Y4K1 1723 aa8.63□□□□□ -1.03
CXXC4-202ENST00000466963 BARGINQ6ZT62 677 aa8.63□□□□□ -1.03
CXXC4-202ENST00000466963 MAP3K5Q99683 1374 aa8.62□□□□□ -1.03
CXXC4-202ENST00000466963 GPRASP1Q5JY77 1395 aa8.62□□□□□ -1.03
CXXC4-202ENST00000466963 CHIC2Q9UKJ5 165 aa8.62□□□□□ -1.03
CXXC4-202ENST00000466963 FAM50AQ14320 339 aaKnown RBP8.61□□□□□ -1.03
CXXC4-202ENST00000466963 EHMT2Q96KQ7 1210 aa8.61□□□□□ -1.03
CXXC4-202ENST00000466963 CDCA7Q9BWT1 371 aaPredicted RBP8.61□□□□□ -1.03
CXXC4-202ENST00000466963 TULP4Q9NRJ4 1543 aa8.61□□□□□ -1.03
CXXC4-202ENST00000466963 ESCO1Q5FWF5 840 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 KRT28Q7Z3Y7 464 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 SPATA31E1Q6ZUB1 1445 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 YTHDC2Q9H6S0 1430 aaKnown RBP8.6□□□□□ -1.03
CXXC4-202ENST00000466963 PARP4Q9UKK3 1724 aaKnown RBP8.6□□□□□ -1.03
CXXC4-202ENST00000466963 AATKQ6ZMQ8 1374 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 SPATA31A5Q5VU36 1347 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 SPATA31A7Q8IWB4 1347 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 PHF8Q9UPP1 1060 aa8.6□□□□□ -1.03
CXXC4-202ENST00000466963 NUP188Q5SRE5 1749 aa8.59□□□□□ -1.03
CXXC4-202ENST00000466963 ORAI2Q96SN7 254 aa8.58□□□□□ -1.04
CXXC4-202ENST00000466963 CPDO75976 1380 aa8.58□□□□□ -1.04
CXXC4-202ENST00000466963 HAP1P54257 671 aaPredicted RBP8.58□□□□□ -1.04
CXXC4-202ENST00000466963 SPON1Q9HCB6 807 aa8.57□□□□□ -1.04
CXXC4-202ENST00000466963 QSER1Q2KHR3 1735 aa8.57□□□□□ -1.04
CXXC4-202ENST00000466963 CAMTA1Q9Y6Y1 1673 aa8.57□□□□□ -1.04
CXXC4-202ENST00000466963 KIAA1210Q9ULL0 1709 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms