RNA–Protein interactions for RNA: ENST00000446225.5

MCF2-206, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-206ENST00000446225 PDCD7Q8N8D1 485 aaKnown RBP9.33□□□□□ -0.92
MCF2-206ENST00000446225 GRIN2AQ12879 1464 aa9.32□□□□□ -0.92
MCF2-206ENST00000446225 LILRB3O75022 631 aa9.32□□□□□ -0.92
MCF2-206ENST00000446225 POTEHQ6S545 545 aa9.32□□□□□ -0.92
MCF2-206ENST00000446225 G3V3G9 751 aa9.31□□□□□ -0.92
MCF2-206ENST00000446225 PADI6Q6TGC4 694 aa9.31□□□□□ -0.92
MCF2-206ENST00000446225 CCDC125Q86Z20 511 aa9.31□□□□□ -0.92
MCF2-206ENST00000446225 UCN2Q96RP3 112 aa9.31□□□□□ -0.92
MCF2-206ENST00000446225 ALG2Q9H553 416 aa9.31□□□□□ -0.92
MCF2-206ENST00000446225 TRIM35Q9UPQ4 493 aa9.31□□□□□ -0.92
MCF2-206ENST00000446225 CD44P16070 742 aaKnown RBP9.31□□□□□ -0.92
MCF2-206ENST00000446225 RTL5Q5HYW3 569 aaPredicted RBP9.31□□□□□ -0.92
MCF2-206ENST00000446225 CCER1Q8TC90 406 aaPredicted RBP9.31□□□□□ -0.92
MCF2-206ENST00000446225 ANO8Q9HCE9 1232 aaPredicted RBP9.31□□□□□ -0.92
MCF2-206ENST00000446225 MOXD2PA6NHM9 499 aa9.3□□□□□ -0.92
MCF2-206ENST00000446225 NUTM2BA6NNL0 878 aaPredicted RBP9.3□□□□□ -0.92
MCF2-206ENST00000446225 NUTM2EB1AL46 878 aaPredicted RBP9.3□□□□□ -0.92
MCF2-206ENST00000446225 FXR2P51116 673 aaKnown RBP eCLIP9.3□□□□□ -0.92
MCF2-206ENST00000446225 NUTM2DQ5VT03 806 aaPredicted RBP9.3□□□□□ -0.92
MCF2-206ENST00000446225 NUTM2AQ8IVF1 878 aaPredicted RBP9.3□□□□□ -0.92
MCF2-206ENST00000446225 CHMP4AQ9BY43 222 aa9.3□□□□□ -0.92
MCF2-206ENST00000446225 ERCC3P19447 782 aa9.29□□□□□ -0.92
MCF2-206ENST00000446225 NUTM1Q86Y26 1132 aa9.29□□□□□ -0.92
MCF2-206ENST00000446225 SLAIN1Q8ND83 568 aa9.29□□□□□ -0.92
MCF2-206ENST00000446225 NUP160Q12769 1436 aa9.28□□□□□ -0.92
MCF2-206ENST00000446225 GPR37L1O60883 481 aa9.28□□□□□ -0.92
MCF2-206ENST00000446225 DNAJC14Q6Y2X3 702 aaPredicted RBP9.28□□□□□ -0.92
MCF2-206ENST00000446225 PCDHB15Q9Y5E8 787 aa9.28□□□□□ -0.92
MCF2-206ENST00000446225 MAFBQ9Y5Q3 323 aaPredicted RBP9.28□□□□□ -0.92
MCF2-206ENST00000446225 PCDHGA10Q9Y5H3 936 aa9.27□□□□□ -0.93
MCF2-206ENST00000446225 CUL7Q14999 1698 aa9.27□□□□□ -0.93
MCF2-206ENST00000446225 ZNF16P17020 682 aaPredicted RBP9.27□□□□□ -0.93
MCF2-206ENST00000446225 CEP170Q5SW79 1584 aa9.27□□□□□ -0.93
MCF2-206ENST00000446225 CLASP1Q7Z460 1538 aa9.26□□□□□ -0.93
MCF2-206ENST00000446225 NDUFV2P19404 249 aa9.26□□□□□ -0.93
MCF2-206ENST00000446225 GJA5P36382 358 aa9.26□□□□□ -0.93
MCF2-206ENST00000446225 PTCD2Q8WV60 388 aaKnown RBP9.26□□□□□ -0.93
MCF2-206ENST00000446225 HMX1Q9NP08 348 aaPredicted RBP9.26□□□□□ -0.93
MCF2-206ENST00000446225 BMP2KQ9NSY1 1161 aaPredicted RBP9.26□□□□□ -0.93
MCF2-206ENST00000446225 RAPGEF2Q9Y4G8 1499 aa9.26□□□□□ -0.93
MCF2-206ENST00000446225 CD46P15529 392 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 TCF3P15923 654 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 TMEM92Q6UXU6 159 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 CABLES1Q8TDN4 633 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 SIRT1Q96EB6 747 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 BCL2L13Q9BXK5 485 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 EEA1Q15075 1411 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 PRXQ9BXM0 1461 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 PRR7Q8TB68 274 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 JPH4Q96JJ6 628 aa9.25□□□□□ -0.93
MCF2-206ENST00000446225 PPM1GO15355 546 aaPredicted RBP9.24□□□□□ -0.93
MCF2-206ENST00000446225 TYW1BQ6NUM6 668 aa9.24□□□□□ -0.93
MCF2-206ENST00000446225 CERKQ8TCT0 537 aa9.24□□□□□ -0.93
MCF2-206ENST00000446225 L3MBTL3Q96JM7 780 aaPredicted RBP9.24□□□□□ -0.93
MCF2-206ENST00000446225 TRIM34Q9BYJ4 488 aa9.24□□□□□ -0.93
MCF2-206ENST00000446225 RBM46Q8TBY0 533 aaKnown RBP9.23□□□□□ -0.93
MCF2-206ENST00000446225 DRC1Q96MC2 740 aa9.23□□□□□ -0.93
MCF2-206ENST00000446225 ARHGEF11O15085 1522 aa9.22□□□□□ -0.93
MCF2-206ENST00000446225 SOX11P35716 441 aa9.22□□□□□ -0.93
MCF2-206ENST00000446225 PRPF38BQ5VTL8 546 aaKnown RBP9.22□□□□□ -0.93
MCF2-206ENST00000446225 KIAA0586Q9BVV6 1533 aa9.21□□□□□ -0.93
MCF2-206ENST00000446225 CYB5RLQ6IPT4 315 aa9.21□□□□□ -0.93
MCF2-206ENST00000446225 TBC1D9Q6ZT07 1266 aa9.21□□□□□ -0.93
MCF2-206ENST00000446225 GIPC2Q8TF65 315 aa9.21□□□□□ -0.93
MCF2-206ENST00000446225 TMEM164Q5U3C3 297 aa9.21□□□□□ -0.94
MCF2-206ENST00000446225 PHLDB3Q6NSJ2 640 aa9.21□□□□□ -0.94
MCF2-206ENST00000446225 SULF1Q8IWU6 871 aa9.21□□□□□ -0.94
MCF2-206ENST00000446225 TTC13Q8NBP0 860 aa9.21□□□□□ -0.94
MCF2-206ENST00000446225 RBM27Q9P2N5 1060 aaKnown RBP9.21□□□□□ -0.94
MCF2-206ENST00000446225 RIMBP3CA6NJZ7 1639 aa9.2□□□□□ -0.94
MCF2-206ENST00000446225 RIMBP3BA6NNM3 1639 aa9.2□□□□□ -0.94
MCF2-206ENST00000446225 RIMBP3Q9UFD9 1639 aa9.2□□□□□ -0.94
MCF2-206ENST00000446225 CANXP27824 592 aaKnown RBP9.2□□□□□ -0.94
MCF2-206ENST00000446225 SEMA3FQ13275 785 aa9.2□□□□□ -0.94
MCF2-206ENST00000446225 SREK1Q8WXA9 508 aaKnown RBP9.2□□□□□ -0.94
MCF2-206ENST00000446225 ZBTB3Q9H5J0 574 aa9.2□□□□□ -0.94
MCF2-206ENST00000446225 PRG4Q92954 1404 aaPredicted RBP9.2□□□□□ -0.94
MCF2-206ENST00000446225 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.19□□□□□ -0.94
MCF2-206ENST00000446225 CTDSPL2Q05D32 466 aa9.19□□□□□ -0.94
MCF2-206ENST00000446225 NOM1Q5C9Z4 860 aaKnown RBP9.19□□□□□ -0.94
MCF2-206ENST00000446225 STK32AQ8WU08 396 aa9.19□□□□□ -0.94
MCF2-206ENST00000446225 ZMIZ1Q9ULJ6 1067 aa9.19□□□□□ -0.94
MCF2-206ENST00000446225 SMARCA5O60264 1052 aaPredicted RBP9.19□□□□□ -0.94
MCF2-206ENST00000446225 ELOAQ14241 798 aaKnown RBP9.19□□□□□ -0.94
MCF2-206ENST00000446225 OCEL1Q9H607 264 aa9.19□□□□□ -0.94
MCF2-206ENST00000446225 ERCC6L2Q5T890 1561 aa9.18□□□□□ -0.94
MCF2-206ENST00000446225 DDX11L8A8MPP1 907 aa9.18□□□□□ -0.94
MCF2-206ENST00000446225 ATP9BO43861 1147 aa9.18□□□□□ -0.94
MCF2-206ENST00000446225 ARID4AP29374 1257 aaPredicted RBP9.18□□□□□ -0.94
MCF2-206ENST00000446225 C8orf37Q96NL8 207 aa9.18□□□□□ -0.94
MCF2-206ENST00000446225 RCCD1A6NED2 376 aa9.17□□□□□ -0.94
MCF2-206ENST00000446225 IRX5P78411 483 aaPredicted RBP9.17□□□□□ -0.94
MCF2-206ENST00000446225 MARSP56192 900 aaKnown RBP9.17□□□□□ -0.94
MCF2-206ENST00000446225 ARAP1Q96P48 1450 aa9.17□□□□□ -0.94
MCF2-206ENST00000446225 SHROOM2Q13796 1616 aa9.16□□□□□ -0.94
MCF2-206ENST00000446225 C6orf132Q5T0Z8 1188 aa9.16□□□□□ -0.94
MCF2-206ENST00000446225 KANK4Q5T7N3 995 aaPredicted RBP9.16□□□□□ -0.94
MCF2-206ENST00000446225 SOWAHDA6NJG2 315 aa9.15□□□□□ -0.94
MCF2-206ENST00000446225 LRRN4Q8WUT4 740 aa9.15□□□□□ -0.94
MCF2-206ENST00000446225 SPATA32Q96LK8 384 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms