RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 SF3B2Q13435 895 aaKnown RBP13.17□□□□□ -0.3
HDAC1-202ENST00000428704 DEFB132Q7Z7B7 95 aa13.17□□□□□ -0.3
HDAC1-202ENST00000428704 NOS1P29475 1434 aa13.16□□□□□ -0.3
HDAC1-202ENST00000428704 FNBP4Q8N3X1 1017 aaPredicted RBP13.16□□□□□ -0.3
HDAC1-202ENST00000428704 RRP7BPQ9NSQ0 103 aa13.16□□□□□ -0.3
HDAC1-202ENST00000428704 SSUH2Q9Y2M2 353 aa13.16□□□□□ -0.3
HDAC1-202ENST00000428704 PIK3R4Q99570 1358 aa13.16□□□□□ -0.3
HDAC1-202ENST00000428704 MST1RQ04912 1400 aa13.15□□□□□ -0.3
HDAC1-202ENST00000428704 YY1P25490 414 aa13.15□□□□□ -0.3
HDAC1-202ENST00000428704 ABCF1Q8NE71 845 aaKnown RBP eCLIP13.15□□□□□ -0.3
HDAC1-202ENST00000428704 AMOTL2Q9Y2J4 779 aa13.15□□□□□ -0.3
HDAC1-202ENST00000428704 NHSL1Q5SYE7 1610 aa13.14□□□□□ -0.31
HDAC1-202ENST00000428704 PSDA5PKW4 1024 aaPredicted RBP13.14□□□□□ -0.31
HDAC1-202ENST00000428704 PTCH1Q13635 1447 aa13.13□□□□□ -0.31
HDAC1-202ENST00000428704 ADAMTS13Q76LX8 1427 aa13.13□□□□□ -0.31
HDAC1-202ENST00000428704 LMTK2Q8IWU2 1503 aa13.13□□□□□ -0.31
HDAC1-202ENST00000428704 ANKRD30AQ9BXX3 1397 aa13.12□□□□□ -0.31
HDAC1-202ENST00000428704 CHGAP10645 457 aaKnown RBP13.12□□□□□ -0.31
HDAC1-202ENST00000428704 FAM50AQ14320 339 aaKnown RBP13.11□□□□□ -0.31
HDAC1-202ENST00000428704 PPARGC1BQ86YN6 1023 aaKnown RBP13.11□□□□□ -0.31
HDAC1-202ENST00000428704 GJD4Q96KN9 370 aaPredicted RBP13.11□□□□□ -0.31
HDAC1-202ENST00000428704 CHIC2Q9UKJ5 165 aa13.11□□□□□ -0.31
HDAC1-202ENST00000428704 AKT1S1Q96B36 256 aa13.1□□□□□ -0.31
HDAC1-202ENST00000428704 UNC13BO14795 1591 aa13.09□□□□□ -0.31
HDAC1-202ENST00000428704 PTPRUQ92729 1446 aa13.09□□□□□ -0.31
HDAC1-202ENST00000428704 TRPM2O94759 1503 aa13.08□□□□□ -0.31
HDAC1-202ENST00000428704 RRBP1Q9P2E9 1410 aaKnown RBP13.07□□□□□ -0.32
HDAC1-202ENST00000428704 ANKRD50Q9ULJ7 1429 aa13.06□□□□□ -0.32
HDAC1-202ENST00000428704 BCL9LQ86UU0 1499 aa13.06□□□□□ -0.32
HDAC1-202ENST00000428704 IFFO2Q5TF58 517 aa13.06□□□□□ -0.32
HDAC1-202ENST00000428704 ROCK1Q13464 1354 aa13.06□□□□□ -0.32
HDAC1-202ENST00000428704 SOS2Q07890 1332 aaPredicted RBP13.05□□□□□ -0.32
HDAC1-202ENST00000428704 GCC2Q8IWJ2 1684 aa13.05□□□□□ -0.32
HDAC1-202ENST00000428704 BAG6P46379 1132 aa13.04□□□□□ -0.32
HDAC1-202ENST00000428704 PROM2Q8N271 834 aa13.04□□□□□ -0.32
HDAC1-202ENST00000428704 ADGRL3Q9HAR2 1447 aa13.04□□□□□ -0.32
HDAC1-202ENST00000428704 C1orf167Q5SNV9 1468 aa13.04□□□□□ -0.32
HDAC1-202ENST00000428704 RPRD2Q5VT52 1461 aaKnown RBP13.04□□□□□ -0.32
HDAC1-202ENST00000428704 TMEM131LA2VDJ0 1609 aa13.03□□□□□ -0.32
HDAC1-202ENST00000428704 IQGAP3Q86VI3 1631 aa13.02□□□□□ -0.32
HDAC1-202ENST00000428704 R3HDM1Q15032 1099 aaKnown RBP13.02□□□□□ -0.33
HDAC1-202ENST00000428704 ORAI2Q96SN7 254 aa13.02□□□□□ -0.33
HDAC1-202ENST00000428704 RALGAPBQ86X10 1494 aa13.02□□□□□ -0.33
HDAC1-202ENST00000428704 SEPT12Q8IYM1 358 aa13.01□□□□□ -0.33
HDAC1-202ENST00000428704 MYOM2P54296 1465 aa13.01□□□□□ -0.33
HDAC1-202ENST00000428704 E9PCH4 1651 aa13.01□□□□□ -0.33
HDAC1-202ENST00000428704 UNC5CLQ8IV45 518 aa13□□□□□ -0.33
HDAC1-202ENST00000428704 MYO5BQ9ULV0 1848 aa12.99□□□□□ -0.33
HDAC1-202ENST00000428704 ZEB1P37275 1124 aaPredicted RBP12.99□□□□□ -0.33
HDAC1-202ENST00000428704 XRN1Q8IZH2 1706 aaKnown RBP12.99□□□□□ -0.33
HDAC1-202ENST00000428704 KRT27Q7Z3Y8 459 aa12.98□□□□□ -0.33
HDAC1-202ENST00000428704 GLI3P10071 1580 aa12.98□□□□□ -0.33
HDAC1-202ENST00000428704 SENP3-EIF4A1A0A087X0R7 540 aa12.97□□□□□ -0.33
HDAC1-202ENST00000428704 ITGAEP38570 1179 aa12.97□□□□□ -0.33
HDAC1-202ENST00000428704 COL22A1Q8NFW1 1626 aaPredicted RBP12.97□□□□□ -0.33
HDAC1-202ENST00000428704 METP08581 1390 aa12.96□□□□□ -0.33
HDAC1-202ENST00000428704 LAMC1P11047 1609 aa12.96□□□□□ -0.33
HDAC1-202ENST00000428704 EN1Q05925 392 aaPredicted RBP12.96□□□□□ -0.33
HDAC1-202ENST00000428704 REM2Q8IYK8 340 aaPredicted RBP12.96□□□□□ -0.33
HDAC1-202ENST00000428704 A0A0G2JS52 829 aa12.95□□□□□ -0.34
HDAC1-202ENST00000428704 MYT1Q01538 1121 aa12.95□□□□□ -0.34
HDAC1-202ENST00000428704 CCDC9Q9Y3X0 531 aaKnown RBP12.95□□□□□ -0.34
HDAC1-202ENST00000428704 SPHKAPQ2M3C7 1700 aa12.95□□□□□ -0.34
HDAC1-202ENST00000428704 NAIPQ13075 1403 aa12.95□□□□□ -0.34
HDAC1-202ENST00000428704 NPHP3Q7Z494 1330 aa12.94□□□□□ -0.34
HDAC1-202ENST00000428704 NALCNQ8IZF0 1738 aa12.93□□□□□ -0.34
HDAC1-202ENST00000428704 SLIT2O94813 1529 aa12.93□□□□□ -0.34
HDAC1-202ENST00000428704 XPCQ01831 940 aaPredicted RBP12.92□□□□□ -0.34
HDAC1-202ENST00000428704 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.92□□□□□ -0.34
HDAC1-202ENST00000428704 HFM1A2PYH4 1435 aa12.91□□□□□ -0.34
HDAC1-202ENST00000428704 VPS72Q15906 364 aa12.91□□□□□ -0.34
HDAC1-202ENST00000428704 ESCO1Q5FWF5 840 aa12.91□□□□□ -0.34
HDAC1-202ENST00000428704 ONECUT3O60422 494 aaPredicted RBP12.9□□□□□ -0.34
HDAC1-202ENST00000428704 ZNF326Q5BKZ1 582 aaKnown RBP12.9□□□□□ -0.34
HDAC1-202ENST00000428704 PPP1R1BQ9UD71 204 aaPredicted RBP12.9□□□□□ -0.34
HDAC1-202ENST00000428704 NRXN3Q9Y4C0 1643 aa12.9□□□□□ -0.34
HDAC1-202ENST00000428704 NUP155O75694 1391 aa12.9□□□□□ -0.34
HDAC1-202ENST00000428704 BRWD3Q6RI45 1802 aa12.9□□□□□ -0.34
HDAC1-202ENST00000428704 FOXO3O43524 673 aa12.89□□□□□ -0.35
HDAC1-202ENST00000428704 HAP1P54257 671 aaPredicted RBP12.88□□□□□ -0.35
HDAC1-202ENST00000428704 PXDNQ92626 1479 aa12.88□□□□□ -0.35
HDAC1-202ENST00000428704 MARF1Q9Y4F3 1742 aaKnown RBP12.88□□□□□ -0.35
HDAC1-202ENST00000428704 LRPPRCP42704 1394 aaKnown RBP12.87□□□□□ -0.35
HDAC1-202ENST00000428704 EZH2Q15910 746 aaKnown RBP12.87□□□□□ -0.35
HDAC1-202ENST00000428704 ZNF784Q8NCA9 323 aaPredicted RBP12.87□□□□□ -0.35
HDAC1-202ENST00000428704 SPDYE1Q8NFV5 336 aaPredicted RBP12.86□□□□□ -0.35
HDAC1-202ENST00000428704 ROBO2Q9HCK4 1378 aa12.85□□□□□ -0.35
HDAC1-202ENST00000428704 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
HDAC1-202ENST00000428704 DISP2A7MBM2 1401 aa12.85□□□□□ -0.35
HDAC1-202ENST00000428704 CLTCL1P53675 1640 aa12.84□□□□□ -0.35
HDAC1-202ENST00000428704 NINLQ9Y2I6 1382 aa12.84□□□□□ -0.35
HDAC1-202ENST00000428704 C1QTNF8P60827 252 aa12.84□□□□□ -0.35
HDAC1-202ENST00000428704 FAM182BQ5T319 152 aa12.84□□□□□ -0.35
HDAC1-202ENST00000428704 PLEKHG5O94827 1062 aa12.83□□□□□ -0.36
HDAC1-202ENST00000428704 SPON1Q9HCB6 807 aa12.83□□□□□ -0.36
HDAC1-202ENST00000428704 SPATA31A3Q5VYP0 1347 aa12.83□□□□□ -0.36
HDAC1-202ENST00000428704 USP32Q8NFA0 1604 aa12.82□□□□□ -0.36
HDAC1-202ENST00000428704 CAMKK2Q96RR4 588 aa12.81□□□□□ -0.36
HDAC1-202ENST00000428704 RGPD1P0DJD0 1748 aa12.81□□□□□ -0.36
HDAC1-202ENST00000428704 NUTM2FA1L443 756 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms