RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 SETD1BQ9UPS6 1966 aaKnown RBP11.01□□□□□ -0.65
CCDC39-201ENST00000442201 PER1O15534 1290 aaPredicted RBP11.01□□□□□ -0.65
CCDC39-201ENST00000442201 SIRT1Q96EB6 747 aa11.01□□□□□ -0.65
CCDC39-201ENST00000442201 MINK1Q8N4C8 1332 aaPredicted RBP11.01□□□□□ -0.65
CCDC39-201ENST00000442201 MED14O60244 1454 aa11□□□□□ -0.65
CCDC39-201ENST00000442201 CNGB1Q14028 1251 aaPredicted RBP11□□□□□ -0.65
CCDC39-201ENST00000442201 TECPR2O15040 1411 aa11□□□□□ -0.65
CCDC39-201ENST00000442201 ZNF142P52746 1687 aaPredicted RBP11□□□□□ -0.65
CCDC39-201ENST00000442201 WAPLQ7Z5K2 1190 aa11□□□□□ -0.65
CCDC39-201ENST00000442201 YTHDC1Q96MU7 727 aaKnown RBP11□□□□□ -0.65
CCDC39-201ENST00000442201 FAM135BQ49AJ0 1406 aa10.99□□□□□ -0.65
CCDC39-201ENST00000442201 SRPK2P78362 688 aaKnown RBP10.99□□□□□ -0.65
CCDC39-201ENST00000442201 KNSTRNQ9Y448 316 aa10.99□□□□□ -0.65
CCDC39-201ENST00000442201 TULP4Q9NRJ4 1543 aa10.99□□□□□ -0.65
CCDC39-201ENST00000442201 TMC1Q8TDI8 760 aa10.98□□□□□ -0.65
CCDC39-201ENST00000442201 KTN1Q86UP2 1357 aaKnown RBP10.98□□□□□ -0.65
CCDC39-201ENST00000442201 PLEKHH1Q9ULM0 1364 aa10.98□□□□□ -0.65
CCDC39-201ENST00000442201 RALBP1Q15311 655 aa10.97□□□□□ -0.65
CCDC39-201ENST00000442201 CABP2Q9NPB3 220 aa10.97□□□□□ -0.65
CCDC39-201ENST00000442201 DIP2AQ14689 1571 aa10.97□□□□□ -0.65
CCDC39-201ENST00000442201 AMOTL2Q9Y2J4 779 aa10.97□□□□□ -0.65
CCDC39-201ENST00000442201 ATAD2Q6PL18 1390 aa10.96□□□□□ -0.65
CCDC39-201ENST00000442201 SLC12A5Q9H2X9 1139 aa10.96□□□□□ -0.65
CCDC39-201ENST00000442201 PIK3R4Q99570 1358 aa10.96□□□□□ -0.65
CCDC39-201ENST00000442201 ROBO2Q9HCK4 1378 aa10.96□□□□□ -0.65
CCDC39-201ENST00000442201 CPS1P31327 1500 aa10.96□□□□□ -0.66
CCDC39-201ENST00000442201 CDK19Q9BWU1 502 aa10.96□□□□□ -0.66
CCDC39-201ENST00000442201 KDM4FA0A1W2PPD8 638 aa10.96□□□□□ -0.66
CCDC39-201ENST00000442201 PTPRUQ92729 1446 aa10.96□□□□□ -0.66
CCDC39-201ENST00000442201 NINLQ9Y2I6 1382 aa10.95□□□□□ -0.66
CCDC39-201ENST00000442201 CC2D1BQ5T0F9 858 aaKnown RBP10.95□□□□□ -0.66
CCDC39-201ENST00000442201 MRS2Q9HD23 443 aa10.95□□□□□ -0.66
CCDC39-201ENST00000442201 MYOM1P52179 1685 aa10.95□□□□□ -0.66
CCDC39-201ENST00000442201 KNDC1Q76NI1 1749 aa10.95□□□□□ -0.66
CCDC39-201ENST00000442201 ERICH6BQ5W0A0 696 aa10.94□□□□□ -0.66
CCDC39-201ENST00000442201 SUPT16HQ9Y5B9 1047 aaKnown RBP10.94□□□□□ -0.66
CCDC39-201ENST00000442201 PARD3Q8TEW0 1356 aa10.94□□□□□ -0.66
CCDC39-201ENST00000442201 WASLO00401 505 aaPredicted RBP10.94□□□□□ -0.66
CCDC39-201ENST00000442201 AMER1Q5JTC6 1135 aaPredicted RBP10.94□□□□□ -0.66
CCDC39-201ENST00000442201 MYBBP1AQ9BQG0 1328 aaKnown RBP10.94□□□□□ -0.66
CCDC39-201ENST00000442201 NPHP4O75161 1426 aaPredicted RBP10.93□□□□□ -0.66
CCDC39-201ENST00000442201 CARD14Q9BXL6 1004 aa10.93□□□□□ -0.66
CCDC39-201ENST00000442201 NPC1L1Q9UHC9 1359 aa10.93□□□□□ -0.66
CCDC39-201ENST00000442201 PTCH1Q13635 1447 aa10.93□□□□□ -0.66
CCDC39-201ENST00000442201 CCDC184Q52MB2 194 aa10.92□□□□□ -0.66
CCDC39-201ENST00000442201 ANKRD36BQ8N2N9 1353 aa10.92□□□□□ -0.66
CCDC39-201ENST00000442201 NCKAP5LQ9HCH0 1330 aa10.92□□□□□ -0.66
CCDC39-201ENST00000442201 TERF2IPQ9NYB0 399 aa10.92□□□□□ -0.66
CCDC39-201ENST00000442201 KCNA6P17658 529 aa10.91□□□□□ -0.66
CCDC39-201ENST00000442201 NLRP13Q86W25 1043 aa10.91□□□□□ -0.66
CCDC39-201ENST00000442201 NSD3Q9BZ95 1437 aa10.91□□□□□ -0.66
CCDC39-201ENST00000442201 BRD4O60885 1362 aaPredicted RBP10.9□□□□□ -0.66
CCDC39-201ENST00000442201 HDGFL2Q7Z4V5 671 aaPredicted RBP10.9□□□□□ -0.67
CCDC39-201ENST00000442201 CABP1Q9NZU7 370 aa10.9□□□□□ -0.67
CCDC39-201ENST00000442201 NUDT16Q96DE0 195 aaKnown RBP10.89□□□□□ -0.67
CCDC39-201ENST00000442201 CGNL1Q0VF96 1302 aa10.89□□□□□ -0.67
CCDC39-201ENST00000442201 CCDC61Q9Y6R9 512 aa10.89□□□□□ -0.67
CCDC39-201ENST00000442201 A0A1W2PP64 1363 aa10.88□□□□□ -0.67
CCDC39-201ENST00000442201 XRN1Q8IZH2 1706 aaKnown RBP10.88□□□□□ -0.67
CCDC39-201ENST00000442201 HSPA2P54652 639 aa10.88□□□□□ -0.67
CCDC39-201ENST00000442201 FAM9BQ8IZU0 186 aa10.88□□□□□ -0.67
CCDC39-201ENST00000442201 ADGRB2O60241 1585 aa10.87□□□□□ -0.67
CCDC39-201ENST00000442201 PPIP5K1Q6PFW1 1433 aa10.86□□□□□ -0.67
CCDC39-201ENST00000442201 ATP7BP35670 1465 aa10.86□□□□□ -0.67
CCDC39-201ENST00000442201 PPP2R1AP30153 589 aa10.86□□□□□ -0.67
CCDC39-201ENST00000442201 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.86□□□□□ -0.67
CCDC39-201ENST00000442201 PRR36Q9H6K5 1346 aa10.86□□□□□ -0.67
CCDC39-201ENST00000442201 NSD2O96028 1365 aa10.86□□□□□ -0.67
CCDC39-201ENST00000442201 MORC1Q86VD1 984 aa10.85□□□□□ -0.67
CCDC39-201ENST00000442201 CD163L1Q9NR16 1453 aa10.85□□□□□ -0.67
CCDC39-201ENST00000442201 PNISRQ8TF01 805 aaKnown RBP10.85□□□□□ -0.67
CCDC39-201ENST00000442201 LMTK3Q96Q04 1460 aa10.84□□□□□ -0.67
CCDC39-201ENST00000442201 NUTM2FA1L443 756 aa10.84□□□□□ -0.67
CCDC39-201ENST00000442201 USP32Q8NFA0 1604 aa10.83□□□□□ -0.68
CCDC39-201ENST00000442201 HNRNPUQ00839 825 aaKnown RBP eCLIP10.83□□□□□ -0.68
CCDC39-201ENST00000442201 ZNF692Q9BU19 519 aaPredicted RBP10.83□□□□□ -0.68
CCDC39-201ENST00000442201 SALL2Q9Y467 1007 aaPredicted RBP10.83□□□□□ -0.68
CCDC39-201ENST00000442201 CHD2O14647 1828 aaKnown RBP10.83□□□□□ -0.68
CCDC39-201ENST00000442201 CPSF1Q10570 1443 aaKnown RBP10.83□□□□□ -0.68
CCDC39-201ENST00000442201 PLEKHG3A1L390 1219 aa10.82□□□□□ -0.68
CCDC39-201ENST00000442201 FYB1O15117 783 aa10.82□□□□□ -0.68
CCDC39-201ENST00000442201 C14orf37Q86TY3 774 aa10.82□□□□□ -0.68
CCDC39-201ENST00000442201 PROSER2Q86WR7 435 aaPredicted RBP10.82□□□□□ -0.68
CCDC39-201ENST00000442201 RBM33Q96EV2 1170 aaKnown RBP10.81□□□□□ -0.68
CCDC39-201ENST00000442201 GGNBP2Q9H3C7 697 aa10.81□□□□□ -0.68
CCDC39-201ENST00000442201 EDC4Q6P2E9 1401 aaKnown RBP10.81□□□□□ -0.68
CCDC39-201ENST00000442201 ANKARQ7Z5J8 1434 aa10.81□□□□□ -0.68
CCDC39-201ENST00000442201 CDC42BPGQ6DT37 1551 aa10.81□□□□□ -0.68
CCDC39-201ENST00000442201 ADGRL3Q9HAR2 1447 aa10.81□□□□□ -0.68
CCDC39-201ENST00000442201 NWD1Q149M9 1564 aa10.8□□□□□ -0.68
CCDC39-201ENST00000442201 TNNT2P45379 298 aaPredicted RBP10.8□□□□□ -0.68
CCDC39-201ENST00000442201 SUGP2Q8IX01 1082 aaKnown RBP eCLIP10.8□□□□□ -0.68
CCDC39-201ENST00000442201 ACEP12821 1306 aa10.8□□□□□ -0.68
CCDC39-201ENST00000442201 NKTRP30414 1462 aaKnown RBP10.8□□□□□ -0.68
CCDC39-201ENST00000442201 NGDNQ8NEJ9 315 aaKnown RBP10.78□□□□□ -0.68
CCDC39-201ENST00000442201 PMFBP1Q8TBY8 1022 aa10.78□□□□□ -0.68
CCDC39-201ENST00000442201 WDR43Q15061 677 aaKnown RBP eCLIP10.78□□□□□ -0.68
CCDC39-201ENST00000442201 PKNOX2Q96KN3 472 aa10.78□□□□□ -0.68
CCDC39-201ENST00000442201 TOPAZ1Q8N9V7 1692 aa10.77□□□□□ -0.69
CCDC39-201ENST00000442201 POLR3AO14802 1390 aaPredicted RBP10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms