RNA–Protein interactions for RNA: ENST00000449954.1

LINC01961-201, Transcript of long intergenic non-protein coding RNA 1961, humanhuman

TSL 5 BASIC

Gene LINC01961, Length 745 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01961-201ENST00000449954 PIK3R4Q99570 1358 aa12.78□□□□□ -0.36
LINC01961-201ENST00000449954 ZFYVE9O95405 1425 aa12.78□□□□□ -0.36
LINC01961-201ENST00000449954 USP21Q9UK80 565 aa12.77□□□□□ -0.37
LINC01961-201ENST00000449954 ERBINQ96RT1 1412 aa12.77□□□□□ -0.37
LINC01961-201ENST00000449954 MNX1P50219 401 aaPredicted RBP12.76□□□□□ -0.37
LINC01961-201ENST00000449954 PLCD3Q8N3E9 789 aa12.76□□□□□ -0.37
LINC01961-201ENST00000449954 TBX22Q9Y458 520 aa12.76□□□□□ -0.37
LINC01961-201ENST00000449954 PTCH1Q13635 1447 aa12.76□□□□□ -0.37
LINC01961-201ENST00000449954 LMTK2Q8IWU2 1503 aa12.76□□□□□ -0.37
LINC01961-201ENST00000449954 UNC13BO14795 1591 aa12.75□□□□□ -0.37
LINC01961-201ENST00000449954 NOS1P29475 1434 aa12.75□□□□□ -0.37
LINC01961-201ENST00000449954 HDGFP51858 240 aaKnown RBP12.75□□□□□ -0.37
LINC01961-201ENST00000449954 KANK1Q14678 1352 aa12.75□□□□□ -0.37
LINC01961-201ENST00000449954 MST1RQ04912 1400 aa12.74□□□□□ -0.37
LINC01961-201ENST00000449954 PPP1R15AO75807 674 aaPredicted RBP12.74□□□□□ -0.37
LINC01961-201ENST00000449954 ADAMTS2O95450 1211 aa12.74□□□□□ -0.37
LINC01961-201ENST00000449954 IFFO2Q5TF58 517 aa12.74□□□□□ -0.37
LINC01961-201ENST00000449954 FNBP4Q8N3X1 1017 aaPredicted RBP12.74□□□□□ -0.37
LINC01961-201ENST00000449954 SLC52A1Q9NWF4 448 aa12.74□□□□□ -0.37
LINC01961-201ENST00000449954 YY1P25490 414 aa12.73□□□□□ -0.37
LINC01961-201ENST00000449954 FBXO3Q9UK99 471 aa12.73□□□□□ -0.37
LINC01961-201ENST00000449954 SPHKAPQ2M3C7 1700 aa12.73□□□□□ -0.37
LINC01961-201ENST00000449954 BCL9LQ86UU0 1499 aa12.72□□□□□ -0.37
LINC01961-201ENST00000449954 RIMS2Q9UQ26 1411 aa12.72□□□□□ -0.37
LINC01961-201ENST00000449954 SF3B2Q13435 895 aaKnown RBP12.72□□□□□ -0.37
LINC01961-201ENST00000449954 TRPM2O94759 1503 aa12.72□□□□□ -0.37
LINC01961-201ENST00000449954 ADAMTS13Q76LX8 1427 aa12.71□□□□□ -0.38
LINC01961-201ENST00000449954 LAMC1P11047 1609 aa12.7□□□□□ -0.38
LINC01961-201ENST00000449954 HRCP23327 699 aa12.7□□□□□ -0.38
LINC01961-201ENST00000449954 KIF15Q9NS87 1388 aa12.69□□□□□ -0.38
LINC01961-201ENST00000449954 DEFB132Q7Z7B7 95 aa12.69□□□□□ -0.38
LINC01961-201ENST00000449954 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.69□□□□□ -0.38
LINC01961-201ENST00000449954 GCC2Q8IWJ2 1684 aa12.68□□□□□ -0.38
LINC01961-201ENST00000449954 PAK3O75914 559 aaPredicted RBP12.68□□□□□ -0.38
LINC01961-201ENST00000449954 COL22A1Q8NFW1 1626 aaPredicted RBP12.68□□□□□ -0.38
LINC01961-201ENST00000449954 RPRD2Q5VT52 1461 aaKnown RBP12.67□□□□□ -0.38
LINC01961-201ENST00000449954 GABBR2O75899 941 aa12.67□□□□□ -0.38
LINC01961-201ENST00000449954 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.67□□□□□ -0.38
LINC01961-201ENST00000449954 MYO5BQ9ULV0 1848 aa12.67□□□□□ -0.38
LINC01961-201ENST00000449954 TMEM131LA2VDJ0 1609 aa12.66□□□□□ -0.38
LINC01961-201ENST00000449954 XRN1Q8IZH2 1706 aaKnown RBP12.66□□□□□ -0.38
LINC01961-201ENST00000449954 GJD4Q96KN9 370 aaPredicted RBP12.66□□□□□ -0.38
LINC01961-201ENST00000449954 AMOTL2Q9Y2J4 779 aa12.65□□□□□ -0.38
LINC01961-201ENST00000449954 MYOM3Q5VTT5 1437 aa12.64□□□□□ -0.39
LINC01961-201ENST00000449954 ADGRL3Q9HAR2 1447 aa12.64□□□□□ -0.39
LINC01961-201ENST00000449954 PSDA5PKW4 1024 aaPredicted RBP12.64□□□□□ -0.39
LINC01961-201ENST00000449954 DDX17Q92841 729 aaKnown RBP12.64□□□□□ -0.39
LINC01961-201ENST00000449954 MYOM2P54296 1465 aa12.64□□□□□ -0.39
LINC01961-201ENST00000449954 SOS2Q07890 1332 aaPredicted RBP12.63□□□□□ -0.39
LINC01961-201ENST00000449954 PTPRUQ92729 1446 aa12.63□□□□□ -0.39
LINC01961-201ENST00000449954 MARF1Q9Y4F3 1742 aaKnown RBP12.63□□□□□ -0.39
LINC01961-201ENST00000449954 CROCC2H7BZ55 1655 aa12.63□□□□□ -0.39
LINC01961-201ENST00000449954 GLI3P10071 1580 aa12.61□□□□□ -0.39
LINC01961-201ENST00000449954 RALGAPBQ86X10 1494 aa12.61□□□□□ -0.39
LINC01961-201ENST00000449954 BAG6P46379 1132 aa12.61□□□□□ -0.39
LINC01961-201ENST00000449954 BRWD3Q6RI45 1802 aa12.6□□□□□ -0.39
LINC01961-201ENST00000449954 C1orf167Q5SNV9 1468 aa12.6□□□□□ -0.39
LINC01961-201ENST00000449954 NALCNQ8IZF0 1738 aa12.6□□□□□ -0.39
LINC01961-201ENST00000449954 TSPYL2Q9H2G4 693 aaPredicted RBP12.6□□□□□ -0.39
LINC01961-201ENST00000449954 ZBTB47Q9UFB7 747 aaPredicted RBP12.6□□□□□ -0.39
LINC01961-201ENST00000449954 PTPN23Q9H3S7 1636 aa12.59□□□□□ -0.39
LINC01961-201ENST00000449954 ZNF579Q8NAF0 562 aaKnown RBP12.59□□□□□ -0.39
LINC01961-201ENST00000449954 RRP7BPQ9NSQ0 103 aa12.58□□□□□ -0.4
LINC01961-201ENST00000449954 UNC5CLQ8IV45 518 aa12.56□□□□□ -0.4
LINC01961-201ENST00000449954 SLIT2O94813 1529 aa12.56□□□□□ -0.4
LINC01961-201ENST00000449954 SENP3-EIF4A1A0A087X0R7 540 aa12.55□□□□□ -0.4
LINC01961-201ENST00000449954 CLCN6P51797 869 aa12.55□□□□□ -0.4
LINC01961-201ENST00000449954 R3HDM1Q15032 1099 aaKnown RBP12.55□□□□□ -0.4
LINC01961-201ENST00000449954 VASPP50552 380 aaPredicted RBP12.54□□□□□ -0.4
LINC01961-201ENST00000449954 SEPT12Q8IYM1 358 aa12.54□□□□□ -0.4
LINC01961-201ENST00000449954 PHF12Q96QT6 1004 aa12.54□□□□□ -0.4
LINC01961-201ENST00000449954 NRXN3Q9Y4C0 1643 aa12.54□□□□□ -0.4
LINC01961-201ENST00000449954 RGPD1P0DJD0 1748 aa12.54□□□□□ -0.4
LINC01961-201ENST00000449954 ABCC5O15440 1437 aa12.54□□□□□ -0.4
LINC01961-201ENST00000449954 KRT27Q7Z3Y8 459 aa12.53□□□□□ -0.4
LINC01961-201ENST00000449954 DISP2A7MBM2 1401 aa12.53□□□□□ -0.4
LINC01961-201ENST00000449954 CHGAP10645 457 aaKnown RBP12.52□□□□□ -0.41
LINC01961-201ENST00000449954 NPHP3Q7Z494 1330 aa12.52□□□□□ -0.41
LINC01961-201ENST00000449954 ANKRD30AQ9BXX3 1397 aa12.52□□□□□ -0.41
LINC01961-201ENST00000449954 IQGAP3Q86VI3 1631 aa12.51□□□□□ -0.41
LINC01961-201ENST00000449954 RASEFQ8IZ41 740 aa12.51□□□□□ -0.41
LINC01961-201ENST00000449954 KLHL34Q8N239 644 aa12.51□□□□□ -0.41
LINC01961-201ENST00000449954 NINLQ9Y2I6 1382 aa12.51□□□□□ -0.41
LINC01961-201ENST00000449954 ONECUT3O60422 494 aaPredicted RBP12.5□□□□□ -0.41
LINC01961-201ENST00000449954 ORAI2Q96SN7 254 aa12.5□□□□□ -0.41
LINC01961-201ENST00000449954 DAPK1P53355 1430 aa12.5□□□□□ -0.41
LINC01961-201ENST00000449954 PXDNQ92626 1479 aa12.5□□□□□ -0.41
LINC01961-201ENST00000449954 UTRNP46939 3433 aa12.49□□□□□ -0.41
LINC01961-201ENST00000449954 USP32Q8NFA0 1604 aa12.49□□□□□ -0.41
LINC01961-201ENST00000449954 ADGRB2O60241 1585 aa12.49□□□□□ -0.41
LINC01961-201ENST00000449954 ADGRL2O95490 1459 aa12.49□□□□□ -0.41
LINC01961-201ENST00000449954 METP08581 1390 aa12.48□□□□□ -0.41
LINC01961-201ENST00000449954 EN1Q05925 392 aaPredicted RBP12.48□□□□□ -0.41
LINC01961-201ENST00000449954 VPS72Q15906 364 aa12.48□□□□□ -0.41
LINC01961-201ENST00000449954 CEP350Q5VT06 3117 aa12.48□□□□□ -0.41
LINC01961-201ENST00000449954 NWD2Q9ULI1 1742 aa12.48□□□□□ -0.41
LINC01961-201ENST00000449954 ZNF784Q8NCA9 323 aaPredicted RBP12.47□□□□□ -0.41
LINC01961-201ENST00000449954 NUBP1P53384 320 aa12.46□□□□□ -0.41
LINC01961-201ENST00000449954 C1QTNF8P60827 252 aa12.46□□□□□ -0.41
LINC01961-201ENST00000449954 TNS1Q9HBL0 1735 aaKnown RBP12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms