RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 CTTNBP2Q8WZ74 1663 aa8.62□□□□□ -1.03
VPS41-211ENST00000466017 MINK1Q8N4C8 1332 aaPredicted RBP8.61□□□□□ -1.03
VPS41-211ENST00000466017 EFCAB5A4FU69 1503 aa8.61□□□□□ -1.03
VPS41-211ENST00000466017 UGGT2Q9NYU1 1516 aa8.61□□□□□ -1.03
VPS41-211ENST00000466017 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.61□□□□□ -1.03
VPS41-211ENST00000466017 BCANQ96GW7 911 aa8.61□□□□□ -1.03
VPS41-211ENST00000466017 ARHGAP35Q9NRY4 1499 aa8.61□□□□□ -1.03
VPS41-211ENST00000466017 ZNF516Q92618 1163 aa8.6□□□□□ -1.03
VPS41-211ENST00000466017 IQGAP2Q13576 1575 aa8.6□□□□□ -1.03
VPS41-211ENST00000466017 MDM2Q00987 491 aaPredicted RBP8.59□□□□□ -1.03
VPS41-211ENST00000466017 TJAP1Q5JTD0 557 aa8.59□□□□□ -1.03
VPS41-211ENST00000466017 CEP170Q5SW79 1584 aa8.59□□□□□ -1.03
VPS41-211ENST00000466017 VPS8Q8N3P4 1428 aa8.58□□□□□ -1.04
VPS41-211ENST00000466017 HDGFP51858 240 aaKnown RBP8.58□□□□□ -1.04
VPS41-211ENST00000466017 KRI1Q8N9T8 703 aaKnown RBP8.58□□□□□ -1.04
VPS41-211ENST00000466017 SLC24A3Q9HC58 644 aa8.58□□□□□ -1.04
VPS41-211ENST00000466017 DAXXQ9UER7 740 aaPredicted RBP8.58□□□□□ -1.04
VPS41-211ENST00000466017 SAMD9Q5K651 1589 aa8.57□□□□□ -1.04
VPS41-211ENST00000466017 SLF2Q8IX21 1173 aa8.57□□□□□ -1.04
VPS41-211ENST00000466017 TMUB1Q9BVT8 246 aa8.57□□□□□ -1.04
VPS41-211ENST00000466017 ARAP1Q96P48 1450 aa8.57□□□□□ -1.04
VPS41-211ENST00000466017 DDX11L8A8MPP1 907 aa8.56□□□□□ -1.04
VPS41-211ENST00000466017 NKX2-3Q8TAU0 364 aa8.56□□□□□ -1.04
VPS41-211ENST00000466017 MTRQ99707 1265 aa8.56□□□□□ -1.04
VPS41-211ENST00000466017 CARMIL2Q6F5E8 1435 aa8.55□□□□□ -1.04
VPS41-211ENST00000466017 COPS2P61201 443 aa8.55□□□□□ -1.04
VPS41-211ENST00000466017 FMN1Q68DA7 1419 aa8.54□□□□□ -1.04
VPS41-211ENST00000466017 DISP1Q96F81 1524 aa8.54□□□□□ -1.04
VPS41-211ENST00000466017 CHD1O14646 1710 aa8.54□□□□□ -1.04
VPS41-211ENST00000466017 ITGBL1O95965 494 aaPredicted RBP8.54□□□□□ -1.04
VPS41-211ENST00000466017 CFHP08603 1231 aa8.54□□□□□ -1.04
VPS41-211ENST00000466017 PUS10Q3MIT2 529 aaKnown RBP8.54□□□□□ -1.04
VPS41-211ENST00000466017 MAP3K1Q13233 1512 aa8.54□□□□□ -1.04
VPS41-211ENST00000466017 TRIM66O15016 1216 aa8.53□□□□□ -1.04
VPS41-211ENST00000466017 BLOC1S3Q6QNY0 202 aa8.53□□□□□ -1.04
VPS41-211ENST00000466017 CLASP1Q7Z460 1538 aa8.53□□□□□ -1.04
VPS41-211ENST00000466017 SHROOM2Q13796 1616 aa8.52□□□□□ -1.05
VPS41-211ENST00000466017 RANGAP1P46060 587 aaPredicted RBP8.52□□□□□ -1.05
VPS41-211ENST00000466017 NYAP1Q6ZVC0 841 aa8.51□□□□□ -1.05
VPS41-211ENST00000466017 RDH13Q8NBN7 331 aa8.51□□□□□ -1.05
VPS41-211ENST00000466017 HLA-CQ95604 372 aa8.51□□□□□ -1.05
VPS41-211ENST00000466017 CASKIN1Q8WXD9 1431 aa8.51□□□□□ -1.05
VPS41-211ENST00000466017 KIAA0556O60303 1618 aa8.51□□□□□ -1.05
VPS41-211ENST00000466017 ACTN4O43707 911 aaKnown RBP8.5□□□□□ -1.05
VPS41-211ENST00000466017 CD46P15529 392 aa8.5□□□□□ -1.05
VPS41-211ENST00000466017 FHOD3Q2V2M9 1422 aa8.5□□□□□ -1.05
VPS41-211ENST00000466017 PRG4Q92954 1404 aaPredicted RBP8.5□□□□□ -1.05
VPS41-211ENST00000466017 TLL1O43897 1013 aa8.49□□□□□ -1.05
VPS41-211ENST00000466017 GCGRP47871 477 aa8.49□□□□□ -1.05
VPS41-211ENST00000466017 KCNC4Q03721 635 aa8.49□□□□□ -1.05
VPS41-211ENST00000466017 FAM217BQ9NTX9 383 aaPredicted RBP8.49□□□□□ -1.05
VPS41-211ENST00000466017 FUT2Q10981 343 aa8.48□□□□□ -1.05
VPS41-211ENST00000466017 PCDHB3Q9Y5E6 796 aa8.48□□□□□ -1.05
VPS41-211ENST00000466017 FYCO1Q9BQS8 1478 aa8.48□□□□□ -1.05
VPS41-211ENST00000466017 AMHR2Q16671 573 aa8.47□□□□□ -1.05
VPS41-211ENST00000466017 IFFO2Q5TF58 517 aa8.47□□□□□ -1.05
VPS41-211ENST00000466017 PARP9Q8IXQ6 854 aa8.47□□□□□ -1.05
VPS41-211ENST00000466017 AK7Q96M32 723 aa8.47□□□□□ -1.05
VPS41-211ENST00000466017 IL21Q9HBE4 155 aa8.47□□□□□ -1.05
VPS41-211ENST00000466017 GPCPD1Q9NPB8 672 aa8.47□□□□□ -1.05
VPS41-211ENST00000466017 PTPRGP23470 1445 aa8.46□□□□□ -1.05
VPS41-211ENST00000466017 MS4A1P11836 297 aa8.46□□□□□ -1.06
VPS41-211ENST00000466017 SSTR3P32745 418 aaPredicted RBP8.46□□□□□ -1.06
VPS41-211ENST00000466017 A0A0G2JS52 829 aa8.45□□□□□ -1.06
VPS41-211ENST00000466017 ZPR1O75312 459 aa8.45□□□□□ -1.06
VPS41-211ENST00000466017 GUCA2AQ02747 115 aa8.45□□□□□ -1.06
VPS41-211ENST00000466017 GIGYF2Q6Y7W6 1299 aaKnown RBP8.45□□□□□ -1.06
VPS41-211ENST00000466017 SCUBE3Q8IX30 993 aa8.45□□□□□ -1.06
VPS41-211ENST00000466017 PRKCSHP14314 528 aaPredicted RBP8.44□□□□□ -1.06
VPS41-211ENST00000466017 PDE4DQ08499 809 aa8.44□□□□□ -1.06
VPS41-211ENST00000466017 MORN1Q5T089 497 aa8.44□□□□□ -1.06
VPS41-211ENST00000466017 CLCN1P35523 988 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 TRIM26Q12899 539 aaPredicted RBP8.43□□□□□ -1.06
VPS41-211ENST00000466017 TTLL12Q14166 644 aaPredicted RBP8.43□□□□□ -1.06
VPS41-211ENST00000466017 KMT5BQ4FZB7 885 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 PPP1R18Q6NYC8 613 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 SLC27A5Q9Y2P5 690 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 UACAQ9BZF9 1416 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 CCDC18Q5T9S5 1454 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 ABCA8O94911 1581 aa8.43□□□□□ -1.06
VPS41-211ENST00000466017 PPEF1O14829 653 aaPredicted RBP8.42□□□□□ -1.06
VPS41-211ENST00000466017 SLC4A3P48751 1232 aa8.42□□□□□ -1.06
VPS41-211ENST00000466017 CDK11AQ9UQ88 783 aaPredicted RBP8.42□□□□□ -1.06
VPS41-211ENST00000466017 UHRF1BP1LA0JNW5 1464 aa8.42□□□□□ -1.06
VPS41-211ENST00000466017 PCF11O94913 1555 aaKnown RBP8.41□□□□□ -1.06
VPS41-211ENST00000466017 TIAM1Q13009 1591 aa8.41□□□□□ -1.06
VPS41-211ENST00000466017 TPRNQ4KMQ1 711 aa8.41□□□□□ -1.06
VPS41-211ENST00000466017 KANK4Q5T7N3 995 aaPredicted RBP8.41□□□□□ -1.06
VPS41-211ENST00000466017 RNF19BQ6ZMZ0 732 aa8.41□□□□□ -1.06
VPS41-211ENST00000466017 SULF1Q8IWU6 871 aa8.41□□□□□ -1.06
VPS41-211ENST00000466017 THAP11Q96EK4 314 aa8.41□□□□□ -1.06
VPS41-211ENST00000466017 GPBP1L1Q9HC44 474 aaPredicted RBP8.41□□□□□ -1.06
VPS41-211ENST00000466017 HECW1Q76N89 1606 aa8.4□□□□□ -1.06
VPS41-211ENST00000466017 RAPGEF6Q8TEU7 1601 aa8.4□□□□□ -1.06
VPS41-211ENST00000466017 EPRSP07814 1512 aaKnown RBP8.4□□□□□ -1.06
VPS41-211ENST00000466017 LRRC9Q6ZRR7 1453 aa8.4□□□□□ -1.06
VPS41-211ENST00000466017 SYMPKQ92797 1274 aaKnown RBP8.4□□□□□ -1.06
VPS41-211ENST00000466017 EMID1Q96A84 441 aaPredicted RBP8.4□□□□□ -1.06
VPS41-211ENST00000466017 NUP153P49790 1475 aaKnown RBP8.39□□□□□ -1.07
VPS41-211ENST00000466017 PLB1Q6P1J6 1458 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms