RNA–Protein interactions for RNA: ENST00000435070.6

CPSF6-202, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF6, Length 6,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-202ENST00000435070 DDIT3P35638 169 aa9.24□□□□□ -0.93
CPSF6-202ENST00000435070 CADPSQ9ULU8 1353 aa9.24□□□□□ -0.93
CPSF6-202ENST00000435070 SYCE3A1L190 88 aa9.24□□□□□ -0.93
CPSF6-202ENST00000435070 ERBINQ96RT1 1412 aa9.23□□□□□ -0.93
CPSF6-202ENST00000435070 PKP1Q13835 747 aa9.23□□□□□ -0.93
CPSF6-202ENST00000435070 FOXD4L6Q3SYB3 417 aaPredicted RBP9.23□□□□□ -0.93
CPSF6-202ENST00000435070 FOXD4L3Q6VB84 417 aaPredicted RBP9.23□□□□□ -0.93
CPSF6-202ENST00000435070 CGNQ9P2M7 1197 aaKnown RBP9.23□□□□□ -0.93
CPSF6-202ENST00000435070 K7ELQ4 463 aaPredicted RBP9.23□□□□□ -0.93
CPSF6-202ENST00000435070 NPM1P06748 294 aaKnown RBP eCLIP9.23□□□□□ -0.93
CPSF6-202ENST00000435070 ATP2B3Q16720 1220 aa9.23□□□□□ -0.93
CPSF6-202ENST00000435070 RTEL1-TNFRSF6BF6WH68 1400 aa9.23□□□□□ -0.93
CPSF6-202ENST00000435070 KIF21AQ7Z4S6 1674 aa9.23□□□□□ -0.93
CPSF6-202ENST00000435070 ANKRD30AQ9BXX3 1397 aa9.22□□□□□ -0.93
CPSF6-202ENST00000435070 TULP1O00294 542 aaPredicted RBP9.22□□□□□ -0.93
CPSF6-202ENST00000435070 TSPY4P0CV99 314 aa9.22□□□□□ -0.93
CPSF6-202ENST00000435070 TSPY10P0CW01 314 aa9.22□□□□□ -0.93
CPSF6-202ENST00000435070 MVPQ14764 893 aaKnown RBP9.22□□□□□ -0.93
CPSF6-202ENST00000435070 DZIP1LQ8IYY4 767 aaKnown RBP9.22□□□□□ -0.93
CPSF6-202ENST00000435070 PTMSP20962 102 aa9.22□□□□□ -0.93
CPSF6-202ENST00000435070 PLCB2Q00722 1185 aa9.22□□□□□ -0.93
CPSF6-202ENST00000435070 AEBP2Q6ZN18 517 aaPredicted RBP9.22□□□□□ -0.93
CPSF6-202ENST00000435070 C14orf37Q86TY3 774 aa9.22□□□□□ -0.93
CPSF6-202ENST00000435070 SNX21Q969T3 373 aa9.21□□□□□ -0.93
CPSF6-202ENST00000435070 PDIA4P13667 645 aaKnown RBP9.21□□□□□ -0.93
CPSF6-202ENST00000435070 TCP11L2Q8N4U5 519 aa9.21□□□□□ -0.93
CPSF6-202ENST00000435070 INSRP06213 1382 aa9.21□□□□□ -0.94
CPSF6-202ENST00000435070 UTP14CQ5TAP6 766 aaKnown RBP9.21□□□□□ -0.94
CPSF6-202ENST00000435070 SMC4Q9NTJ3 1288 aa9.21□□□□□ -0.94
CPSF6-202ENST00000435070 TSR2Q969E8 191 aaKnown RBP9.21□□□□□ -0.94
CPSF6-202ENST00000435070 ZKSCAN2Q63HK3 967 aa9.21□□□□□ -0.94
CPSF6-202ENST00000435070 CCDC39Q9UFE4 941 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 ZNF771Q7L3S4 317 aaPredicted RBP9.2□□□□□ -0.94
CPSF6-202ENST00000435070 RBM25P49756 843 aaKnown RBP9.2□□□□□ -0.94
CPSF6-202ENST00000435070 ZNF710Q8N1W2 664 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 ZNF445P59923 1031 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 ANKRD45Q5TZF3 282 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 MAGI2Q86UL8 1455 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 KIAA2012Q0VF49 1180 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 HS1BP3Q53T59 392 aa9.2□□□□□ -0.94
CPSF6-202ENST00000435070 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.2□□□□□ -0.94
CPSF6-202ENST00000435070 PDLIM2Q96JY6 352 aa9.19□□□□□ -0.94
CPSF6-202ENST00000435070 KIF2CQ99661 725 aa9.19□□□□□ -0.94
CPSF6-202ENST00000435070 LMBRD1Q9NUN5 540 aa9.19□□□□□ -0.94
CPSF6-202ENST00000435070 NSFL1CQ9UNZ2 370 aaKnown RBP9.19□□□□□ -0.94
CPSF6-202ENST00000435070 COL17A1Q9UMD9 1497 aaPredicted RBP9.19□□□□□ -0.94
CPSF6-202ENST00000435070 HNRNPMP52272 730 aaKnown RBP eCLIP9.19□□□□□ -0.94
CPSF6-202ENST00000435070 TTC12Q9H892 705 aaPredicted RBP9.19□□□□□ -0.94
CPSF6-202ENST00000435070 POLA1P09884 1462 aaPredicted RBP9.19□□□□□ -0.94
CPSF6-202ENST00000435070 U2AF2P26368 475 aaKnown RBP eCLIP9.19□□□□□ -0.946e-8■■■■□ 26.1
CPSF6-202ENST00000435070 TMEM63CQ9P1W3 806 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 MYRIPQ8NFW9 859 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 VIRMAQ69YN4 1812 aaKnown RBP9.18□□□□□ -0.94
CPSF6-202ENST00000435070 CCDC144AA2RUR9 1427 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 PRAG1Q86YV5 1406 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 AK9Q5TCS8 1911 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 GPT2Q8TD30 523 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 TMEM51Q9NW97 253 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 CTTNBP2Q8WZ74 1663 aa9.18□□□□□ -0.94
CPSF6-202ENST00000435070 E9PCH4 1651 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 C1orf115Q9H7X2 142 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 PRG4Q92954 1404 aaPredicted RBP9.17□□□□□ -0.94
CPSF6-202ENST00000435070 ZGPATQ8N5A5 531 aaKnown RBP9.17□□□□□ -0.94
CPSF6-202ENST00000435070 GTPBP4Q9BZE4 634 aaKnown RBP9.17□□□□□ -0.94
CPSF6-202ENST00000435070 PDCL2Q8N4E4 241 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 NCOA3Q9Y6Q9 1424 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 KIF20AO95235 890 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 TRIM27P14373 513 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 KIF3AQ9Y496 699 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 NINLQ9Y2I6 1382 aa9.17□□□□□ -0.94
CPSF6-202ENST00000435070 TBC1D9Q6ZT07 1266 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 KIF16BQ96L93 1317 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 TMEM57Q8N5G2 664 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 FANCD2Q9BXW9 1451 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 ABCA10Q8WWZ4 1543 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 LETM1O95202 739 aaPredicted RBP9.16□□□□□ -0.94
CPSF6-202ENST00000435070 NOL8Q76FK4 1167 aaKnown RBP9.16□□□□□ -0.94
CPSF6-202ENST00000435070 BCL2L12Q9HB09 334 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 NESP48681 1621 aa9.16□□□□□ -0.94
CPSF6-202ENST00000435070 DNMT1P26358 1616 aaKnown RBP9.16□□□□□ -0.94
CPSF6-202ENST00000435070 EXOSC9Q06265 439 aaKnown RBP9.15□□□□□ -0.94
CPSF6-202ENST00000435070 HAP1P54257 671 aaPredicted RBP9.15□□□□□ -0.94
CPSF6-202ENST00000435070 NOLC1Q14978 699 aaKnown RBP eCLIP9.15□□□□□ -0.945e-6■□□□□ 8.1
CPSF6-202ENST00000435070 LRSAM1Q6UWE0 723 aa9.15□□□□□ -0.94
CPSF6-202ENST00000435070 CHD1LQ86WJ1 897 aa9.15□□□□□ -0.94
CPSF6-202ENST00000435070 CHMP4AQ9BY43 222 aa9.15□□□□□ -0.94
CPSF6-202ENST00000435070 SAMD9Q5K651 1589 aa9.15□□□□□ -0.94
CPSF6-202ENST00000435070 MCM5P33992 734 aa9.15□□□□□ -0.95
CPSF6-202ENST00000435070 NUCB2P80303 420 aa9.15□□□□□ -0.95
CPSF6-202ENST00000435070 USP25Q9UHP3 1055 aa9.15□□□□□ -0.95
CPSF6-202ENST00000435070 NOB1Q9ULX3 412 aaKnown RBP9.15□□□□□ -0.95
CPSF6-202ENST00000435070 SSH1Q8WYL5 1049 aa9.15□□□□□ -0.95
CPSF6-202ENST00000435070 GDPD2Q9HCC8 539 aa9.14□□□□□ -0.95
CPSF6-202ENST00000435070 DDX19BQ9UMR2 479 aa9.14□□□□□ -0.95
CPSF6-202ENST00000435070 RUNDC1Q96C34 613 aa9.14□□□□□ -0.95
CPSF6-202ENST00000435070 TRERF1Q96PN7 1200 aa9.14□□□□□ -0.95
CPSF6-202ENST00000435070 ARHGEF12Q9NZN5 1544 aa9.14□□□□□ -0.95
CPSF6-202ENST00000435070 U2AF1L5P0DN76 240 aaPredicted RBP9.14□□□□□ -0.95
CPSF6-202ENST00000435070 U2AF1Q01081 240 aaKnown RBP eCLIP9.14□□□□□ -0.956e-8■■■■■ 62.2
CPSF6-202ENST00000435070 MORC1Q86VD1 984 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms