RNA–Protein interactions for RNA: ENST00000441089.1

PTPN4-206, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 671 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-206ENST00000441089 DISP1Q96F81 1524 aa8.3□□□□□ -1.08
PTPN4-206ENST00000441089 APLP1P51693 650 aa8.3□□□□□ -1.08
PTPN4-206ENST00000441089 FER1L4A9Z1Z3 1794 aa8.3□□□□□ -1.08
PTPN4-206ENST00000441089 PDIA6Q15084 440 aa8.29□□□□□ -1.08
PTPN4-206ENST00000441089 PACS2Q86VP3 889 aa8.29□□□□□ -1.08
PTPN4-206ENST00000441089 CDHR5Q9HBB8 845 aa8.29□□□□□ -1.08
PTPN4-206ENST00000441089 IGF1RP08069 1367 aa8.29□□□□□ -1.08
PTPN4-206ENST00000441089 FANCAO15360 1455 aa8.28□□□□□ -1.08
PTPN4-206ENST00000441089 PRSS12P56730 875 aa8.28□□□□□ -1.08
PTPN4-206ENST00000441089 IL21Q9HBE4 155 aa8.28□□□□□ -1.08
PTPN4-206ENST00000441089 ARHGEF40Q8TER5 1519 aa8.28□□□□□ -1.08
PTPN4-206ENST00000441089 PTPRTO14522 1441 aa8.28□□□□□ -1.08
PTPN4-206ENST00000441089 TTC37Q6PGP7 1564 aa8.27□□□□□ -1.09
PTPN4-206ENST00000441089 NEO1Q92859 1461 aa8.27□□□□□ -1.09
PTPN4-206ENST00000441089 RAPGEF3O95398 923 aa8.27□□□□□ -1.09
PTPN4-206ENST00000441089 KIF27Q86VH2 1401 aa8.27□□□□□ -1.09
PTPN4-206ENST00000441089 KIAA0556O60303 1618 aa8.26□□□□□ -1.09
PTPN4-206ENST00000441089 LTBP4Q8N2S1 1624 aa8.26□□□□□ -1.09
PTPN4-206ENST00000441089 UGGT2Q9NYU1 1516 aa8.26□□□□□ -1.09
PTPN4-206ENST00000441089 TATDN2Q93075 761 aa8.26□□□□□ -1.09
PTPN4-206ENST00000441089 EMID1Q96A84 441 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-206ENST00000441089 V9GY48 417 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-206ENST00000441089 MED1Q15648 1581 aaPredicted RBP8.26□□□□□ -1.09
PTPN4-206ENST00000441089 TRIM67Q6ZTA4 783 aa8.25□□□□□ -1.09
PTPN4-206ENST00000441089 RTN4Q9NQC3 1192 aaKnown RBP8.25□□□□□ -1.09
PTPN4-206ENST00000441089 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.25□□□□□ -1.09
PTPN4-206ENST00000441089 PNMA3Q9UL41 463 aa8.25□□□□□ -1.09
PTPN4-206ENST00000441089 FRMPD1Q5SYB0 1578 aa8.25□□□□□ -1.09
PTPN4-206ENST00000441089 ABCA9Q8IUA7 1624 aa8.25□□□□□ -1.09
PTPN4-206ENST00000441089 CARMIL1Q5VZK9 1371 aa8.24□□□□□ -1.09
PTPN4-206ENST00000441089 ZNF775Q96BV0 537 aaPredicted RBP8.24□□□□□ -1.09
PTPN4-206ENST00000441089 UHRF1BP1Q6BDS2 1440 aa8.23□□□□□ -1.09
PTPN4-206ENST00000441089 AKNAQ7Z591 1439 aa8.23□□□□□ -1.09
PTPN4-206ENST00000441089 UBAP1LF5GYI3 381 aa8.23□□□□□ -1.09
PTPN4-206ENST00000441089 ZNF787Q6DD87 383 aa8.23□□□□□ -1.09
PTPN4-206ENST00000441089 PDZRN3Q9UPQ7 1066 aa8.23□□□□□ -1.09
PTPN4-206ENST00000441089 RNF40O75150 1001 aa8.22□□□□□ -1.09
PTPN4-206ENST00000441089 NUDT18Q6ZVK8 323 aa8.22□□□□□ -1.09
PTPN4-206ENST00000441089 RICTORQ6R327 1708 aa8.22□□□□□ -1.09
PTPN4-206ENST00000441089 COPS2P61201 443 aa8.21□□□□□ -1.1
PTPN4-206ENST00000441089 ABCA8O94911 1581 aa8.21□□□□□ -1.1
PTPN4-206ENST00000441089 EFCAB5A4FU69 1503 aa8.2□□□□□ -1.1
PTPN4-206ENST00000441089 GRXCR2A6NFK2 248 aa8.2□□□□□ -1.1
PTPN4-206ENST00000441089 DENND4BO75064 1496 aaPredicted RBP8.19□□□□□ -1.1
PTPN4-206ENST00000441089 POTECB2RU33 542 aa8.19□□□□□ -1.1
PTPN4-206ENST00000441089 OSBPP22059 807 aa8.19□□□□□ -1.1
PTPN4-206ENST00000441089 FAM9AQ8IZU1 332 aaPredicted RBP8.19□□□□□ -1.1
PTPN4-206ENST00000441089 ZMYM4Q5VZL5 1548 aa8.19□□□□□ -1.1
PTPN4-206ENST00000441089 NBPF26B4DH59 902 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 MLECQ14165 292 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 SWT1Q5T5J6 900 aaKnown RBP8.18□□□□□ -1.1
PTPN4-206ENST00000441089 FHOD3Q2V2M9 1422 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 GOLGA3Q08378 1498 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 MAGI2Q86UL8 1455 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 ZFYVE16Q7Z3T8 1539 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 ARHGEF12Q9NZN5 1544 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 CFAP74Q9C0B2 1584 aa8.18□□□□□ -1.1
PTPN4-206ENST00000441089 SIGLEC1Q9BZZ2 1709 aa8.17□□□□□ -1.1
PTPN4-206ENST00000441089 TTC13Q8NBP0 860 aa8.17□□□□□ -1.1
PTPN4-206ENST00000441089 NPDC1Q9NQX5 325 aaPredicted RBP8.17□□□□□ -1.1
PTPN4-206ENST00000441089 BBXQ8WY36 941 aaPredicted RBP8.16□□□□□ -1.1
PTPN4-206ENST00000441089 SPDYE16A6NNV3 312 aaPredicted RBP8.15□□□□□ -1.1
PTPN4-206ENST00000441089 PADI6Q6TGC4 694 aa8.15□□□□□ -1.1
PTPN4-206ENST00000441089 SRCAPQ6ZRS2 3230 aa8.15□□□□□ -1.11
PTPN4-206ENST00000441089 TLL1O43897 1013 aa8.14□□□□□ -1.11
PTPN4-206ENST00000441089 HSPA1LP34931 641 aa8.14□□□□□ -1.11
PTPN4-206ENST00000441089 CEBPAP49715 358 aaPredicted RBP8.14□□□□□ -1.11
PTPN4-206ENST00000441089 CTTNBP2Q8WZ74 1663 aa8.14□□□□□ -1.11
PTPN4-206ENST00000441089 NCOA1Q15788 1441 aa8.13□□□□□ -1.11
PTPN4-206ENST00000441089 RNF223E7ERA6 249 aa8.13□□□□□ -1.11
PTPN4-206ENST00000441089 ZPR1O75312 459 aa8.13□□□□□ -1.11
PTPN4-206ENST00000441089 ATP10BO94823 1461 aa8.13□□□□□ -1.11
PTPN4-206ENST00000441089 TOM1O60784 492 aa8.12□□□□□ -1.11
PTPN4-206ENST00000441089 MYT1Q01538 1121 aa8.12□□□□□ -1.11
PTPN4-206ENST00000441089 RAPGEF2Q9Y4G8 1499 aa8.12□□□□□ -1.11
PTPN4-206ENST00000441089 PPEF1O14829 653 aaPredicted RBP8.11□□□□□ -1.11
PTPN4-206ENST00000441089 BLOC1S3Q6QNY0 202 aa8.11□□□□□ -1.11
PTPN4-206ENST00000441089 ARIH1Q9Y4X5 557 aaPredicted RBP8.11□□□□□ -1.11
PTPN4-206ENST00000441089 ATP10AO60312 1499 aa8.11□□□□□ -1.11
PTPN4-206ENST00000441089 C3P01024 1663 aa8.11□□□□□ -1.11
PTPN4-206ENST00000441089 HECW1Q76N89 1606 aa8.11□□□□□ -1.11
PTPN4-206ENST00000441089 ZNF335Q9H4Z2 1342 aaPredicted RBP8.1□□□□□ -1.11
PTPN4-206ENST00000441089 EYA1Q99502 592 aa8.1□□□□□ -1.11
PTPN4-206ENST00000441089 RBM27Q9P2N5 1060 aaKnown RBP8.1□□□□□ -1.11
PTPN4-206ENST00000441089 C9orf84Q5VXU9 1444 aa8.1□□□□□ -1.11
PTPN4-206ENST00000441089 TRAPPC8Q9Y2L5 1435 aa8.1□□□□□ -1.11
PTPN4-206ENST00000441089 PIP4K2BP78356 416 aa8.09□□□□□ -1.11
PTPN4-206ENST00000441089 E2F4Q16254 413 aa8.09□□□□□ -1.11
PTPN4-206ENST00000441089 LIAT1Q6ZQX7 453 aa8.09□□□□□ -1.11
PTPN4-206ENST00000441089 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.09□□□□□ -1.11
PTPN4-206ENST00000441089 CAMSAP1Q5T5Y3 1602 aa8.08□□□□□ -1.12
PTPN4-206ENST00000441089 ARID3CA6NKF2 412 aa8.08□□□□□ -1.12
PTPN4-206ENST00000441089 SLC19A1P41440 591 aa8.08□□□□□ -1.12
PTPN4-206ENST00000441089 TMUB1Q9BVT8 246 aa8.08□□□□□ -1.12
PTPN4-206ENST00000441089 SUPT6HQ7KZ85 1726 aaKnown RBP8.08□□□□□ -1.12
PTPN4-206ENST00000441089 LCE2AQ5TA79 106 aaPredicted RBP8.07□□□□□ -1.12
PTPN4-206ENST00000441089 SPRYD7Q5W111 196 aa8.07□□□□□ -1.12
PTPN4-206ENST00000441089 ESF1Q9H501 851 aaKnown RBP8.07□□□□□ -1.12
PTPN4-206ENST00000441089 GGCXP38435 758 aa8.06□□□□□ -1.12
PTPN4-206ENST00000441089 SLF2Q8IX21 1173 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms