RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 CFDP1Q9UEE9 299 aaPredicted RBP4.49□□□□□ -1.69
USP40-211ENST00000464956 PIK3R4Q99570 1358 aa4.49□□□□□ -1.69
USP40-211ENST00000464956 PLEKHG1Q9ULL1 1385 aa4.49□□□□□ -1.69
USP40-211ENST00000464956 ABCC5O15440 1437 aa4.48□□□□□ -1.69
USP40-211ENST00000464956 EFCAB6Q5THR3 1501 aa4.48□□□□□ -1.69
USP40-211ENST00000464956 RGS19P49795 217 aa4.48□□□□□ -1.69
USP40-211ENST00000464956 HTRA3P83110 453 aa4.48□□□□□ -1.69
USP40-211ENST00000464956 KLHL34Q8N239 644 aa4.48□□□□□ -1.69
USP40-211ENST00000464956 AMOTL2Q9Y2J4 779 aa4.48□□□□□ -1.69
USP40-211ENST00000464956 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.48□□□□□ -1.69
USP40-211ENST00000464956 NPHP3Q7Z494 1330 aa4.47□□□□□ -1.69
USP40-211ENST00000464956 PREX2Q70Z35 1606 aa4.47□□□□□ -1.69
USP40-211ENST00000464956 RGPD1P0DJD0 1748 aa4.47□□□□□ -1.69
USP40-211ENST00000464956 SUPT5HO00267 1087 aaKnown RBP4.47□□□□□ -1.69
USP40-211ENST00000464956 IDI1Q13907 227 aa4.47□□□□□ -1.69
USP40-211ENST00000464956 ABHD8Q96I13 439 aa4.47□□□□□ -1.69
USP40-211ENST00000464956 BCL11BQ9C0K0 894 aaPredicted RBP4.47□□□□□ -1.69
USP40-211ENST00000464956 PDGFDQ9GZP0 370 aaPredicted RBP4.47□□□□□ -1.69
USP40-211ENST00000464956 CHD4Q14839 1912 aa4.46□□□□□ -1.69
USP40-211ENST00000464956 C1orf167Q5SNV9 1468 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 FYCO1Q9BQS8 1478 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 ADCY9O60503 1353 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 CHGAP10645 457 aaKnown RBP4.46□□□□□ -1.7
USP40-211ENST00000464956 ORAI2Q96SN7 254 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 SGIP1Q9BQI5 828 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 ANO8Q9HCE9 1232 aaPredicted RBP4.46□□□□□ -1.7
USP40-211ENST00000464956 PRDM10Q9NQV6 1147 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 STK32BQ9NY57 414 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 ADGRL3Q9HAR2 1447 aa4.46□□□□□ -1.7
USP40-211ENST00000464956 MYOM1P52179 1685 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 MTUS2Q5JR59 1369 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 CCDC85CA6NKD9 419 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 DLL1O00548 723 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 YBX3P16989 372 aaKnown RBP eCLIP4.45□□□□□ -1.7
USP40-211ENST00000464956 FSTL1Q12841 308 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 C16orf71Q8IYS4 520 aaPredicted RBP4.45□□□□□ -1.7
USP40-211ENST00000464956 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.45□□□□□ -1.7
USP40-211ENST00000464956 RBM46Q8TBY0 533 aaKnown RBP4.45□□□□□ -1.7
USP40-211ENST00000464956 TNKS1BP1Q9C0C2 1729 aaKnown RBP4.45□□□□□ -1.7
USP40-211ENST00000464956 CDC42BPBQ9Y5S2 1711 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 ADGRB3O60242 1522 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 NOS1P29475 1434 aa4.45□□□□□ -1.7
USP40-211ENST00000464956 LRPPRCP42704 1394 aaKnown RBP4.44□□□□□ -1.7
USP40-211ENST00000464956 COL22A1Q8NFW1 1626 aaPredicted RBP4.44□□□□□ -1.7
USP40-211ENST00000464956 POLD1P28340 1107 aa4.44□□□□□ -1.7
USP40-211ENST00000464956 PDE3BQ13370 1112 aa4.44□□□□□ -1.7
USP40-211ENST00000464956 ARHGAP31Q2M1Z3 1444 aa4.44□□□□□ -1.7
USP40-211ENST00000464956 BRWD3Q6RI45 1802 aa4.44□□□□□ -1.7
USP40-211ENST00000464956 TMEM131LA2VDJ0 1609 aa4.43□□□□□ -1.7
USP40-211ENST00000464956 DHX57Q6P158 1386 aaKnown RBP4.43□□□□□ -1.7
USP40-211ENST00000464956 NEXMIFQ5QGS0 1516 aa4.43□□□□□ -1.7
USP40-211ENST00000464956 C11orf95C9JLR9 678 aaPredicted RBP4.43□□□□□ -1.7
USP40-211ENST00000464956 PLSCR1O15162 318 aa4.43□□□□□ -1.7
USP40-211ENST00000464956 SLC52A1Q9NWF4 448 aa4.43□□□□□ -1.7
USP40-211ENST00000464956 CCNB3Q8WWL7 1395 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 TRPM2O94759 1503 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 FOXO3O43524 673 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 CTCFP49711 727 aaPredicted RBP4.42□□□□□ -1.7
USP40-211ENST00000464956 XPCQ01831 940 aaPredicted RBP4.42□□□□□ -1.7
USP40-211ENST00000464956 SLC15A2Q16348 729 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 RSPH4AQ5TD94 716 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 PRPF38BQ5VTL8 546 aaKnown RBP4.42□□□□□ -1.7
USP40-211ENST00000464956 NLGN2Q8NFZ4 835 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 AIDAQ96BJ3 306 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 CFAP44Q96MT7 982 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 RIMS2Q9UQ26 1411 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 ADGRL2O95490 1459 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 SPATA31A5Q5VU36 1347 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 SPATA31A7Q8IWB4 1347 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 PITPNM2Q9BZ72 1349 aa4.42□□□□□ -1.7
USP40-211ENST00000464956 NUP188Q5SRE5 1749 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 TNS1Q9HBL0 1735 aaKnown RBP4.41□□□□□ -1.7
USP40-211ENST00000464956 ZFYVE9O95405 1425 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 ADAMTS13Q76LX8 1427 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 FOXN1O15353 648 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 TSPY4P0CV99 314 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 TSPY10P0CW01 314 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 ESCO1Q5FWF5 840 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 GCC1Q96CN9 775 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 BTG4Q9NY30 223 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 PIK3C2BO00750 1634 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 EHBP1L1Q8N3D4 1523 aa4.41□□□□□ -1.7
USP40-211ENST00000464956 PTPRUQ92729 1446 aa4.4□□□□□ -1.7
USP40-211ENST00000464956 PLEKHG5O94827 1062 aa4.4□□□□□ -1.71
USP40-211ENST00000464956 PMFBP1Q8TBY8 1022 aa4.4□□□□□ -1.71
USP40-211ENST00000464956 CCDC18Q5T9S5 1454 aa4.4□□□□□ -1.71
USP40-211ENST00000464956 MBD5Q9P267 1494 aa4.4□□□□□ -1.71
USP40-211ENST00000464956 RREB1Q92766 1687 aa4.4□□□□□ -1.71
USP40-211ENST00000464956 SPATA31A3Q5VYP0 1347 aa4.4□□□□□ -1.71
USP40-211ENST00000464956 ZNF644Q9H582 1327 aaPredicted RBP4.4□□□□□ -1.71
USP40-211ENST00000464956 LAMC1P11047 1609 aa4.39□□□□□ -1.71
USP40-211ENST00000464956 MPNDQ8N594 471 aa4.39□□□□□ -1.71
USP40-211ENST00000464956 SMC1BQ8NDV3 1235 aa4.39□□□□□ -1.71
USP40-211ENST00000464956 CASZ1Q86V15 1759 aa4.39□□□□□ -1.71
USP40-211ENST00000464956 CHD2O14647 1828 aaKnown RBP4.39□□□□□ -1.71
USP40-211ENST00000464956 WDR90Q96KV7 1748 aa4.38□□□□□ -1.71
USP40-211ENST00000464956 PXDNQ92626 1479 aa4.38□□□□□ -1.71
USP40-211ENST00000464956 CABLES1Q8TDN4 633 aa4.38□□□□□ -1.71
USP40-211ENST00000464956 SLC16A10Q8TF71 515 aa4.38□□□□□ -1.71
USP40-211ENST00000464956 NMRK2Q9NPI5 230 aa4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms