RNA–Protein interactions for RNA: ENST00000452322.2

LINC00339-205, long intergenic non-protein coding RNA 339, humanhuman

TSL 3

Gene LINC00339, Length 1,391 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-205ENST00000452322 CENPJQ9HC77 1338 aaPredicted RBP16.83■□□□□ 0.28
LINC00339-205ENST00000452322 MSH6P52701 1360 aa16.83■□□□□ 0.28
LINC00339-205ENST00000452322 C14orf37Q86TY3 774 aa16.82■□□□□ 0.28
LINC00339-205ENST00000452322 USP47Q96K76 1375 aa16.82■□□□□ 0.28
LINC00339-205ENST00000452322 DCCP43146 1447 aa16.82■□□□□ 0.28
LINC00339-205ENST00000452322 ADGRB2O60241 1585 aa16.81■□□□□ 0.28
LINC00339-205ENST00000452322 QRICH2Q9H0J4 1663 aa16.81■□□□□ 0.28
LINC00339-205ENST00000452322 C19orf44Q9H6X5 657 aa16.81■□□□□ 0.28
LINC00339-205ENST00000452322 CDC42BPGQ6DT37 1551 aa16.81■□□□□ 0.28
LINC00339-205ENST00000452322 SAFB2Q14151 953 aaKnown RBP eCLIP16.8■□□□□ 0.28
LINC00339-205ENST00000452322 SBNO2Q9Y2G9 1366 aa16.79■□□□□ 0.28
LINC00339-205ENST00000452322 MINK1Q8N4C8 1332 aaPredicted RBP16.77■□□□□ 0.27
LINC00339-205ENST00000452322 CADPS2Q86UW7 1296 aa16.77■□□□□ 0.27
LINC00339-205ENST00000452322 ST20-MTHFSA0A0A6YYL1 179 aa16.76■□□□□ 0.27
LINC00339-205ENST00000452322 ATF3P18847 181 aa16.76■□□□□ 0.27
LINC00339-205ENST00000452322 EIF4G2P78344 907 aaKnown RBP eCLIP16.76■□□□□ 0.27
LINC00339-205ENST00000452322 HIRIP3Q9BW71 556 aaPredicted RBP16.75■□□□□ 0.27
LINC00339-205ENST00000452322 FMN2Q9NZ56 1722 aa16.74■□□□□ 0.27
LINC00339-205ENST00000452322 TULP4Q9NRJ4 1543 aa16.73■□□□□ 0.27
LINC00339-205ENST00000452322 WASLO00401 505 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-205ENST00000452322 SLC24A1O60721 1099 aa16.73■□□□□ 0.27
LINC00339-205ENST00000452322 TESK2Q96S53 571 aa16.73■□□□□ 0.27
LINC00339-205ENST00000452322 MST1RQ04912 1400 aa16.73■□□□□ 0.27
LINC00339-205ENST00000452322 TOM1O60784 492 aa16.72■□□□□ 0.27
LINC00339-205ENST00000452322 HSPA5P11021 654 aaKnown RBP16.72■□□□□ 0.27
LINC00339-205ENST00000452322 EVC2Q86UK5 1308 aa16.7■□□□□ 0.26
LINC00339-205ENST00000452322 ANKARQ7Z5J8 1434 aa16.7■□□□□ 0.26
LINC00339-205ENST00000452322 UBAP1LF5GYI3 381 aa16.7■□□□□ 0.26
LINC00339-205ENST00000452322 C1orf167Q5SNV9 1468 aa16.7■□□□□ 0.26
LINC00339-205ENST00000452322 CDK19Q9BWU1 502 aa16.69■□□□□ 0.26
LINC00339-205ENST00000452322 SLAIN2Q9P270 581 aa16.69■□□□□ 0.26
LINC00339-205ENST00000452322 USP32Q8NFA0 1604 aa16.68■□□□□ 0.26
LINC00339-205ENST00000452322 ATP7BP35670 1465 aa16.67■□□□□ 0.26
LINC00339-205ENST00000452322 SRPK2P78362 688 aaKnown RBP16.66■□□□□ 0.26
LINC00339-205ENST00000452322 TMF1P82094 1093 aa16.66■□□□□ 0.26
LINC00339-205ENST00000452322 NUTM2FA1L443 756 aa16.65■□□□□ 0.26
LINC00339-205ENST00000452322 PRR36Q9H6K5 1346 aa16.65■□□□□ 0.26
LINC00339-205ENST00000452322 ITSN1Q15811 1721 aa16.65■□□□□ 0.26
LINC00339-205ENST00000452322 DISP3Q9P2K9 1392 aa16.65■□□□□ 0.26
LINC00339-205ENST00000452322 RGPD8O14715 1765 aaPredicted RBP16.65■□□□□ 0.26
LINC00339-205ENST00000452322 PUS7Q96PZ0 661 aaKnown RBP16.64■□□□□ 0.26
LINC00339-205ENST00000452322 CABP2Q9NPB3 220 aa16.64■□□□□ 0.26
LINC00339-205ENST00000452322 TOPAZ1Q8N9V7 1692 aa16.64■□□□□ 0.25
LINC00339-205ENST00000452322 ATAD2Q6PL18 1390 aa16.64■□□□□ 0.25
LINC00339-205ENST00000452322 ROBO1Q9Y6N7 1651 aa16.64■□□□□ 0.25
LINC00339-205ENST00000452322 NUDT16Q96DE0 195 aaKnown RBP16.64■□□□□ 0.25
LINC00339-205ENST00000452322 CDCA8Q53HL2 280 aa16.63■□□□□ 0.25
LINC00339-205ENST00000452322 KIF1AQ12756 1690 aa16.62■□□□□ 0.25
LINC00339-205ENST00000452322 PIP4K2BP78356 416 aa16.62■□□□□ 0.25
LINC00339-205ENST00000452322 ESCO1Q5FWF5 840 aa16.62■□□□□ 0.25
LINC00339-205ENST00000452322 BRINP3Q76B58 766 aa16.62■□□□□ 0.25
LINC00339-205ENST00000452322 ORAI2Q96SN7 254 aa16.62■□□□□ 0.25
LINC00339-205ENST00000452322 CCDC61Q9Y6R9 512 aa16.62■□□□□ 0.25
LINC00339-205ENST00000452322 FBXO41Q8TF61 875 aa16.6■□□□□ 0.25
LINC00339-205ENST00000452322 SCAF1Q9H7N4 1312 aaKnown RBP16.6■□□□□ 0.25
LINC00339-205ENST00000452322 PPIP5K1Q6PFW1 1433 aa16.59■□□□□ 0.25
LINC00339-205ENST00000452322 PHF8Q9UPP1 1060 aa16.59■□□□□ 0.25
LINC00339-205ENST00000452322 NHSL1Q5SYE7 1610 aa16.58■□□□□ 0.24
LINC00339-205ENST00000452322 AHDC1Q5TGY3 1603 aaPredicted RBP16.57■□□□□ 0.24
LINC00339-205ENST00000452322 PLEKHG3A1L390 1219 aa16.57■□□□□ 0.24
LINC00339-205ENST00000452322 NINLQ9Y2I6 1382 aa16.57■□□□□ 0.24
LINC00339-205ENST00000452322 C11orf95C9JLR9 678 aaPredicted RBP16.55■□□□□ 0.24
LINC00339-205ENST00000452322 POLR3AO14802 1390 aaPredicted RBP16.55■□□□□ 0.24
LINC00339-205ENST00000452322 NPHP3Q7Z494 1330 aa16.55■□□□□ 0.24
LINC00339-205ENST00000452322 PMFBP1Q8TBY8 1022 aa16.55■□□□□ 0.24
LINC00339-205ENST00000452322 CABP1Q9NZU7 370 aa16.55■□□□□ 0.24
LINC00339-205ENST00000452322 MYOM1P52179 1685 aa16.54■□□□□ 0.24
LINC00339-205ENST00000452322 KIF7Q2M1P5 1343 aa16.53■□□□□ 0.24
LINC00339-205ENST00000452322 FOXO3O43524 673 aa16.53■□□□□ 0.24
LINC00339-205ENST00000452322 NGDNQ8NEJ9 315 aaKnown RBP16.53■□□□□ 0.24
LINC00339-205ENST00000452322 ACEP12821 1306 aa16.53■□□□□ 0.24
LINC00339-205ENST00000452322 PHLPP1O60346 1717 aa16.52■□□□□ 0.24
LINC00339-205ENST00000452322 TMC1Q8TDI8 760 aa16.52■□□□□ 0.24
LINC00339-205ENST00000452322 PXDNQ92626 1479 aa16.52■□□□□ 0.24
LINC00339-205ENST00000452322 SOS2Q07890 1332 aaPredicted RBP16.52■□□□□ 0.23
LINC00339-205ENST00000452322 SLC12A5Q9H2X9 1139 aa16.51■□□□□ 0.23
LINC00339-205ENST00000452322 AKAP12Q02952 1782 aa16.51■□□□□ 0.23
LINC00339-205ENST00000452322 CD163L1Q9NR16 1453 aa16.51■□□□□ 0.23
LINC00339-205ENST00000452322 CPSF1Q10570 1443 aaKnown RBP16.51■□□□□ 0.23
LINC00339-205ENST00000452322 CCDC7Q96M83 1385 aa16.51■□□□□ 0.23
LINC00339-205ENST00000452322 COL16A1Q07092 1604 aaPredicted RBP16.51■□□□□ 0.23
LINC00339-205ENST00000452322 DDX17Q92841 729 aaKnown RBP16.51■□□□□ 0.23
LINC00339-205ENST00000452322 POLR3GLQ9BT43 218 aa16.51■□□□□ 0.23
LINC00339-205ENST00000452322 WASHC2AQ641Q2 1341 aa16.5■□□□□ 0.23
LINC00339-205ENST00000452322 PSME1Q06323 249 aa16.5■□□□□ 0.23
LINC00339-205ENST00000452322 ZNF692Q9BU19 519 aaPredicted RBP16.5■□□□□ 0.23
LINC00339-205ENST00000452322 ANKRD36BQ8N2N9 1353 aa16.49■□□□□ 0.23
LINC00339-205ENST00000452322 MON2Q7Z3U7 1717 aa16.49■□□□□ 0.23
LINC00339-205ENST00000452322 KRT28Q7Z3Y7 464 aa16.49■□□□□ 0.23
LINC00339-205ENST00000452322 TERF2IPQ9NYB0 399 aa16.49■□□□□ 0.23
LINC00339-205ENST00000452322 USP6P35125 1406 aa16.49■□□□□ 0.23
LINC00339-205ENST00000452322 A0A1W2PP64 1363 aa16.48■□□□□ 0.23
LINC00339-205ENST00000452322 BRD4O60885 1362 aaPredicted RBP16.48■□□□□ 0.23
LINC00339-205ENST00000452322 HSPA1LP34931 641 aa16.48■□□□□ 0.23
LINC00339-205ENST00000452322 HDGFL2Q7Z4V5 671 aaPredicted RBP16.48■□□□□ 0.23
LINC00339-205ENST00000452322 TRPM3Q9HCF6 1732 aaPredicted RBP16.48■□□□□ 0.23
LINC00339-205ENST00000452322 SBNO1A3KN83 1393 aa16.47■□□□□ 0.23
LINC00339-205ENST00000452322 XPCQ01831 940 aaPredicted RBP16.47■□□□□ 0.23
LINC00339-205ENST00000452322 KTN1Q86UP2 1357 aaKnown RBP16.47■□□□□ 0.23
LINC00339-205ENST00000452322 NRKQ7Z2Y5 1582 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms