RNA–Protein interactions for RNA: ENST00000464577.1

USP48-206, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 2,089 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-206ENST00000464577 CANXP27824 592 aaKnown RBP9.32□□□□□ -0.92
USP48-206ENST00000464577 WWC1Q8IX03 1113 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 COG6Q9Y2V7 657 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 RTEL1-TNFRSF6BF6WH68 1400 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 PLCH2O75038 1416 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 KANK1Q14678 1352 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 PANK1Q8TE04 598 aa9.32□□□□□ -0.92
USP48-206ENST00000464577 ABCA6Q8N139 1617 aa9.31□□□□□ -0.92
USP48-206ENST00000464577 MAP3K4Q9Y6R4 1608 aa9.31□□□□□ -0.92
USP48-206ENST00000464577 VWDEQ8N2E2 1590 aa9.31□□□□□ -0.92
USP48-206ENST00000464577 FSD2A1L4K1 749 aa9.31□□□□□ -0.92
USP48-206ENST00000464577 TBC1D2Q9BYX2 928 aa9.31□□□□□ -0.92
USP48-206ENST00000464577 SLKQ9H2G2 1235 aaPredicted RBP9.31□□□□□ -0.92
USP48-206ENST00000464577 USP32Q8NFA0 1604 aa9.3□□□□□ -0.92
USP48-206ENST00000464577 RARSP54136 660 aaKnown RBP9.3□□□□□ -0.92
USP48-206ENST00000464577 SP7Q8TDD2 431 aaPredicted RBP9.3□□□□□ -0.92
USP48-206ENST00000464577 RRAGDQ9NQL2 400 aaPredicted RBP9.3□□□□□ -0.92
USP48-206ENST00000464577 ZFYVE16Q7Z3T8 1539 aa9.3□□□□□ -0.92
USP48-206ENST00000464577 WDR63Q8IWG1 891 aa9.3□□□□□ -0.92
USP48-206ENST00000464577 ARAP3Q8WWN8 1544 aa9.29□□□□□ -0.92
USP48-206ENST00000464577 CCDC27Q2M243 656 aa9.29□□□□□ -0.92
USP48-206ENST00000464577 RWDD1Q9H446 243 aaPredicted RBP9.29□□□□□ -0.92
USP48-206ENST00000464577 PDZRN3Q9UPQ7 1066 aa9.29□□□□□ -0.92
USP48-206ENST00000464577 IFT172Q9UG01 1749 aa9.29□□□□□ -0.92
USP48-206ENST00000464577 GOLGA6L3A6NEY3 463 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 RUNDC1Q96C34 613 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 CARD14Q9BXL6 1004 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 PCDHB15Q9Y5E8 787 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 NRXN1Q9ULB1 1477 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 TRAPPC8Q9Y2L5 1435 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 MCM4P33991 863 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 EFCAB2Q5VUJ9 269 aa9.28□□□□□ -0.92
USP48-206ENST00000464577 ADGRL1O94910 1474 aa9.27□□□□□ -0.92
USP48-206ENST00000464577 CHMP5Q9NZZ3 219 aa9.27□□□□□ -0.93
USP48-206ENST00000464577 ISY1Q9ULR0 285 aaKnown RBP9.27□□□□□ -0.93
USP48-206ENST00000464577 SETBP1Q9Y6X0 1596 aa9.27□□□□□ -0.93
USP48-206ENST00000464577 XRCC6P12956 609 aaKnown RBP eCLIP9.27□□□□□ -0.93
USP48-206ENST00000464577 ZC3H13Q5T200 1668 aaKnown RBP9.27□□□□□ -0.93
USP48-206ENST00000464577 ADGRB2O60241 1585 aa9.26□□□□□ -0.93
USP48-206ENST00000464577 RLBP1P12271 317 aa9.26□□□□□ -0.93
USP48-206ENST00000464577 CLCN1P35523 988 aa9.26□□□□□ -0.93
USP48-206ENST00000464577 ZNF518AQ6AHZ1 1483 aa9.26□□□□□ -0.93
USP48-206ENST00000464577 INO80Q9ULG1 1556 aaPredicted RBP9.26□□□□□ -0.93
USP48-206ENST00000464577 CT47B1P0C2W7 299 aaPredicted RBP9.25□□□□□ -0.93
USP48-206ENST00000464577 NSD3Q9BZ95 1437 aa9.25□□□□□ -0.93
USP48-206ENST00000464577 NCOA3Q9Y6Q9 1424 aa9.25□□□□□ -0.93
USP48-206ENST00000464577 MRE11P49959 708 aa9.25□□□□□ -0.93
USP48-206ENST00000464577 MVPQ14764 893 aaKnown RBP9.25□□□□□ -0.93
USP48-206ENST00000464577 KIF1BO60333 1816 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 ZCCHC11Q5TAX3 1644 aaKnown RBP9.24□□□□□ -0.93
USP48-206ENST00000464577 SPAG9O60271 1321 aaKnown RBP9.24□□□□□ -0.93
USP48-206ENST00000464577 DDX11L8A8MPP1 907 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 DSG3P32926 999 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 TCP11L2Q8N4U5 519 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 MYH16Q9H6N6 1097 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 UHRF1BP1LA0JNW5 1464 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 HDAC1Q13547 482 aaPredicted RBP9.24□□□□□ -0.93
USP48-206ENST00000464577 MORC1Q86VD1 984 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 C22orf23Q9BZE7 217 aa9.24□□□□□ -0.93
USP48-206ENST00000464577 MROH1Q8NDA8 1641 aa9.23□□□□□ -0.93
USP48-206ENST00000464577 TRAK2O60296 914 aa9.23□□□□□ -0.93
USP48-206ENST00000464577 CFAP70Q5T0N1 1121 aa9.23□□□□□ -0.93
USP48-206ENST00000464577 ZKSCAN2Q63HK3 967 aa9.23□□□□□ -0.93
USP48-206ENST00000464577 PNNQ9H307 717 aaKnown RBP9.23□□□□□ -0.93
USP48-206ENST00000464577 ATP7AQ04656 1500 aa9.23□□□□□ -0.93
USP48-206ENST00000464577 EFCAB6Q5THR3 1501 aa9.23□□□□□ -0.93
USP48-206ENST00000464577 NSD2O96028 1365 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 CHD1O14646 1710 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 MROH2AA6NES4 1674 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 ZNF692Q9BU19 519 aaPredicted RBP9.22□□□□□ -0.93
USP48-206ENST00000464577 TNNQ9UQP3 1299 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 QRICH2Q9H0J4 1663 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 DDIT3P35638 169 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 CFAP53Q96M91 514 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 ADGRB3O60242 1522 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 FANCAO15360 1455 aa9.22□□□□□ -0.93
USP48-206ENST00000464577 ADGRF5Q8IZF2 1346 aa9.21□□□□□ -0.93
USP48-206ENST00000464577 HSCBQ8IWL3 235 aa9.21□□□□□ -0.93
USP48-206ENST00000464577 DZIP1LQ8IYY4 767 aaKnown RBP9.21□□□□□ -0.93
USP48-206ENST00000464577 SNX21Q969T3 373 aa9.21□□□□□ -0.93
USP48-206ENST00000464577 CIZ1Q9ULV3 898 aaPredicted RBP9.21□□□□□ -0.93
USP48-206ENST00000464577 LMTK2Q8IWU2 1503 aa9.21□□□□□ -0.94
USP48-206ENST00000464577 PTMSP20962 102 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 GLIPR1L2Q4G1C9 344 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 PANK2Q9BZ23 570 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 RRP7AQ9Y3A4 280 aaKnown RBP9.2□□□□□ -0.94
USP48-206ENST00000464577 UGGT1Q9NYU2 1555 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 RBM25P49756 843 aaKnown RBP9.2□□□□□ -0.94
USP48-206ENST00000464577 SMC5Q8IY18 1101 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 FTSJ3Q8IY81 847 aaKnown RBP9.2□□□□□ -0.94
USP48-206ENST00000464577 PUS7Q96PZ0 661 aaKnown RBP9.2□□□□□ -0.94
USP48-206ENST00000464577 GRPEL1Q9HAV7 217 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 ADGRB1O14514 1584 aa9.2□□□□□ -0.94
USP48-206ENST00000464577 MFAP1P55081 439 aaKnown RBP9.19□□□□□ -0.94
USP48-206ENST00000464577 NEUROD2Q15784 382 aa9.19□□□□□ -0.94
USP48-206ENST00000464577 BCL2L13Q9BXK5 485 aa9.19□□□□□ -0.94
USP48-206ENST00000464577 DDX19BQ9UMR2 479 aa9.19□□□□□ -0.94
USP48-206ENST00000464577 ABCA9Q8IUA7 1624 aa9.19□□□□□ -0.94
USP48-206ENST00000464577 RRP9O43818 475 aaKnown RBP9.19□□□□□ -0.94
USP48-206ENST00000464577 NAP1L5Q96NT1 182 aaPredicted RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms