RNA–Protein interactions for RNA: ENST00000424011.6

CMTM3-202, Transcript of CKLF like MARVEL transmembrane domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CMTM3, Length 2,330 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3-202ENST00000424011 SENP3Q9H4L4 574 aaPredicted RBP22.12■■□□□ 1.13
CMTM3-202ENST00000424011 SMG6Q86US8 1419 aaKnown RBP22.11■■□□□ 1.13
CMTM3-202ENST00000424011 RIMS1Q86UR5 1692 aaKnown RBP22.11■■□□□ 1.13
CMTM3-202ENST00000424011 STK26Q9P289 416 aa22.11■■□□□ 1.13
CMTM3-202ENST00000424011 CARD14Q9BXL6 1004 aa22.1■■□□□ 1.13
CMTM3-202ENST00000424011 PTPRMP28827 1452 aa22.09■■□□□ 1.13
CMTM3-202ENST00000424011 MSH5O43196 834 aa22.09■■□□□ 1.13
CMTM3-202ENST00000424011 NINLQ9Y2I6 1382 aa22.08■■□□□ 1.13
CMTM3-202ENST00000424011 TULP4Q9NRJ4 1543 aa22.08■■□□□ 1.13
CMTM3-202ENST00000424011 POGKQ9P215 609 aa22.08■■□□□ 1.12
CMTM3-202ENST00000424011 NUDCQ9Y266 331 aa22.07■■□□□ 1.12
CMTM3-202ENST00000424011 PRAM1Q96QH2 718 aa22.06■■□□□ 1.12
CMTM3-202ENST00000424011 SLC12A5Q9H2X9 1139 aa22.06■■□□□ 1.12
CMTM3-202ENST00000424011 THEMISQ8N1K5 641 aaPredicted RBP22.06■■□□□ 1.12
CMTM3-202ENST00000424011 ERICH6BQ5W0A0 696 aa22.05■■□□□ 1.12
CMTM3-202ENST00000424011 DLC1Q96QB1 1528 aa22.04■■□□□ 1.12
CMTM3-202ENST00000424011 BLMP54132 1417 aaPredicted RBP22.04■■□□□ 1.12
CMTM3-202ENST00000424011 NSD3Q9BZ95 1437 aa22.04■■□□□ 1.12
CMTM3-202ENST00000424011 LTKP29376 864 aa22.04■■□□□ 1.12
CMTM3-202ENST00000424011 ATAD2Q6PL18 1390 aa22.03■■□□□ 1.12
CMTM3-202ENST00000424011 ANKRD36BQ8N2N9 1353 aa22.03■■□□□ 1.12
CMTM3-202ENST00000424011 SAFB2Q14151 953 aaKnown RBP eCLIP22.03■■□□□ 1.12
CMTM3-202ENST00000424011 WDR43Q15061 677 aaKnown RBP eCLIP22.02■■□□□ 1.12
CMTM3-202ENST00000424011 TXNDC2Q86VQ3 553 aa22.02■■□□□ 1.12
CMTM3-202ENST00000424011 SLIT1O75093 1534 aa22.02■■□□□ 1.12
CMTM3-202ENST00000424011 ARHGAP23Q9P227 1491 aa22.02■■□□□ 1.12
CMTM3-202ENST00000424011 EID1Q9Y6B2 187 aa22.02■■□□□ 1.12
CMTM3-202ENST00000424011 NRXN3Q9Y4C0 1643 aa22.02■■□□□ 1.12
CMTM3-202ENST00000424011 SRPK2P78362 688 aaKnown RBP22.01■■□□□ 1.11
CMTM3-202ENST00000424011 PDE3BQ13370 1112 aa22.01■■□□□ 1.11
CMTM3-202ENST00000424011 CGNL1Q0VF96 1302 aa22.01■■□□□ 1.11
CMTM3-202ENST00000424011 USP32Q8NFA0 1604 aa22.01■■□□□ 1.11
CMTM3-202ENST00000424011 ABCC11Q96J66 1382 aa22.01■■□□□ 1.11
CMTM3-202ENST00000424011 CABP2Q9NPB3 220 aa22.01■■□□□ 1.11
CMTM3-202ENST00000424011 PLEKHG1Q9ULL1 1385 aa21.99■■□□□ 1.11
CMTM3-202ENST00000424011 SETD1AO15047 1707 aaKnown RBP21.99■■□□□ 1.11
CMTM3-202ENST00000424011 NSD2O96028 1365 aa21.99■■□□□ 1.11
CMTM3-202ENST00000424011 MINK1Q8N4C8 1332 aaPredicted RBP21.98■■□□□ 1.11
CMTM3-202ENST00000424011 PPP4R2Q9NY27 417 aa21.98■■□□□ 1.11
CMTM3-202ENST00000424011 CEP170BQ9Y4F5 1589 aaPredicted RBP21.98■■□□□ 1.11
CMTM3-202ENST00000424011 MORC1Q86VD1 984 aa21.97■■□□□ 1.11
CMTM3-202ENST00000424011 FANCIQ9NVI1 1328 aa21.97■■□□□ 1.11
CMTM3-202ENST00000424011 METP08581 1390 aa21.97■■□□□ 1.11
CMTM3-202ENST00000424011 ADAMTS8Q9UP79 889 aa21.96■■□□□ 1.11
CMTM3-202ENST00000424011 SETD1BQ9UPS6 1966 aaKnown RBP21.95■■□□□ 1.1
CMTM3-202ENST00000424011 ADAMTS13Q76LX8 1427 aa21.95■■□□□ 1.1
CMTM3-202ENST00000424011 TERF2IPQ9NYB0 399 aa21.95■■□□□ 1.1
CMTM3-202ENST00000424011 RNF123Q5XPI4 1314 aa21.95■■□□□ 1.1
CMTM3-202ENST00000424011 SIRT1Q96EB6 747 aa21.95■■□□□ 1.1
CMTM3-202ENST00000424011 SALL2Q9Y467 1007 aaPredicted RBP21.95■■□□□ 1.1
CMTM3-202ENST00000424011 CDK19Q9BWU1 502 aa21.93■■□□□ 1.1
CMTM3-202ENST00000424011 POLR3AO14802 1390 aaPredicted RBP21.93■■□□□ 1.1
CMTM3-202ENST00000424011 FAM135BQ49AJ0 1406 aa21.91■■□□□ 1.1
CMTM3-202ENST00000424011 MED14O60244 1454 aa21.91■■□□□ 1.1
CMTM3-202ENST00000424011 TECPR2O15040 1411 aa21.91■■□□□ 1.1
CMTM3-202ENST00000424011 A0A1W2PP64 1363 aa21.9■■□□□ 1.1
CMTM3-202ENST00000424011 ZNF142P52746 1687 aaPredicted RBP21.89■■□□□ 1.1
CMTM3-202ENST00000424011 HDGFL2Q7Z4V5 671 aaPredicted RBP21.89■■□□□ 1.1
CMTM3-202ENST00000424011 WAPLQ7Z5K2 1190 aa21.89■■□□□ 1.09
CMTM3-202ENST00000424011 SLC26A8Q96RN1 970 aa21.89■■□□□ 1.09
CMTM3-202ENST00000424011 TBX22Q9Y458 520 aa21.89■■□□□ 1.09
CMTM3-202ENST00000424011 KNDC1Q76NI1 1749 aa21.87■■□□□ 1.09
CMTM3-202ENST00000424011 B4GALNT3Q6L9W6 998 aa21.86■■□□□ 1.09
CMTM3-202ENST00000424011 PLEKHH1Q9ULM0 1364 aa21.86■■□□□ 1.09
CMTM3-202ENST00000424011 ANKLE2Q86XL3 938 aa21.86■■□□□ 1.09
CMTM3-202ENST00000424011 NGEFQ8N5V2 710 aa21.85■■□□□ 1.09
CMTM3-202ENST00000424011 CFAP53Q96M91 514 aa21.85■■□□□ 1.09
CMTM3-202ENST00000424011 CPS1P31327 1500 aa21.85■■□□□ 1.09
CMTM3-202ENST00000424011 CD163L1Q9NR16 1453 aa21.83■■□□□ 1.09
CMTM3-202ENST00000424011 WASLO00401 505 aaPredicted RBP21.83■■□□□ 1.09
CMTM3-202ENST00000424011 CDCA7LQ96GN5 454 aa21.83■■□□□ 1.09
CMTM3-202ENST00000424011 DEKP35659 375 aaKnown RBP21.83■■□□□ 1.08
CMTM3-202ENST00000424011 CABP1Q9NZU7 370 aa21.83■■□□□ 1.08
CMTM3-202ENST00000424011 ATP7BP35670 1465 aa21.82■■□□□ 1.08
CMTM3-202ENST00000424011 TNNT2P45379 298 aaPredicted RBP21.81■■□□□ 1.08
CMTM3-202ENST00000424011 DIP2AQ14689 1571 aa21.8■■□□□ 1.08
CMTM3-202ENST00000424011 PTPRUQ92729 1446 aa21.8■■□□□ 1.08
CMTM3-202ENST00000424011 MTHFSP49914 203 aa21.79■■□□□ 1.08
CMTM3-202ENST00000424011 ROBO2Q9HCK4 1378 aa21.79■■□□□ 1.08
CMTM3-202ENST00000424011 RCAN3Q9UKA8 241 aa21.78■■□□□ 1.08
CMTM3-202ENST00000424011 AMOTL2Q9Y2J4 779 aa21.78■■□□□ 1.08
CMTM3-202ENST00000424011 ANO8Q9HCE9 1232 aaPredicted RBP21.78■■□□□ 1.08
CMTM3-202ENST00000424011 KDM4FA0A1W2PPD8 638 aa21.77■■□□□ 1.08
CMTM3-202ENST00000424011 FYB1O15117 783 aa21.77■■□□□ 1.08
CMTM3-202ENST00000424011 RRP1P56182 461 aaKnown RBP21.76■■□□□ 1.07
CMTM3-202ENST00000424011 ZNF521Q96K83 1311 aa21.76■■□□□ 1.07
CMTM3-202ENST00000424011 CCDC146Q8IYE0 955 aa21.75■■□□□ 1.07
CMTM3-202ENST00000424011 GGNBP2Q9H3C7 697 aa21.75■■□□□ 1.07
CMTM3-202ENST00000424011 PIK3R4Q99570 1358 aa21.75■■□□□ 1.07
CMTM3-202ENST00000424011 GOLGA2Q08379 1002 aa21.74■■□□□ 1.07
CMTM3-202ENST00000424011 CCDC61Q9Y6R9 512 aa21.74■■□□□ 1.07
CMTM3-202ENST00000424011 PPIP5K1Q6PFW1 1433 aa21.74■■□□□ 1.07
CMTM3-202ENST00000424011 APAF1O14727 1248 aa21.73■■□□□ 1.07
CMTM3-202ENST00000424011 NUDT16Q96DE0 195 aaKnown RBP21.73■■□□□ 1.07
CMTM3-202ENST00000424011 ANKRD26Q9UPS8 1709 aa21.73■■□□□ 1.07
CMTM3-202ENST00000424011 CPSF1Q10570 1443 aaKnown RBP21.72■■□□□ 1.07
CMTM3-202ENST00000424011 SHPRHQ149N8 1683 aa21.71■■□□□ 1.07
CMTM3-202ENST00000424011 PTCH1Q13635 1447 aa21.71■■□□□ 1.07
CMTM3-202ENST00000424011 ADGRB2O60241 1585 aa21.71■■□□□ 1.07
CMTM3-202ENST00000424011 EDC4Q6P2E9 1401 aaKnown RBP21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms