RNA–Protein interactions for RNA: ENST00000428313.5

C9orf3-206, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 2,288 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-206ENST00000428313 ZKSCAN5Q9Y2L8 839 aa20.11■□□□□ 0.81
C9orf3-206ENST00000428313 PCDHB15Q9Y5E8 787 aa20.11■□□□□ 0.81
C9orf3-206ENST00000428313 GTF2E1P29083 439 aaPredicted RBP20.1■□□□□ 0.81
C9orf3-206ENST00000428313 RBM25P49756 843 aaKnown RBP20.1■□□□□ 0.81
C9orf3-206ENST00000428313 GPATCH8Q9UKJ3 1502 aaKnown RBP20.1■□□□□ 0.81
C9orf3-206ENST00000428313 TMF1P82094 1093 aa20.09■□□□□ 0.81
C9orf3-206ENST00000428313 XPCQ01831 940 aaPredicted RBP20.09■□□□□ 0.81
C9orf3-206ENST00000428313 EIF2AK4Q9P2K8 1649 aaKnown RBP20.09■□□□□ 0.81
C9orf3-206ENST00000428313 LETM1O95202 739 aaPredicted RBP20.09■□□□□ 0.81
C9orf3-206ENST00000428313 MRC2Q9UBG0 1479 aa20.09■□□□□ 0.81
C9orf3-206ENST00000428313 IFT140Q96RY7 1462 aa20.08■□□□□ 0.8
C9orf3-206ENST00000428313 PPP4R3BQ5MIZ7 849 aa20.07■□□□□ 0.8
C9orf3-206ENST00000428313 STAC3Q96MF2 364 aa20.07■□□□□ 0.8
C9orf3-206ENST00000428313 NUP155O75694 1391 aa20.07■□□□□ 0.8
C9orf3-206ENST00000428313 PTPRGP23470 1445 aa20.07■□□□□ 0.8
C9orf3-206ENST00000428313 HSP90AB1P08238 724 aaKnown RBP20.06■□□□□ 0.8
C9orf3-206ENST00000428313 MAGI2Q86UL8 1455 aa20.06■□□□□ 0.8
C9orf3-206ENST00000428313 WDR7Q9Y4E6 1490 aa20.06■□□□□ 0.8
C9orf3-206ENST00000428313 CFDP1Q9UEE9 299 aaPredicted RBP20.05■□□□□ 0.8
C9orf3-206ENST00000428313 APAF1O14727 1248 aa20.05■□□□□ 0.8
C9orf3-206ENST00000428313 KNSTRNQ9Y448 316 aa20.04■□□□□ 0.8
C9orf3-206ENST00000428313 NPC1L1Q9UHC9 1359 aa20.04■□□□□ 0.8
C9orf3-206ENST00000428313 SYNMO15061 1565 aa20.03■□□□□ 0.8
C9orf3-206ENST00000428313 ASXL1Q8IXJ9 1541 aa20.03■□□□□ 0.8
C9orf3-206ENST00000428313 PDIA4P13667 645 aaKnown RBP20.03■□□□□ 0.8
C9orf3-206ENST00000428313 DDX49Q9Y6V7 483 aaKnown RBP20.03■□□□□ 0.8
C9orf3-206ENST00000428313 AMER1Q5JTC6 1135 aaPredicted RBP20.02■□□□□ 0.8
C9orf3-206ENST00000428313 TAF3Q5VWG9 929 aa20.02■□□□□ 0.8
C9orf3-206ENST00000428313 CCDC39Q9UFE4 941 aa20.02■□□□□ 0.8
C9orf3-206ENST00000428313 CCDC146Q8IYE0 955 aa20.02■□□□□ 0.8
C9orf3-206ENST00000428313 MYRIPQ8NFW9 859 aa20.01■□□□□ 0.79
C9orf3-206ENST00000428313 NBPF1Q3BBV0 1214 aa20.01■□□□□ 0.79
C9orf3-206ENST00000428313 PRG4Q92954 1404 aaPredicted RBP20.01■□□□□ 0.79
C9orf3-206ENST00000428313 ARID3AQ99856 593 aa20.01■□□□□ 0.79
C9orf3-206ENST00000428313 GRIN2AQ12879 1464 aa20■□□□□ 0.79
C9orf3-206ENST00000428313 NUP160Q12769 1436 aa20■□□□□ 0.79
C9orf3-206ENST00000428313 BCL11BQ9C0K0 894 aaPredicted RBP20■□□□□ 0.79
C9orf3-206ENST00000428313 RARSP54136 660 aaKnown RBP19.99■□□□□ 0.79
C9orf3-206ENST00000428313 NAP1L2Q9ULW6 460 aaPredicted RBP19.99■□□□□ 0.79
C9orf3-206ENST00000428313 RNF17Q9BXT8 1623 aaKnown RBP19.99■□□□□ 0.79
C9orf3-206ENST00000428313 DMRT2Q9Y5R5 561 aa19.98■□□□□ 0.79
C9orf3-206ENST00000428313 CDC42BPAQ5VT25 1732 aa19.98■□□□□ 0.79
C9orf3-206ENST00000428313 BAG4O95429 457 aaKnown RBP19.97■□□□□ 0.79
C9orf3-206ENST00000428313 RLBP1P12271 317 aa19.97■□□□□ 0.79
C9orf3-206ENST00000428313 GTF2F1P35269 517 aaKnown RBP eCLIP19.97■□□□□ 0.791e-6■■■■□ 26.4
C9orf3-206ENST00000428313 ZSCAN23Q3MJ62 389 aa19.97■□□□□ 0.79
C9orf3-206ENST00000428313 PRIMPOLQ96LW4 560 aa19.97■□□□□ 0.79
C9orf3-206ENST00000428313 RBSNQ9H1K0 784 aa19.97■□□□□ 0.79
C9orf3-206ENST00000428313 CCDC141Q6ZP82 1450 aa19.96■□□□□ 0.79
C9orf3-206ENST00000428313 IPO4Q8TEX9 1081 aaKnown RBP19.96■□□□□ 0.79
C9orf3-206ENST00000428313 ARHGEF5Q12774 1597 aa19.96■□□□□ 0.79
C9orf3-206ENST00000428313 SSFA2P28290 1259 aa19.96■□□□□ 0.79
C9orf3-206ENST00000428313 A2MP01023 1474 aa19.95■□□□□ 0.78
C9orf3-206ENST00000428313 K7ELQ4 463 aaPredicted RBP19.95■□□□□ 0.78
C9orf3-206ENST00000428313 MYO5CQ9NQX4 1742 aa19.95■□□□□ 0.78
C9orf3-206ENST00000428313 HMGN5P82970 282 aaKnown RBP19.95■□□□□ 0.78
C9orf3-206ENST00000428313 TMEM51Q9NW97 253 aa19.94■□□□□ 0.78
C9orf3-206ENST00000428313 HDAC1Q13547 482 aaPredicted RBP19.93■□□□□ 0.78
C9orf3-206ENST00000428313 C9orf84Q5VXU9 1444 aa19.93■□□□□ 0.78
C9orf3-206ENST00000428313 WWC1Q8IX03 1113 aa19.93■□□□□ 0.78
C9orf3-206ENST00000428313 ARID3CA6NKF2 412 aa19.92■□□□□ 0.78
C9orf3-206ENST00000428313 MVPQ14764 893 aaKnown RBP19.92■□□□□ 0.78
C9orf3-206ENST00000428313 KIAA2012Q0VF49 1180 aa19.92■□□□□ 0.78
C9orf3-206ENST00000428313 ZNF710Q8N1W2 664 aa19.92■□□□□ 0.78
C9orf3-206ENST00000428313 MAGI1Q96QZ7 1491 aaPredicted RBP19.91■□□□□ 0.78
C9orf3-206ENST00000428313 CAVIN1Q6NZI2 390 aaKnown RBP19.9■□□□□ 0.78
C9orf3-206ENST00000428313 KIF2CQ99661 725 aa19.9■□□□□ 0.78
C9orf3-206ENST00000428313 CARMIL2Q6F5E8 1435 aa19.9■□□□□ 0.78
C9orf3-206ENST00000428313 CBX1P83916 185 aa19.9■□□□□ 0.78
C9orf3-206ENST00000428313 MYOM1P52179 1685 aa19.89■□□□□ 0.77
C9orf3-206ENST00000428313 SYNJ2O15056 1496 aa19.89■□□□□ 0.77
C9orf3-206ENST00000428313 PRIM1P49642 420 aaKnown RBP19.88■□□□□ 0.77
C9orf3-206ENST00000428313 CDCA8Q53HL2 280 aa19.88■□□□□ 0.77
C9orf3-206ENST00000428313 LMBRD1Q9NUN5 540 aa19.88■□□□□ 0.77
C9orf3-206ENST00000428313 KANK1Q14678 1352 aa19.88■□□□□ 0.77
C9orf3-206ENST00000428313 TNNQ9UQP3 1299 aa19.88■□□□□ 0.77
C9orf3-206ENST00000428313 IQGAP1P46940 1657 aa19.88■□□□□ 0.77
C9orf3-206ENST00000428313 NUCB2P80303 420 aa19.87■□□□□ 0.77
C9orf3-206ENST00000428313 PLB1Q6P1J6 1458 aa19.87■□□□□ 0.77
C9orf3-206ENST00000428313 ATP2B3Q16720 1220 aa19.86■□□□□ 0.77
C9orf3-206ENST00000428313 LRSAM1Q6UWE0 723 aa19.86■□□□□ 0.77
C9orf3-206ENST00000428313 ABCA8O94911 1581 aa19.86■□□□□ 0.77
C9orf3-206ENST00000428313 TAF7LQ5H9L4 462 aa19.86■□□□□ 0.77
C9orf3-206ENST00000428313 GAS2L2Q8NHY3 880 aa19.86■□□□□ 0.77
C9orf3-206ENST00000428313 CD2BP2O95400 341 aaKnown RBP19.85■□□□□ 0.77
C9orf3-206ENST00000428313 CHMP4BQ9H444 224 aaKnown RBP19.85■□□□□ 0.77
C9orf3-206ENST00000428313 CFAP74Q9C0B2 1584 aa19.84■□□□□ 0.77
C9orf3-206ENST00000428313 KIF16BQ96L93 1317 aa19.84■□□□□ 0.77
C9orf3-206ENST00000428313 CYP2E1P05181 493 aaPredicted RBP19.84■□□□□ 0.77
C9orf3-206ENST00000428313 MCTP1Q6DN14 999 aa19.84■□□□□ 0.77
C9orf3-206ENST00000428313 WDR63Q8IWG1 891 aa19.84■□□□□ 0.77
C9orf3-206ENST00000428313 FOXD4L1Q9NU39 408 aa19.83■□□□□ 0.77
C9orf3-206ENST00000428313 IQSEC2Q5JU85 1478 aa19.83■□□□□ 0.77
C9orf3-206ENST00000428313 TSPY4P0CV99 314 aa19.83■□□□□ 0.76
C9orf3-206ENST00000428313 TSPY10P0CW01 314 aa19.83■□□□□ 0.76
C9orf3-206ENST00000428313 PHF23Q9BUL5 403 aaPredicted RBP19.83■□□□□ 0.76
C9orf3-206ENST00000428313 RSPH4AQ5TD94 716 aa19.82■□□□□ 0.76
C9orf3-206ENST00000428313 ZKSCAN2Q63HK3 967 aa19.82■□□□□ 0.76
C9orf3-206ENST00000428313 KIF3AQ9Y496 699 aa19.82■□□□□ 0.76
C9orf3-206ENST00000428313 POLR3AO14802 1390 aaPredicted RBP19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms