RNA–Protein interactions for RNA: ENST00000441587.2

ALMS1-IT1-201, ALMS1 intronic transcript 1, humanhuman

TSL 1 (best) BASIC

Gene ALMS1-IT1, Length 2,107 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-IT1-201ENST00000441587 SIRT1Q96EB6 747 aa8.12□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 L3MBTL3Q96JM7 780 aaPredicted RBP8.12□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 MAFBQ9Y5Q3 323 aaPredicted RBP8.12□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 SOX11P35716 441 aa8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 PRPF38BQ5VTL8 546 aaKnown RBP8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 TMEM92Q6UXU6 159 aa8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 SULF1Q8IWU6 871 aa8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 NCLP19338 710 aaKnown RBP8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 CABLES1Q8TDN4 633 aa8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 OCEL1Q9H607 264 aa8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 RBM27Q9P2N5 1060 aaKnown RBP8.11□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 RSF1Q96T23 1441 aaPredicted RBP8.1□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 ZNF16P17020 682 aaPredicted RBP8.1□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 DNAJC14Q6Y2X3 702 aaPredicted RBP8.1□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 PRR7Q8TB68 274 aa8.1□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 BCL2L13Q9BXK5 485 aa8.1□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.09□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 TCF3P15923 654 aa8.09□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 SEMA3FQ13275 785 aa8.09□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 HMX1Q9NP08 348 aaPredicted RBP8.09□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 GPR37L1O60883 481 aa8.09□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 ZBTB3Q9H5J0 574 aa8.09□□□□□ -1.11
ALMS1-IT1-201ENST00000441587 RB1CC1Q8TDY2 1594 aa8.08□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 CANXP27824 592 aaKnown RBP8.08□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 TTC13Q8NBP0 860 aa8.08□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 DRC1Q96MC2 740 aa8.08□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 TRIM34Q9BYJ4 488 aa8.08□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 DDX11L8A8MPP1 907 aa8.07□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 IRX5P78411 483 aaPredicted RBP8.07□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 CTDSPL2Q05D32 466 aa8.07□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 TBC1D9Q6ZT07 1266 aa8.07□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 ARID4AP29374 1257 aaPredicted RBP8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 AAMPQ13685 434 aa8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 ELOAQ14241 798 aaKnown RBP8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 C6orf132Q5T0Z8 1188 aa8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PRDM16Q9HAZ2 1276 aa8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 RCCD1A6NED2 376 aa8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 TMEM164Q5U3C3 297 aa8.06□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 ATP9BO43861 1147 aa8.05□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 GIPC2Q8TF65 315 aa8.05□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 SLC34A2O95436 690 aa8.05□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 HELBQ8NG08 1087 aaPredicted RBP8.05□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 SREK1Q8WXA9 508 aaKnown RBP8.05□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PHLDB3Q6NSJ2 640 aa8.04□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 TEX2Q8IWB9 1127 aa8.04□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PTMSP20962 102 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PRSS12P56730 875 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 SETQ01105 290 aaPredicted RBP8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PIP4P2Q8N4L2 257 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 STK32AQ8WU08 396 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 TSC1Q92574 1164 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 JPH4Q96JJ6 628 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 C8orf37Q96NL8 207 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PLCD4Q9BRC7 762 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 MARSP56192 900 aaKnown RBP8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 KANK4Q5T7N3 995 aaPredicted RBP8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 PNMA1Q8ND90 353 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 ZMIZ1Q9ULJ6 1067 aa8.03□□□□□ -1.12
ALMS1-IT1-201ENST00000441587 KDM4AO75164 1064 aa8.02□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 NOVA2Q9UNW9 492 aaKnown RBP8.02□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 SMARCA5O60264 1052 aaPredicted RBP8.02□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 LRRN4Q8WUT4 740 aa8.02□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 CDCA7LQ96GN5 454 aa8.02□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 SOWAHDA6NJG2 315 aa8.01□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 SSFA2P28290 1259 aa8.01□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 EIF4G2P78344 907 aaKnown RBP eCLIP8.01□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 CLSPNQ9HAW4 1339 aa8.01□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 FDX1P10109 184 aa8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 PLCG2P16885 1265 aa8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 NOM1Q5C9Z4 860 aaKnown RBP8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 CHRDL2Q6WN34 429 aa8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 IER5LQ5T953 404 aa8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 BIN2Q9UBW5 565 aaPredicted RBP8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 CECR2Q9BXF3 1484 aa8□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 ZC3H6P61129 1189 aaKnown RBP7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 EPS8L1Q8TE68 723 aa7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 SPATA32Q96LK8 384 aa7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 PRDM10Q9NQV6 1147 aa7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 ANKRD33BA6NCL7 494 aa7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 RDH13Q8NBN7 331 aa7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 EYA1Q99502 592 aa7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 PPP1R1BQ9UD71 204 aaPredicted RBP7.99□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 MROH2BQ7Z745 1585 aa7.98□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 DNAJB2P25686 324 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 USP46P62068 366 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 MTMR2Q13614 643 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 ZDHHC16Q969W1 377 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 HOXA2O43364 376 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 SERPINB4P48594 390 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 FOSBP53539 338 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 ATN1P54259 1190 aaPredicted RBP7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 UBXN4Q92575 508 aa7.97□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 VAMP1P23763 118 aa7.96□□□□□ -1.13
ALMS1-IT1-201ENST00000441587 SF3A1Q15459 793 aaKnown RBP7.95□□□□□ -1.14
ALMS1-IT1-201ENST00000441587 NPAS4Q8IUM7 802 aa7.95□□□□□ -1.14
ALMS1-IT1-201ENST00000441587 PCDHGC3Q9UN70 934 aa7.95□□□□□ -1.14
ALMS1-IT1-201ENST00000441587 BAZ1AQ9NRL2 1556 aaPredicted RBP7.95□□□□□ -1.14
ALMS1-IT1-201ENST00000441587 USP17L3A6NCW0 530 aa7.94□□□□□ -1.14
ALMS1-IT1-201ENST00000441587 USP17L4A6NCW7 530 aa7.94□□□□□ -1.14
ALMS1-IT1-201ENST00000441587 FAM196BA6NMK8 535 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms