RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 NCKAP5LQ9HCH0 1330 aa12.63□□□□□ -0.39
COL28A1-205ENST00000453441 DIP2AQ14689 1571 aa12.63□□□□□ -0.39
COL28A1-205ENST00000453441 IFT172Q9UG01 1749 aa12.62□□□□□ -0.39
COL28A1-205ENST00000453441 MYOM2P54296 1465 aa12.62□□□□□ -0.39
COL28A1-205ENST00000453441 LTKP29376 864 aa12.62□□□□□ -0.39
COL28A1-205ENST00000453441 SETBP1Q9Y6X0 1596 aa12.61□□□□□ -0.39
COL28A1-205ENST00000453441 KIF12Q96FN5 646 aa12.61□□□□□ -0.39
COL28A1-205ENST00000453441 RGL3Q3MIN7 710 aa12.59□□□□□ -0.39
COL28A1-205ENST00000453441 PIK3R4Q99570 1358 aa12.58□□□□□ -0.4
COL28A1-205ENST00000453441 SGIP1Q9BQI5 828 aa12.58□□□□□ -0.4
COL28A1-205ENST00000453441 TBX22Q9Y458 520 aa12.58□□□□□ -0.4
COL28A1-205ENST00000453441 NRXN1Q9ULB1 1477 aa12.58□□□□□ -0.4
COL28A1-205ENST00000453441 BCANQ96GW7 911 aa12.57□□□□□ -0.4
COL28A1-205ENST00000453441 LAMC1P11047 1609 aa12.57□□□□□ -0.4
COL28A1-205ENST00000453441 GALR2O43603 387 aaPredicted RBP12.56□□□□□ -0.4
COL28A1-205ENST00000453441 CCER1Q8TC90 406 aaPredicted RBP12.56□□□□□ -0.4
COL28A1-205ENST00000453441 TIMELESSQ9UNS1 1208 aa12.56□□□□□ -0.4
COL28A1-205ENST00000453441 NRXN3Q9Y4C0 1643 aa12.55□□□□□ -0.4
COL28A1-205ENST00000453441 PIK3C2GO75747 1445 aa12.55□□□□□ -0.4
COL28A1-205ENST00000453441 ADAMTS13Q76LX8 1427 aa12.55□□□□□ -0.4
COL28A1-205ENST00000453441 TONSLQ96HA7 1378 aa12.55□□□□□ -0.4
COL28A1-205ENST00000453441 CPS1P31327 1500 aa12.54□□□□□ -0.4
COL28A1-205ENST00000453441 MAP3K13O43283 966 aa12.54□□□□□ -0.4
COL28A1-205ENST00000453441 DCAF11Q8TEB1 546 aa12.54□□□□□ -0.4
COL28A1-205ENST00000453441 SIN3AQ96ST3 1273 aa12.54□□□□□ -0.4
COL28A1-205ENST00000453441 CIZ1Q9ULV3 898 aaPredicted RBP12.54□□□□□ -0.4
COL28A1-205ENST00000453441 NWD1Q149M9 1564 aa12.53□□□□□ -0.4
COL28A1-205ENST00000453441 NEUROD1Q13562 356 aa12.53□□□□□ -0.4
COL28A1-205ENST00000453441 NUTM2DQ5VT03 806 aaPredicted RBP12.53□□□□□ -0.4
COL28A1-205ENST00000453441 MS4A3Q96HJ5 214 aa12.53□□□□□ -0.4
COL28A1-205ENST00000453441 ADGRF5Q8IZF2 1346 aa12.53□□□□□ -0.4
COL28A1-205ENST00000453441 NKTRP30414 1462 aaKnown RBP12.53□□□□□ -0.4
COL28A1-205ENST00000453441 ALKQ9UM73 1620 aa12.52□□□□□ -0.4
COL28A1-205ENST00000453441 CHRM1P11229 460 aaPredicted RBP12.52□□□□□ -0.41
COL28A1-205ENST00000453441 SLC26A8Q96RN1 970 aa12.52□□□□□ -0.41
COL28A1-205ENST00000453441 SETD1AO15047 1707 aaKnown RBP12.51□□□□□ -0.41
COL28A1-205ENST00000453441 KIAA1210Q9ULL0 1709 aa12.51□□□□□ -0.41
COL28A1-205ENST00000453441 CHD2O14647 1828 aaKnown RBP12.51□□□□□ -0.41
COL28A1-205ENST00000453441 KCNA6P17658 529 aa12.51□□□□□ -0.41
COL28A1-205ENST00000453441 DCBLD2Q96PD2 775 aa12.51□□□□□ -0.41
COL28A1-205ENST00000453441 PRAG1Q86YV5 1406 aa12.51□□□□□ -0.41
COL28A1-205ENST00000453441 IQSEC2Q5JU85 1478 aa12.51□□□□□ -0.41
COL28A1-205ENST00000453441 PYGBP11216 843 aa12.5□□□□□ -0.41
COL28A1-205ENST00000453441 L3MBTL2Q969R5 705 aa12.5□□□□□ -0.41
COL28A1-205ENST00000453441 C14orf93Q9H972 538 aaKnown RBP12.5□□□□□ -0.41
COL28A1-205ENST00000453441 PCDHB13Q9Y5F0 798 aa12.5□□□□□ -0.41
COL28A1-205ENST00000453441 LTBP4Q8N2S1 1624 aa12.5□□□□□ -0.41
COL28A1-205ENST00000453441 ZNF335Q9H4Z2 1342 aaPredicted RBP12.49□□□□□ -0.41
COL28A1-205ENST00000453441 KDM2AQ9Y2K7 1162 aa12.48□□□□□ -0.41
COL28A1-205ENST00000453441 XRN1Q8IZH2 1706 aaKnown RBP12.48□□□□□ -0.41
COL28A1-205ENST00000453441 NCOA3Q9Y6Q9 1424 aa12.47□□□□□ -0.41
COL28A1-205ENST00000453441 METP08581 1390 aa12.47□□□□□ -0.41
COL28A1-205ENST00000453441 PTCH1Q13635 1447 aa12.46□□□□□ -0.41
COL28A1-205ENST00000453441 LRPPRCP42704 1394 aaKnown RBP12.46□□□□□ -0.41
COL28A1-205ENST00000453441 KNDC1Q76NI1 1749 aa12.46□□□□□ -0.41
COL28A1-205ENST00000453441 TECPR2O15040 1411 aa12.45□□□□□ -0.42
COL28A1-205ENST00000453441 ABCC11Q96J66 1382 aa12.45□□□□□ -0.42
COL28A1-205ENST00000453441 AMOTL2Q9Y2J4 779 aa12.45□□□□□ -0.42
COL28A1-205ENST00000453441 STRCP1A6NGW2 1772 aa12.45□□□□□ -0.42
COL28A1-205ENST00000453441 ADGRB1O14514 1584 aa12.44□□□□□ -0.42
COL28A1-205ENST00000453441 CFAP70Q5T0N1 1121 aa12.44□□□□□ -0.42
COL28A1-205ENST00000453441 SIRT1Q96EB6 747 aa12.44□□□□□ -0.42
COL28A1-205ENST00000453441 PTPRUQ92729 1446 aa12.44□□□□□ -0.42
COL28A1-205ENST00000453441 YTHDC2Q9H6S0 1430 aaKnown RBP12.44□□□□□ -0.42
COL28A1-205ENST00000453441 ASXL1Q8IXJ9 1541 aa12.43□□□□□ -0.42
COL28A1-205ENST00000453441 LRRC7Q96NW7 1537 aa12.43□□□□□ -0.42
COL28A1-205ENST00000453441 DLC1Q96QB1 1528 aa12.43□□□□□ -0.42
COL28A1-205ENST00000453441 TRPM1Q7Z4N2 1603 aa12.42□□□□□ -0.42
COL28A1-205ENST00000453441 POTEIP0CG38 1075 aa12.42□□□□□ -0.42
COL28A1-205ENST00000453441 ZNF467Q7Z7K2 595 aaPredicted RBP12.42□□□□□ -0.42
COL28A1-205ENST00000453441 IFNL1Q8IU54 200 aa12.42□□□□□ -0.42
COL28A1-205ENST00000453441 CERKQ8TCT0 537 aa12.42□□□□□ -0.42
COL28A1-205ENST00000453441 FAM135BQ49AJ0 1406 aa12.42□□□□□ -0.42
COL28A1-205ENST00000453441 RALGAPBQ86X10 1494 aa12.41□□□□□ -0.42
COL28A1-205ENST00000453441 PROSER2Q86WR7 435 aaPredicted RBP12.41□□□□□ -0.42
COL28A1-205ENST00000453441 TMEM94Q12767 1356 aa12.41□□□□□ -0.42
COL28A1-205ENST00000453441 GPRASP1Q5JY77 1395 aa12.41□□□□□ -0.42
COL28A1-205ENST00000453441 TIE1P35590 1138 aa12.4□□□□□ -0.42
COL28A1-205ENST00000453441 TMEM132EQ6IEE7 984 aa12.39□□□□□ -0.43
COL28A1-205ENST00000453441 ROCK2O75116 1388 aaKnown RBP12.39□□□□□ -0.43
COL28A1-205ENST00000453441 DCCP43146 1447 aa12.38□□□□□ -0.43
COL28A1-205ENST00000453441 ASTLQ6HA08 431 aaPredicted RBP12.38□□□□□ -0.43
COL28A1-205ENST00000453441 MSH6P52701 1360 aa12.38□□□□□ -0.43
COL28A1-205ENST00000453441 ROBO2Q9HCK4 1378 aa12.38□□□□□ -0.43
COL28A1-205ENST00000453441 ADGRL3Q9HAR2 1447 aa12.37□□□□□ -0.43
COL28A1-205ENST00000453441 XIRP1Q702N8 1843 aaKnown RBP12.37□□□□□ -0.43
COL28A1-205ENST00000453441 EIF3AQ14152 1382 aaKnown RBP12.37□□□□□ -0.43
COL28A1-205ENST00000453441 ATMINO43313 823 aaPredicted RBP12.36□□□□□ -0.43
COL28A1-205ENST00000453441 NBPF8Q3BBV2 869 aa12.36□□□□□ -0.43
COL28A1-205ENST00000453441 C19orf44Q9H6X5 657 aa12.36□□□□□ -0.43
COL28A1-205ENST00000453441 STK26Q9P289 416 aa12.36□□□□□ -0.43
COL28A1-205ENST00000453441 ARHGEF28Q8N1W1 1705 aaKnown RBP12.36□□□□□ -0.43
COL28A1-205ENST00000453441 C14orf37Q86TY3 774 aa12.35□□□□□ -0.43
COL28A1-205ENST00000453441 TOM1O60784 492 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 NBPF1Q3BBV0 1214 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 CADPS2Q86UW7 1296 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 CARD11Q9BXL7 1154 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 BMP2KQ9NSY1 1161 aaPredicted RBP12.34□□□□□ -0.43
COL28A1-205ENST00000453441 POGKQ9P215 609 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 PCDHB8Q9UN66 801 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms