RNA–Protein interactions for RNA: ENST00000463478.1

HERC4-208, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 3

Gene HERC4, Length 546 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-208ENST00000463478 WNT2BQ93097 391 aa8.65□□□□□ -1.02
HERC4-208ENST00000463478 CLUAP1Q96AJ1 413 aa8.65□□□□□ -1.02
HERC4-208ENST00000463478 SPDYE5A6NIY4 337 aa8.64□□□□□ -1.03
HERC4-208ENST00000463478 AP1G2O75843 785 aa8.64□□□□□ -1.03
HERC4-208ENST00000463478 ATP6V1AP38606 617 aa8.64□□□□□ -1.03
HERC4-208ENST00000463478 SNRKQ9NRH2 765 aa8.64□□□□□ -1.03
HERC4-208ENST00000463478 HPS5Q9UPZ3 1129 aa8.64□□□□□ -1.03
HERC4-208ENST00000463478 SOWAHBA6NEL2 793 aa8.63□□□□□ -1.03
HERC4-208ENST00000463478 PPP4CP60510 307 aa8.63□□□□□ -1.03
HERC4-208ENST00000463478 PUS10Q3MIT2 529 aaKnown RBP8.63□□□□□ -1.03
HERC4-208ENST00000463478 C6orf229H3BNL8 230 aa8.62□□□□□ -1.03
HERC4-208ENST00000463478 ACTN4O43707 911 aaKnown RBP8.62□□□□□ -1.03
HERC4-208ENST00000463478 MTMR2Q13614 643 aa8.62□□□□□ -1.03
HERC4-208ENST00000463478 PRR14Q9BWN1 585 aa8.62□□□□□ -1.03
HERC4-208ENST00000463478 RAD21O60216 631 aa8.61□□□□□ -1.03
HERC4-208ENST00000463478 TSC1Q92574 1164 aa8.61□□□□□ -1.03
HERC4-208ENST00000463478 POM121Q96HA1 1249 aa8.61□□□□□ -1.03
HERC4-208ENST00000463478 TSR3Q9UJK0 312 aaKnown RBP8.61□□□□□ -1.03
HERC4-208ENST00000463478 A6NJR5 290 aa8.6□□□□□ -1.03
HERC4-208ENST00000463478 USP17L8P0C7I0 530 aa8.6□□□□□ -1.03
HERC4-208ENST00000463478 PTPN5P54829 565 aa8.6□□□□□ -1.03
HERC4-208ENST00000463478 APLP1P51693 650 aa8.59□□□□□ -1.03
HERC4-208ENST00000463478 MORN1Q5T089 497 aa8.59□□□□□ -1.03
HERC4-208ENST00000463478 MTMR14Q8NCE2 650 aa8.59□□□□□ -1.03
HERC4-208ENST00000463478 SYMPKQ92797 1274 aaKnown RBP8.59□□□□□ -1.03
HERC4-208ENST00000463478 HELBQ8NG08 1087 aaPredicted RBP8.58□□□□□ -1.04
HERC4-208ENST00000463478 PLA2G2EQ9NZK7 142 aa8.58□□□□□ -1.04
HERC4-208ENST00000463478 SLC27A5Q9Y2P5 690 aa8.58□□□□□ -1.04
HERC4-208ENST00000463478 CFAP99D6REC4 459 aa8.57□□□□□ -1.04
HERC4-208ENST00000463478 PROSER2Q86WR7 435 aaPredicted RBP8.57□□□□□ -1.04
HERC4-208ENST00000463478 COG6Q9Y2V7 657 aa8.57□□□□□ -1.04
HERC4-208ENST00000463478 ARID3CA6NKF2 412 aa8.56□□□□□ -1.04
HERC4-208ENST00000463478 CTDSPL2Q05D32 466 aa8.56□□□□□ -1.04
HERC4-208ENST00000463478 Q3C1V9 767 aa8.56□□□□□ -1.04
HERC4-208ENST00000463478 WBP1LQ9NX94 342 aa8.56□□□□□ -1.04
HERC4-208ENST00000463478 PCDHB3Q9Y5E6 796 aa8.56□□□□□ -1.04
HERC4-208ENST00000463478 APBB1O00213 710 aa8.55□□□□□ -1.04
HERC4-208ENST00000463478 TRAK2O60296 914 aa8.55□□□□□ -1.04
HERC4-208ENST00000463478 PRR7Q8TB68 274 aa8.55□□□□□ -1.04
HERC4-208ENST00000463478 RNF19BQ6ZMZ0 732 aa8.54□□□□□ -1.04
HERC4-208ENST00000463478 RETREG3Q86VR2 466 aa8.54□□□□□ -1.04
HERC4-208ENST00000463478 GDPD2Q9HCC8 539 aa8.54□□□□□ -1.04
HERC4-208ENST00000463478 PRM3Q9NNZ6 103 aa8.54□□□□□ -1.04
HERC4-208ENST00000463478 BLOC1S3Q6QNY0 202 aa8.53□□□□□ -1.04
HERC4-208ENST00000463478 SOCS7O14512 581 aa8.52□□□□□ -1.05
HERC4-208ENST00000463478 NR1I2O75469 434 aa8.52□□□□□ -1.05
HERC4-208ENST00000463478 ABL2P42684 1182 aa8.52□□□□□ -1.05
HERC4-208ENST00000463478 LRRN4Q8WUT4 740 aa8.52□□□□□ -1.05
HERC4-208ENST00000463478 HMX1Q9NP08 348 aaPredicted RBP8.52□□□□□ -1.05
HERC4-208ENST00000463478 TBC1D2BQ9UPU7 963 aa8.52□□□□□ -1.05
HERC4-208ENST00000463478 NYAP1Q6ZVC0 841 aa8.51□□□□□ -1.05
HERC4-208ENST00000463478 SCUBE3Q8IX30 993 aa8.51□□□□□ -1.05
HERC4-208ENST00000463478 C1orf115Q9H7X2 142 aa8.51□□□□□ -1.05
HERC4-208ENST00000463478 FMNL1O95466 1100 aaPredicted RBP8.5□□□□□ -1.05
HERC4-208ENST00000463478 COPS2P61201 443 aa8.5□□□□□ -1.05
HERC4-208ENST00000463478 WWC1Q8IX03 1113 aa8.5□□□□□ -1.05
HERC4-208ENST00000463478 FNBP4Q8N3X1 1017 aaPredicted RBP8.5□□□□□ -1.05
HERC4-208ENST00000463478 GJD4Q96KN9 370 aaPredicted RBP8.5□□□□□ -1.05
HERC4-208ENST00000463478 ARID3AQ99856 593 aa8.5□□□□□ -1.05
HERC4-208ENST00000463478 USB1Q9BQ65 265 aaKnown RBP8.5□□□□□ -1.05
HERC4-208ENST00000463478 ZNF777Q9ULD5 760 aaPredicted RBP8.5□□□□□ -1.05
HERC4-208ENST00000463478 NDUFB9Q9Y6M9 179 aa8.5□□□□□ -1.05
HERC4-208ENST00000463478 IFFO2Q5TF58 517 aa8.49□□□□□ -1.05
HERC4-208ENST00000463478 BRICD5Q6PL45 260 aa8.49□□□□□ -1.05
HERC4-208ENST00000463478 PER1O15534 1290 aaPredicted RBP8.48□□□□□ -1.05
HERC4-208ENST00000463478 ZNF330Q9Y3S2 320 aaPredicted RBP8.48□□□□□ -1.05
HERC4-208ENST00000463478 SALL2Q9Y467 1007 aaPredicted RBP8.48□□□□□ -1.05
HERC4-208ENST00000463478 THAP11Q96EK4 314 aa8.47□□□□□ -1.05
HERC4-208ENST00000463478 TRIM34Q9BYJ4 488 aa8.47□□□□□ -1.05
HERC4-208ENST00000463478 ITGBL1O95965 494 aaPredicted RBP8.46□□□□□ -1.06
HERC4-208ENST00000463478 DESI1Q6ICB0 168 aa8.46□□□□□ -1.06
HERC4-208ENST00000463478 EPS8L1Q8TE68 723 aa8.46□□□□□ -1.06
HERC4-208ENST00000463478 ARXQ96QS3 562 aa8.46□□□□□ -1.06
HERC4-208ENST00000463478 NR6A1Q15406 480 aa8.45□□□□□ -1.06
HERC4-208ENST00000463478 SPSB2Q99619 263 aa8.45□□□□□ -1.06
HERC4-208ENST00000463478 JUNDP17535 347 aa8.44□□□□□ -1.06
HERC4-208ENST00000463478 LYPD8Q6UX82 237 aa8.44□□□□□ -1.06
HERC4-208ENST00000463478 TLL1O43897 1013 aa8.43□□□□□ -1.06
HERC4-208ENST00000463478 CCDC82Q8N4S0 544 aa8.43□□□□□ -1.06
HERC4-208ENST00000463478 MTRQ99707 1265 aa8.43□□□□□ -1.06
HERC4-208ENST00000463478 IRF5Q13568 498 aa8.42□□□□□ -1.06
HERC4-208ENST00000463478 MSS51Q4VC12 460 aa8.42□□□□□ -1.06
HERC4-208ENST00000463478 HOMEZQ8IX15 550 aa8.42□□□□□ -1.06
HERC4-208ENST00000463478 POM121CA8CG34 1229 aa8.41□□□□□ -1.06
HERC4-208ENST00000463478 GPR37L1O60883 481 aa8.41□□□□□ -1.06
HERC4-208ENST00000463478 ZPR1O75312 459 aa8.41□□□□□ -1.06
HERC4-208ENST00000463478 FAM160A2Q8N612 972 aaPredicted RBP8.41□□□□□ -1.06
HERC4-208ENST00000463478 PRDM9Q9NQV7 894 aa8.41□□□□□ -1.06
HERC4-208ENST00000463478 A0A0G2JS52 829 aa8.4□□□□□ -1.06
HERC4-208ENST00000463478 ADH1BP00325 375 aa8.4□□□□□ -1.06
HERC4-208ENST00000463478 PTPRNQ16849 979 aa8.4□□□□□ -1.06
HERC4-208ENST00000463478 CCDC97Q96F63 343 aaPredicted RBP8.4□□□□□ -1.06
HERC4-208ENST00000463478 CTHP32929 405 aa8.39□□□□□ -1.07
HERC4-208ENST00000463478 VAC14Q08AM6 782 aa8.39□□□□□ -1.07
HERC4-208ENST00000463478 WASHC4Q2M389 1173 aa8.39□□□□□ -1.07
HERC4-208ENST00000463478 PNMA1Q8ND90 353 aa8.39□□□□□ -1.07
HERC4-208ENST00000463478 IL21Q9HBE4 155 aa8.39□□□□□ -1.07
HERC4-208ENST00000463478 MAP10Q9P2G4 905 aa8.39□□□□□ -1.07
HERC4-208ENST00000463478 DXOO77932 396 aaKnown RBP8.38□□□□□ -1.07
HERC4-208ENST00000463478 F12P00748 615 aaPredicted RBP8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms