RNA–Protein interactions for RNA: ENST00000444867.1

SEMA3D-202, Transcript of semaphorin 3D, humanhuman

TSL 1 (best) BASIC

Gene SEMA3D, Length 1,605 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3D-202ENST00000444867 ATAD2Q6PL18 1390 aa25.28■■□□□ 1.64
SEMA3D-202ENST00000444867 ABCC11Q96J66 1382 aa25.28■■□□□ 1.64
SEMA3D-202ENST00000444867 PRAM1Q96QH2 718 aa25.27■■□□□ 1.64
SEMA3D-202ENST00000444867 SLC12A5Q9H2X9 1139 aa25.27■■□□□ 1.64
SEMA3D-202ENST00000444867 ADAMTSL3P82987 1691 aa25.27■■□□□ 1.64
SEMA3D-202ENST00000444867 TMEM2Q9UHN6 1383 aa25.27■■□□□ 1.64
SEMA3D-202ENST00000444867 NUDCQ9Y266 331 aa25.26■■□□□ 1.63
SEMA3D-202ENST00000444867 NSD2O96028 1365 aa25.24■■□□□ 1.63
SEMA3D-202ENST00000444867 RIMS1Q86UR5 1692 aaKnown RBP25.23■■□□□ 1.63
SEMA3D-202ENST00000444867 KDM4FA0A1W2PPD8 638 aa25.23■■□□□ 1.63
SEMA3D-202ENST00000444867 PDE3BQ13370 1112 aa25.22■■□□□ 1.63
SEMA3D-202ENST00000444867 SAFB2Q14151 953 aaKnown RBP eCLIP25.22■■□□□ 1.63
SEMA3D-202ENST00000444867 ERICH6BQ5W0A0 696 aa25.22■■□□□ 1.63
SEMA3D-202ENST00000444867 CABP2Q9NPB3 220 aa25.22■■□□□ 1.63
SEMA3D-202ENST00000444867 CGNL1Q0VF96 1302 aa25.21■■□□□ 1.63
SEMA3D-202ENST00000444867 SRPK2P78362 688 aaKnown RBP25.2■■□□□ 1.62
SEMA3D-202ENST00000444867 WDR43Q15061 677 aaKnown RBP eCLIP25.2■■□□□ 1.62
SEMA3D-202ENST00000444867 PELP1Q8IZL8 1130 aaKnown RBP25.2■■□□□ 1.62
SEMA3D-202ENST00000444867 SENP3Q9H4L4 574 aaPredicted RBP25.2■■□□□ 1.62
SEMA3D-202ENST00000444867 TECPR2O15040 1411 aa25.2■■□□□ 1.62
SEMA3D-202ENST00000444867 MINK1Q8N4C8 1332 aaPredicted RBP25.19■■□□□ 1.62
SEMA3D-202ENST00000444867 SIRT1Q96EB6 747 aa25.19■■□□□ 1.62
SEMA3D-202ENST00000444867 CPS1P31327 1500 aa25.19■■□□□ 1.62
SEMA3D-202ENST00000444867 FAM135BQ49AJ0 1406 aa25.18■■□□□ 1.62
SEMA3D-202ENST00000444867 POLR3AO14802 1390 aaPredicted RBP25.17■■□□□ 1.62
SEMA3D-202ENST00000444867 PLEKHG1Q9ULL1 1385 aa25.17■■□□□ 1.62
SEMA3D-202ENST00000444867 SLIT1O75093 1534 aa25.16■■□□□ 1.62
SEMA3D-202ENST00000444867 ANKRD26Q9UPS8 1709 aa25.16■■□□□ 1.62
SEMA3D-202ENST00000444867 METP08581 1390 aa25.16■■□□□ 1.62
SEMA3D-202ENST00000444867 MORC1Q86VD1 984 aa25.15■■□□□ 1.62
SEMA3D-202ENST00000444867 ADAMTS8Q9UP79 889 aa25.15■■□□□ 1.62
SEMA3D-202ENST00000444867 ARHGAP23Q9P227 1491 aa25.14■■□□□ 1.62
SEMA3D-202ENST00000444867 TERF2IPQ9NYB0 399 aa25.14■■□□□ 1.61
SEMA3D-202ENST00000444867 PLPPR3Q6T4P5 718 aa25.13■■□□□ 1.61
SEMA3D-202ENST00000444867 CDK19Q9BWU1 502 aa25.13■■□□□ 1.61
SEMA3D-202ENST00000444867 A0A1W2PP64 1363 aa25.13■■□□□ 1.61
SEMA3D-202ENST00000444867 ADAMTS13Q76LX8 1427 aa25.12■■□□□ 1.61
SEMA3D-202ENST00000444867 CEBPAP49715 358 aaPredicted RBP25.12■■□□□ 1.61
SEMA3D-202ENST00000444867 MED14O60244 1454 aa25.11■■□□□ 1.61
SEMA3D-202ENST00000444867 CD163L1Q9NR16 1453 aa25.11■■□□□ 1.61
SEMA3D-202ENST00000444867 PLEKHH1Q9ULM0 1364 aa25.1■■□□□ 1.61
SEMA3D-202ENST00000444867 ATP7BP35670 1465 aa25.09■■□□□ 1.61
SEMA3D-202ENST00000444867 RNF123Q5XPI4 1314 aa25.09■■□□□ 1.61
SEMA3D-202ENST00000444867 WAPLQ7Z5K2 1190 aa25.08■■□□□ 1.61
SEMA3D-202ENST00000444867 BCANQ96GW7 911 aa25.08■■□□□ 1.61
SEMA3D-202ENST00000444867 EID1Q9Y6B2 187 aa25.08■■□□□ 1.61
SEMA3D-202ENST00000444867 KIF20BQ96Q89 1820 aa25.08■■□□□ 1.61
SEMA3D-202ENST00000444867 SHPRHQ149N8 1683 aa25.08■■□□□ 1.61
SEMA3D-202ENST00000444867 HDGFL2Q7Z4V5 671 aaPredicted RBP25.08■■□□□ 1.6
SEMA3D-202ENST00000444867 DIP2AQ14689 1571 aa25.06■■□□□ 1.6
SEMA3D-202ENST00000444867 TXNDC2Q86VQ3 553 aa25.05■■□□□ 1.6
SEMA3D-202ENST00000444867 ADGRB2O60241 1585 aa25.04■■□□□ 1.6
SEMA3D-202ENST00000444867 LTKP29376 864 aa25.04■■□□□ 1.6
SEMA3D-202ENST00000444867 THEMISQ8N1K5 641 aaPredicted RBP25.04■■□□□ 1.6
SEMA3D-202ENST00000444867 SENP3-EIF4A1A0A087X0R7 540 aa25.03■■□□□ 1.6
SEMA3D-202ENST00000444867 WASLO00401 505 aaPredicted RBP25.03■■□□□ 1.6
SEMA3D-202ENST00000444867 NGEFQ8N5V2 710 aa25.03■■□□□ 1.6
SEMA3D-202ENST00000444867 CFAP53Q96M91 514 aa25.01■■□□□ 1.59
SEMA3D-202ENST00000444867 SALL2Q9Y467 1007 aaPredicted RBP25.01■■□□□ 1.59
SEMA3D-202ENST00000444867 CEP170BQ9Y4F5 1589 aaPredicted RBP25■■□□□ 1.59
SEMA3D-202ENST00000444867 CABP1Q9NZU7 370 aa25■■□□□ 1.59
SEMA3D-202ENST00000444867 IRX6P78412 446 aaPredicted RBP24.99■■□□□ 1.59
SEMA3D-202ENST00000444867 PPP4R2Q9NY27 417 aa24.97■■□□□ 1.59
SEMA3D-202ENST00000444867 TBX22Q9Y458 520 aa24.97■■□□□ 1.59
SEMA3D-202ENST00000444867 ZNF142P52746 1687 aaPredicted RBP24.97■■□□□ 1.59
SEMA3D-202ENST00000444867 CDC42BPGQ6DT37 1551 aa24.97■■□□□ 1.59
SEMA3D-202ENST00000444867 AEBP2Q6ZN18 517 aaPredicted RBP24.97■■□□□ 1.59
SEMA3D-202ENST00000444867 ROBO2Q9HCK4 1378 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 AKAP12Q02952 1782 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 ZNF521Q96K83 1311 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 ITSN1Q15811 1721 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 MON2Q7Z3U7 1717 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 MTHFSP49914 203 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 CPSF1Q10570 1443 aaKnown RBP24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 PPIP5K1Q6PFW1 1433 aa24.96■■□□□ 1.59
SEMA3D-202ENST00000444867 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.95■■□□□ 1.59
SEMA3D-202ENST00000444867 FYB1O15117 783 aa24.95■■□□□ 1.58
SEMA3D-202ENST00000444867 TNNT2P45379 298 aaPredicted RBP24.95■■□□□ 1.58
SEMA3D-202ENST00000444867 PTCH1Q13635 1447 aa24.93■■□□□ 1.58
SEMA3D-202ENST00000444867 EDC4Q6P2E9 1401 aaKnown RBP24.93■■□□□ 1.58
SEMA3D-202ENST00000444867 CDCA7LQ96GN5 454 aa24.93■■□□□ 1.58
SEMA3D-202ENST00000444867 RCAN3Q9UKA8 241 aa24.93■■□□□ 1.58
SEMA3D-202ENST00000444867 PTPRUQ92729 1446 aa24.92■■□□□ 1.58
SEMA3D-202ENST00000444867 NUDT16Q96DE0 195 aaKnown RBP24.92■■□□□ 1.58
SEMA3D-202ENST00000444867 GGNBP2Q9H3C7 697 aa24.92■■□□□ 1.58
SEMA3D-202ENST00000444867 TOPAZ1Q8N9V7 1692 aa24.92■■□□□ 1.58
SEMA3D-202ENST00000444867 CCDC61Q9Y6R9 512 aa24.91■■□□□ 1.58
SEMA3D-202ENST00000444867 XRN1Q8IZH2 1706 aaKnown RBP24.9■■□□□ 1.58
SEMA3D-202ENST00000444867 GOLGA2Q08379 1002 aa24.9■■□□□ 1.58
SEMA3D-202ENST00000444867 CCDC146Q8IYE0 955 aa24.9■■□□□ 1.58
SEMA3D-202ENST00000444867 SETD1BQ9UPS6 1966 aaKnown RBP24.89■■□□□ 1.57
SEMA3D-202ENST00000444867 APAF1O14727 1248 aa24.88■■□□□ 1.57
SEMA3D-202ENST00000444867 SLC26A8Q96RN1 970 aa24.88■■□□□ 1.57
SEMA3D-202ENST00000444867 PIK3R4Q99570 1358 aa24.88■■□□□ 1.57
SEMA3D-202ENST00000444867 RUNDC1Q96C34 613 aa24.87■■□□□ 1.57
SEMA3D-202ENST00000444867 COL3A1P02461 1466 aaPredicted RBP24.87■■□□□ 1.57
SEMA3D-202ENST00000444867 RRP1P56182 461 aaKnown RBP24.86■■□□□ 1.57
SEMA3D-202ENST00000444867 IQSEC2Q5JU85 1478 aa24.86■■□□□ 1.57
SEMA3D-202ENST00000444867 NCBP3Q53F19 620 aaKnown RBP24.86■■□□□ 1.57
SEMA3D-202ENST00000444867 ZNF692Q9BU19 519 aaPredicted RBP24.85■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms