RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 NINLQ9Y2I6 1382 aa12.78□□□□□ -0.36
HMGB4-201ENST00000425537 YTHDC2Q9H6S0 1430 aaKnown RBP12.78□□□□□ -0.36
HMGB4-201ENST00000425537 ASXL1Q8IXJ9 1541 aa12.78□□□□□ -0.36
HMGB4-201ENST00000425537 DLC1Q96QB1 1528 aa12.78□□□□□ -0.36
HMGB4-201ENST00000425537 GTF3C3Q9Y5Q9 886 aa12.77□□□□□ -0.37
HMGB4-201ENST00000425537 NRXN3Q9Y4C0 1643 aa12.77□□□□□ -0.37
HMGB4-201ENST00000425537 STRCP1A6NGW2 1772 aa12.76□□□□□ -0.37
HMGB4-201ENST00000425537 FAM9BQ8IZU0 186 aa12.76□□□□□ -0.37
HMGB4-201ENST00000425537 POGKQ9P215 609 aa12.76□□□□□ -0.37
HMGB4-201ENST00000425537 SCAF1Q9H7N4 1312 aaKnown RBP12.76□□□□□ -0.37
HMGB4-201ENST00000425537 MED14O60244 1454 aa12.76□□□□□ -0.37
HMGB4-201ENST00000425537 LRPPRCP42704 1394 aaKnown RBP12.75□□□□□ -0.37
HMGB4-201ENST00000425537 INSRP06213 1382 aa12.74□□□□□ -0.37
HMGB4-201ENST00000425537 PLEKHG1Q9ULL1 1385 aa12.74□□□□□ -0.37
HMGB4-201ENST00000425537 ATAD2Q6PL18 1390 aa12.73□□□□□ -0.37
HMGB4-201ENST00000425537 CNGB1Q14028 1251 aaPredicted RBP12.73□□□□□ -0.37
HMGB4-201ENST00000425537 SIRT1Q96EB6 747 aa12.73□□□□□ -0.37
HMGB4-201ENST00000425537 RBM33Q96EV2 1170 aaKnown RBP12.73□□□□□ -0.37
HMGB4-201ENST00000425537 STK26Q9P289 416 aa12.73□□□□□ -0.37
HMGB4-201ENST00000425537 DMRT2Q9Y5R5 561 aa12.73□□□□□ -0.37
HMGB4-201ENST00000425537 ADAMTS13Q76LX8 1427 aa12.72□□□□□ -0.37
HMGB4-201ENST00000425537 ABCC11Q96J66 1382 aa12.72□□□□□ -0.37
HMGB4-201ENST00000425537 ZBED9Q6R2W3 1325 aa12.72□□□□□ -0.37
HMGB4-201ENST00000425537 USP32Q8NFA0 1604 aa12.71□□□□□ -0.37
HMGB4-201ENST00000425537 CCDC184Q52MB2 194 aa12.71□□□□□ -0.37
HMGB4-201ENST00000425537 CC2D1BQ5T0F9 858 aaKnown RBP12.71□□□□□ -0.37
HMGB4-201ENST00000425537 PNISRQ8TF01 805 aaKnown RBP12.71□□□□□ -0.37
HMGB4-201ENST00000425537 SETD1AO15047 1707 aaKnown RBP12.71□□□□□ -0.38
HMGB4-201ENST00000425537 KNDC1Q76NI1 1749 aa12.71□□□□□ -0.38
HMGB4-201ENST00000425537 LTBP4Q8N2S1 1624 aa12.7□□□□□ -0.38
HMGB4-201ENST00000425537 AMER1Q5JTC6 1135 aaPredicted RBP12.7□□□□□ -0.38
HMGB4-201ENST00000425537 PRAM1Q96QH2 718 aa12.7□□□□□ -0.38
HMGB4-201ENST00000425537 FAM135BQ49AJ0 1406 aa12.7□□□□□ -0.38
HMGB4-201ENST00000425537 NSD2O96028 1365 aa12.69□□□□□ -0.38
HMGB4-201ENST00000425537 METP08581 1390 aa12.69□□□□□ -0.38
HMGB4-201ENST00000425537 TULP4Q9NRJ4 1543 aa12.69□□□□□ -0.38
HMGB4-201ENST00000425537 NEFLP07196 543 aa12.69□□□□□ -0.38
HMGB4-201ENST00000425537 PTPRUQ92729 1446 aa12.69□□□□□ -0.38
HMGB4-201ENST00000425537 ANKRD36BQ8N2N9 1353 aa12.69□□□□□ -0.38
HMGB4-201ENST00000425537 CGNL1Q0VF96 1302 aa12.68□□□□□ -0.38
HMGB4-201ENST00000425537 SRPK2P78362 688 aaKnown RBP12.68□□□□□ -0.38
HMGB4-201ENST00000425537 TERF2IPQ9NYB0 399 aa12.68□□□□□ -0.38
HMGB4-201ENST00000425537 TECPR2O15040 1411 aa12.68□□□□□ -0.38
HMGB4-201ENST00000425537 DIP2AQ14689 1571 aa12.68□□□□□ -0.38
HMGB4-201ENST00000425537 CPS1P31327 1500 aa12.67□□□□□ -0.38
HMGB4-201ENST00000425537 CHD2O14647 1828 aaKnown RBP12.67□□□□□ -0.38
HMGB4-201ENST00000425537 MINK1Q8N4C8 1332 aaPredicted RBP12.65□□□□□ -0.38
HMGB4-201ENST00000425537 NWD1Q149M9 1564 aa12.65□□□□□ -0.38
HMGB4-201ENST00000425537 XIRP1Q702N8 1843 aaKnown RBP12.65□□□□□ -0.38
HMGB4-201ENST00000425537 NSD3Q9BZ95 1437 aa12.65□□□□□ -0.38
HMGB4-201ENST00000425537 KCNA6P17658 529 aa12.65□□□□□ -0.38
HMGB4-201ENST00000425537 PPP2R1AP30153 589 aa12.65□□□□□ -0.38
HMGB4-201ENST00000425537 HDGFL2Q7Z4V5 671 aaPredicted RBP12.65□□□□□ -0.38
HMGB4-201ENST00000425537 SAFB2Q14151 953 aaKnown RBP eCLIP12.64□□□□□ -0.39
HMGB4-201ENST00000425537 WDR43Q15061 677 aaKnown RBP eCLIP12.64□□□□□ -0.39
HMGB4-201ENST00000425537 SLC12A5Q9H2X9 1139 aa12.64□□□□□ -0.39
HMGB4-201ENST00000425537 TBX22Q9Y458 520 aa12.64□□□□□ -0.39
HMGB4-201ENST00000425537 XRN1Q8IZH2 1706 aaKnown RBP12.64□□□□□ -0.39
HMGB4-201ENST00000425537 LRRC7Q96NW7 1537 aa12.63□□□□□ -0.39
HMGB4-201ENST00000425537 MORC1Q86VD1 984 aa12.63□□□□□ -0.39
HMGB4-201ENST00000425537 CERKQ8TCT0 537 aa12.63□□□□□ -0.39
HMGB4-201ENST00000425537 CARD14Q9BXL6 1004 aa12.63□□□□□ -0.39
HMGB4-201ENST00000425537 AMOTL2Q9Y2J4 779 aa12.63□□□□□ -0.39
HMGB4-201ENST00000425537 PROSER2Q86WR7 435 aaPredicted RBP12.62□□□□□ -0.39
HMGB4-201ENST00000425537 CDK19Q9BWU1 502 aa12.62□□□□□ -0.39
HMGB4-201ENST00000425537 CABP2Q9NPB3 220 aa12.62□□□□□ -0.39
HMGB4-201ENST00000425537 ATP7BP35670 1465 aa12.61□□□□□ -0.39
HMGB4-201ENST00000425537 PIK3R4Q99570 1358 aa12.61□□□□□ -0.39
HMGB4-201ENST00000425537 PDE3BQ13370 1112 aa12.61□□□□□ -0.39
HMGB4-201ENST00000425537 CFAP53Q96M91 514 aa12.61□□□□□ -0.39
HMGB4-201ENST00000425537 TMEM94Q12767 1356 aa12.6□□□□□ -0.39
HMGB4-201ENST00000425537 PELP1Q8IZL8 1130 aaKnown RBP12.6□□□□□ -0.39
HMGB4-201ENST00000425537 NGEFQ8N5V2 710 aa12.6□□□□□ -0.39
HMGB4-201ENST00000425537 ROBO2Q9HCK4 1378 aa12.59□□□□□ -0.39
HMGB4-201ENST00000425537 WASLO00401 505 aaPredicted RBP12.59□□□□□ -0.39
HMGB4-201ENST00000425537 C14orf37Q86TY3 774 aa12.59□□□□□ -0.39
HMGB4-201ENST00000425537 BLMP54132 1417 aaPredicted RBP12.59□□□□□ -0.39
HMGB4-201ENST00000425537 ADGRB2O60241 1585 aa12.59□□□□□ -0.39
HMGB4-201ENST00000425537 NKTRP30414 1462 aaKnown RBP12.59□□□□□ -0.39
HMGB4-201ENST00000425537 POLR3AO14802 1390 aaPredicted RBP12.58□□□□□ -0.4
HMGB4-201ENST00000425537 PLEKHH1Q9ULM0 1364 aa12.58□□□□□ -0.4
HMGB4-201ENST00000425537 WAPLQ7Z5K2 1190 aa12.58□□□□□ -0.4
HMGB4-201ENST00000425537 SMG6Q86US8 1419 aaKnown RBP12.58□□□□□ -0.4
HMGB4-201ENST00000425537 NALCNQ8IZF0 1738 aa12.58□□□□□ -0.4
HMGB4-201ENST00000425537 A0A1W2PP64 1363 aa12.57□□□□□ -0.4
HMGB4-201ENST00000425537 ANKRD26Q9UPS8 1709 aa12.57□□□□□ -0.4
HMGB4-201ENST00000425537 PTCH1Q13635 1447 aa12.57□□□□□ -0.4
HMGB4-201ENST00000425537 ERICH6BQ5W0A0 696 aa12.56□□□□□ -0.4
HMGB4-201ENST00000425537 UBAP1LF5GYI3 381 aa12.55□□□□□ -0.4
HMGB4-201ENST00000425537 PIP4K2BP78356 416 aa12.55□□□□□ -0.4
HMGB4-201ENST00000425537 ZNF692Q9BU19 519 aaPredicted RBP12.55□□□□□ -0.4
HMGB4-201ENST00000425537 NUDCQ9Y266 331 aa12.55□□□□□ -0.4
HMGB4-201ENST00000425537 KIF20BQ96Q89 1820 aa12.54□□□□□ -0.4
HMGB4-201ENST00000425537 CABP1Q9NZU7 370 aa12.54□□□□□ -0.4
HMGB4-201ENST00000425537 CCDC61Q9Y6R9 512 aa12.54□□□□□ -0.4
HMGB4-201ENST00000425537 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.54□□□□□ -0.4
HMGB4-201ENST00000425537 EDC4Q6P2E9 1401 aaKnown RBP12.54□□□□□ -0.4
HMGB4-201ENST00000425537 PPIP5K1Q6PFW1 1433 aa12.54□□□□□ -0.4
HMGB4-201ENST00000425537 CDC42BPGQ6DT37 1551 aa12.53□□□□□ -0.4
HMGB4-201ENST00000425537 NUDT16Q96DE0 195 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms