RNA–Protein interactions for RNA: ENST00000458530.1

VPS50-207, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 667 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-207ENST00000458530 STAC3Q96MF2 364 aa12.64□□□□□ -0.39
VPS50-207ENST00000458530 CLEC11AQ9Y240 323 aa12.64□□□□□ -0.39
VPS50-207ENST00000458530 PLEKHG1Q9ULL1 1385 aa12.64□□□□□ -0.39
VPS50-207ENST00000458530 RALGAPBQ86X10 1494 aa12.64□□□□□ -0.39
VPS50-207ENST00000458530 LAMC1P11047 1609 aa12.63□□□□□ -0.39
VPS50-207ENST00000458530 TRPM1Q7Z4N2 1603 aa12.63□□□□□ -0.39
VPS50-207ENST00000458530 IFT172Q9UG01 1749 aa12.63□□□□□ -0.39
VPS50-207ENST00000458530 SRCAPQ6ZRS2 3230 aa12.63□□□□□ -0.39
VPS50-207ENST00000458530 DIP2AQ14689 1571 aa12.63□□□□□ -0.39
VPS50-207ENST00000458530 SLC52A1Q9NWF4 448 aa12.62□□□□□ -0.39
VPS50-207ENST00000458530 SPATA31E1Q6ZUB1 1445 aa12.62□□□□□ -0.39
VPS50-207ENST00000458530 STAG3Q9UJ98 1225 aa12.61□□□□□ -0.39
VPS50-207ENST00000458530 KIAA1210Q9ULL0 1709 aa12.61□□□□□ -0.39
VPS50-207ENST00000458530 DIEXFQ68CQ4 756 aaKnown RBP12.6□□□□□ -0.39
VPS50-207ENST00000458530 TBX22Q9Y458 520 aa12.6□□□□□ -0.39
VPS50-207ENST00000458530 EIF4G2P78344 907 aaKnown RBP eCLIP12.59□□□□□ -0.39
VPS50-207ENST00000458530 DCAF11Q8TEB1 546 aa12.59□□□□□ -0.39
VPS50-207ENST00000458530 ADAMTS13Q76LX8 1427 aa12.59□□□□□ -0.39
VPS50-207ENST00000458530 PRAG1Q86YV5 1406 aa12.59□□□□□ -0.39
VPS50-207ENST00000458530 PPLO60437 1756 aa12.58□□□□□ -0.39
VPS50-207ENST00000458530 MYOM2P54296 1465 aa12.58□□□□□ -0.4
VPS50-207ENST00000458530 PIK3R4Q99570 1358 aa12.57□□□□□ -0.4
VPS50-207ENST00000458530 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.57□□□□□ -0.4
VPS50-207ENST00000458530 RXRBP28702 533 aa12.57□□□□□ -0.4
VPS50-207ENST00000458530 SPDYE1Q8NFV5 336 aaPredicted RBP12.57□□□□□ -0.4
VPS50-207ENST00000458530 C19orf44Q9H6X5 657 aa12.57□□□□□ -0.4
VPS50-207ENST00000458530 TMEM131LA2VDJ0 1609 aa12.57□□□□□ -0.4
VPS50-207ENST00000458530 RIMS2Q9UQ26 1411 aa12.56□□□□□ -0.4
VPS50-207ENST00000458530 FXR2P51116 673 aaKnown RBP eCLIP12.56□□□□□ -0.4
VPS50-207ENST00000458530 ZNF326Q5BKZ1 582 aaKnown RBP12.56□□□□□ -0.4
VPS50-207ENST00000458530 CADPS2Q86UW7 1296 aa12.56□□□□□ -0.4
VPS50-207ENST00000458530 DCCP43146 1447 aa12.55□□□□□ -0.4
VPS50-207ENST00000458530 NBPF8Q3BBV2 869 aa12.55□□□□□ -0.4
VPS50-207ENST00000458530 RGL3Q3MIN7 710 aa12.55□□□□□ -0.4
VPS50-207ENST00000458530 BRINP3Q76B58 766 aa12.55□□□□□ -0.4
VPS50-207ENST00000458530 MYO5BQ9ULV0 1848 aa12.54□□□□□ -0.4
VPS50-207ENST00000458530 KDM2AQ9Y2K7 1162 aa12.54□□□□□ -0.4
VPS50-207ENST00000458530 ROCK2O75116 1388 aaKnown RBP12.54□□□□□ -0.4
VPS50-207ENST00000458530 RGS12O14924 1447 aa12.54□□□□□ -0.4
VPS50-207ENST00000458530 MEX3CQ5U5Q3 659 aaKnown RBP12.53□□□□□ -0.4
VPS50-207ENST00000458530 RPGRIP1LQ68CZ1 1315 aa12.53□□□□□ -0.4
VPS50-207ENST00000458530 AFF2P51816 1311 aa12.52□□□□□ -0.41
VPS50-207ENST00000458530 GPRASP1Q5JY77 1395 aa12.52□□□□□ -0.41
VPS50-207ENST00000458530 USP47Q96K76 1375 aa12.52□□□□□ -0.41
VPS50-207ENST00000458530 PTPRUQ92729 1446 aa12.52□□□□□ -0.41
VPS50-207ENST00000458530 ASXL1Q8IXJ9 1541 aa12.52□□□□□ -0.41
VPS50-207ENST00000458530 SPDYE4A6NLX3 237 aa12.51□□□□□ -0.41
VPS50-207ENST00000458530 HSPA5P11021 654 aaKnown RBP12.51□□□□□ -0.41
VPS50-207ENST00000458530 HDGFP51858 240 aaKnown RBP12.51□□□□□ -0.41
VPS50-207ENST00000458530 NHSL1Q5SYE7 1610 aa12.51□□□□□ -0.41
VPS50-207ENST00000458530 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS50-207ENST00000458530 CARD11Q9BXL7 1154 aa12.5□□□□□ -0.41
VPS50-207ENST00000458530 MST1RQ04912 1400 aa12.5□□□□□ -0.41
VPS50-207ENST00000458530 NRXN1Q9ULB1 1477 aa12.49□□□□□ -0.41
VPS50-207ENST00000458530 ATF3P18847 181 aa12.49□□□□□ -0.41
VPS50-207ENST00000458530 XRN1Q8IZH2 1706 aaKnown RBP12.48□□□□□ -0.41
VPS50-207ENST00000458530 SETBP1Q9Y6X0 1596 aa12.48□□□□□ -0.41
VPS50-207ENST00000458530 NEXMIFQ5QGS0 1516 aa12.48□□□□□ -0.41
VPS50-207ENST00000458530 CHGAP10645 457 aaKnown RBP12.48□□□□□ -0.41
VPS50-207ENST00000458530 RBM6P78332 1123 aaKnown RBP12.48□□□□□ -0.41
VPS50-207ENST00000458530 BCANQ96GW7 911 aa12.48□□□□□ -0.41
VPS50-207ENST00000458530 EIF3AQ14152 1382 aaKnown RBP12.47□□□□□ -0.41
VPS50-207ENST00000458530 PNPLA6Q8IY17 1366 aa12.47□□□□□ -0.41
VPS50-207ENST00000458530 AMOTL2Q9Y2J4 779 aa12.46□□□□□ -0.41
VPS50-207ENST00000458530 NRXN3Q9Y4C0 1643 aa12.46□□□□□ -0.41
VPS50-207ENST00000458530 NUTM2BA6NNL0 878 aaPredicted RBP12.45□□□□□ -0.42
VPS50-207ENST00000458530 NUTM2EB1AL46 878 aaPredicted RBP12.45□□□□□ -0.42
VPS50-207ENST00000458530 NUTM2AQ8IVF1 878 aaPredicted RBP12.45□□□□□ -0.42
VPS50-207ENST00000458530 LRRC59Q96AG4 307 aaKnown RBP12.45□□□□□ -0.42
VPS50-207ENST00000458530 QTRT2Q9H974 415 aaKnown RBP12.45□□□□□ -0.42
VPS50-207ENST00000458530 VGFO15240 615 aaPredicted RBP12.44□□□□□ -0.42
VPS50-207ENST00000458530 PRKAR2AP13861 404 aaKnown RBP12.44□□□□□ -0.42
VPS50-207ENST00000458530 C14orf37Q86TY3 774 aa12.44□□□□□ -0.42
VPS50-207ENST00000458530 PIK3C2GO75747 1445 aa12.44□□□□□ -0.42
VPS50-207ENST00000458530 ATAD2Q6PL18 1390 aa12.43□□□□□ -0.42
VPS50-207ENST00000458530 CCDC7Q96M83 1385 aa12.43□□□□□ -0.42
VPS50-207ENST00000458530 SLC24A1O60721 1099 aa12.42□□□□□ -0.42
VPS50-207ENST00000458530 HIRIP3Q9BW71 556 aaPredicted RBP12.42□□□□□ -0.42
VPS50-207ENST00000458530 ADGRL3Q9HAR2 1447 aa12.42□□□□□ -0.42
VPS50-207ENST00000458530 CHADLQ6NUI6 762 aa12.41□□□□□ -0.42
VPS50-207ENST00000458530 C8orf37Q96NL8 207 aa12.41□□□□□ -0.42
VPS50-207ENST00000458530 ATRNO75882 1429 aa12.4□□□□□ -0.42
VPS50-207ENST00000458530 EP400Q96L91 3159 aa12.4□□□□□ -0.42
VPS50-207ENST00000458530 PRR29P0C7W0 189 aa12.4□□□□□ -0.42
VPS50-207ENST00000458530 NUTM2DQ5VT03 806 aaPredicted RBP12.4□□□□□ -0.42
VPS50-207ENST00000458530 FNBP4Q8N3X1 1017 aaPredicted RBP12.4□□□□□ -0.42
VPS50-207ENST00000458530 METP08581 1390 aa12.4□□□□□ -0.42
VPS50-207ENST00000458530 DDX10Q13206 875 aaKnown RBP12.39□□□□□ -0.43
VPS50-207ENST00000458530 NGLY1Q96IV0 654 aa12.39□□□□□ -0.43
VPS50-207ENST00000458530 SOS2Q07890 1332 aaPredicted RBP12.38□□□□□ -0.43
VPS50-207ENST00000458530 WASHC2AQ641Q2 1341 aa12.38□□□□□ -0.43
VPS50-207ENST00000458530 ADGRF5Q8IZF2 1346 aa12.38□□□□□ -0.43
VPS50-207ENST00000458530 PTCH1Q13635 1447 aa12.38□□□□□ -0.43
VPS50-207ENST00000458530 NBPF1Q3BBV0 1214 aa12.38□□□□□ -0.43
VPS50-207ENST00000458530 DDX17Q92841 729 aaKnown RBP12.38□□□□□ -0.43
VPS50-207ENST00000458530 C1orf167Q5SNV9 1468 aa12.38□□□□□ -0.43
VPS50-207ENST00000458530 NALCNQ8IZF0 1738 aa12.37□□□□□ -0.43
VPS50-207ENST00000458530 ST20-MTHFSA0A0A6YYL1 179 aa12.37□□□□□ -0.43
VPS50-207ENST00000458530 QRICH2Q9H0J4 1663 aa12.37□□□□□ -0.43
VPS50-207ENST00000458530 ARHGEF28Q8N1W1 1705 aaKnown RBP12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms