RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	WAPL	Q7Z5K2	1190 aa		18.64	■□□□□ 0.57
SF1-206	ENST00000413725	PLEKHH1	Q9ULM0	1364 aa		18.63	■□□□□ 0.57
SF1-206	ENST00000413725	ADGRB2	O60241	1585 aa		18.62	■□□□□ 0.57
SF1-206	ENST00000413725	CDC42BPG	Q6DT37	1551 aa		18.61	■□□□□ 0.57
SF1-206	ENST00000413725	DCC	P43146	1447 aa		18.61	■□□□□ 0.57
SF1-206	ENST00000413725	ZEB1	P37275	1124 aa	Predicted RBP	18.61	■□□□□ 0.57
SF1-206	ENST00000413725	SAFB2	Q14151	953 aa	Known RBP eCLIP	18.61	■□□□□ 0.57
SF1-206	ENST00000413725	CENPJ	Q9HC77	1338 aa	Predicted RBP	18.6	■□□□□ 0.57
SF1-206	ENST00000413725	C19orf44	Q9H6X5	657 aa		18.6	■□□□□ 0.57
SF1-206	ENST00000413725	FMN2	Q9NZ56	1722 aa		18.59	■□□□□ 0.57
SF1-206	ENST00000413725	USP47	Q96K76	1375 aa		18.58	■□□□□ 0.57
SF1-206	ENST00000413725	ATF3	P18847	181 aa		18.57	■□□□□ 0.56
SF1-206	ENST00000413725	RGPD8	O14715	1765 aa	Predicted RBP	18.57	■□□□□ 0.56
SF1-206	ENST00000413725	MINK1	Q8N4C8	1332 aa	Predicted RBP	18.56	■□□□□ 0.56
SF1-206	ENST00000413725	CADPS2	Q86UW7	1296 aa		18.56	■□□□□ 0.56
SF1-206	ENST00000413725	TOM1	O60784	492 aa		18.55	■□□□□ 0.56
SF1-206	ENST00000413725	ITSN1	Q15811	1721 aa		18.54	■□□□□ 0.56
SF1-206	ENST00000413725	UBAP1L	F5GYI3	381 aa		18.53	■□□□□ 0.56
SF1-206	ENST00000413725	SBNO2	Q9Y2G9	1366 aa		18.53	■□□□□ 0.56
SF1-206	ENST00000413725	FBXO41	Q8TF61	875 aa		18.52	■□□□□ 0.56
SF1-206	ENST00000413725	HIRIP3	Q9BW71	556 aa	Predicted RBP	18.52	■□□□□ 0.56
SF1-206	ENST00000413725	EIF4G2	P78344	907 aa	Known RBP eCLIP	18.51	■□□□□ 0.55	1e-7	■■□□□ 12.5
SF1-206	ENST00000413725	MST1R	Q04912	1400 aa		18.5	■□□□□ 0.55
SF1-206	ENST00000413725	ST20-MTHFS	A0A0A6YYL1	179 aa		18.5	■□□□□ 0.55
SF1-206	ENST00000413725	TULP4	Q9NRJ4	1543 aa		18.49	■□□□□ 0.55
SF1-206	ENST00000413725	WASL	O00401	505 aa	Predicted RBP	18.49	■□□□□ 0.55
SF1-206	ENST00000413725	SLC24A1	O60721	1099 aa		18.49	■□□□□ 0.55
SF1-206	ENST00000413725	ROBO1	Q9Y6N7	1651 aa		18.49	■□□□□ 0.55
SF1-206	ENST00000413725	USP32	Q8NFA0	1604 aa		18.49	■□□□□ 0.55
SF1-206	ENST00000413725	EVC2	Q86UK5	1308 aa		18.49	■□□□□ 0.55
SF1-206	ENST00000413725	SLAIN2	Q9P270	581 aa		18.48	■□□□□ 0.55
SF1-206	ENST00000413725	ANKAR	Q7Z5J8	1434 aa		18.48	■□□□□ 0.55
SF1-206	ENST00000413725	KIF1A	Q12756	1690 aa		18.47	■□□□□ 0.55
SF1-206	ENST00000413725	C1orf167	Q5SNV9	1468 aa		18.46	■□□□□ 0.55
SF1-206	ENST00000413725	CDK19	Q9BWU1	502 aa		18.46	■□□□□ 0.55
SF1-206	ENST00000413725	TOPAZ1	Q8N9V7	1692 aa		18.46	■□□□□ 0.55
SF1-206	ENST00000413725	SCAF1	Q9H7N4	1312 aa	Known RBP	18.46	■□□□□ 0.55
SF1-206	ENST00000413725	HSPA5	P11021	654 aa	Known RBP	18.45	■□□□□ 0.54
SF1-206	ENST00000413725	TESK2	Q96S53	571 aa		18.45	■□□□□ 0.54
SF1-206	ENST00000413725	NUTM2F	A1L443	756 aa		18.44	■□□□□ 0.54
SF1-206	ENST00000413725	PIP4K2B	P78356	416 aa		18.44	■□□□□ 0.54
SF1-206	ENST00000413725	SRPK2	P78362	688 aa	Known RBP	18.44	■□□□□ 0.54
SF1-206	ENST00000413725	ATP7B	P35670	1465 aa		18.43	■□□□□ 0.54
SF1-206	ENST00000413725	TMF1	P82094	1093 aa		18.42	■□□□□ 0.54
SF1-206	ENST00000413725	ILDR1	Q86SU0	546 aa	Predicted RBP	18.42	■□□□□ 0.54
SF1-206	ENST00000413725	NHSL1	Q5SYE7	1610 aa		18.41	■□□□□ 0.54
SF1-206	ENST00000413725	ESCO1	Q5FWF5	840 aa		18.4	■□□□□ 0.54
SF1-206	ENST00000413725	NUDT16	Q96DE0	195 aa	Known RBP	18.4	■□□□□ 0.54
SF1-206	ENST00000413725	CABP2	Q9NPB3	220 aa		18.4	■□□□□ 0.54
SF1-206	ENST00000413725	ATAD2	Q6PL18	1390 aa		18.4	■□□□□ 0.54
SF1-206	ENST00000413725	PHLPP1	O60346	1717 aa		18.4	■□□□□ 0.54
SF1-206	ENST00000413725	CDCA8	Q53HL2	280 aa		18.39	■□□□□ 0.53
SF1-206	ENST00000413725	PRR36	Q9H6K5	1346 aa		18.39	■□□□□ 0.53
SF1-206	ENST00000413725	BRINP3	Q76B58	766 aa		18.38	■□□□□ 0.53
SF1-206	ENST00000413725	DISP3	Q9P2K9	1392 aa		18.38	■□□□□ 0.53
SF1-206	ENST00000413725	AHDC1	Q5TGY3	1603 aa	Predicted RBP	18.38	■□□□□ 0.53
SF1-206	ENST00000413725	PUS7	Q96PZ0	661 aa	Known RBP	18.37	■□□□□ 0.53
SF1-206	ENST00000413725	ORAI2	Q96SN7	254 aa		18.37	■□□□□ 0.53
SF1-206	ENST00000413725	PHF8	Q9UPP1	1060 aa		18.37	■□□□□ 0.53
SF1-206	ENST00000413725	CCDC61	Q9Y6R9	512 aa		18.37	■□□□□ 0.53
SF1-206	ENST00000413725	AKAP12	Q02952	1782 aa		18.37	■□□□□ 0.53
SF1-206	ENST00000413725	PPIP5K1	Q6PFW1	1433 aa		18.36	■□□□□ 0.53
SF1-206	ENST00000413725	MYOM1	P52179	1685 aa		18.33	■□□□□ 0.52
SF1-206	ENST00000413725	NINL	Q9Y2I6	1382 aa		18.32	■□□□□ 0.52
SF1-206	ENST00000413725	NPHP3	Q7Z494	1330 aa		18.32	■□□□□ 0.52
SF1-206	ENST00000413725	PMFBP1	Q8TBY8	1022 aa		18.32	■□□□□ 0.52
SF1-206	ENST00000413725	COL16A1	Q07092	1604 aa	Predicted RBP	18.31	■□□□□ 0.52
SF1-206	ENST00000413725	PLEKHG3	A1L390	1219 aa		18.31	■□□□□ 0.52
SF1-206	ENST00000413725	NGDN	Q8NEJ9	315 aa	Known RBP	18.31	■□□□□ 0.52
SF1-206	ENST00000413725	MON2	Q7Z3U7	1717 aa		18.31	■□□□□ 0.52
SF1-206	ENST00000413725	FOXO3	O43524	673 aa		18.3	■□□□□ 0.52
SF1-206	ENST00000413725	TMC1	Q8TDI8	760 aa		18.3	■□□□□ 0.52
SF1-206	ENST00000413725	CABP1	Q9NZU7	370 aa		18.3	■□□□□ 0.52
SF1-206	ENST00000413725	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.29	■□□□□ 0.52
SF1-206	ENST00000413725	POLR3GL	Q9BT43	218 aa		18.29	■□□□□ 0.52
SF1-206	ENST00000413725	POLR3A	O14802	1390 aa	Predicted RBP	18.29	■□□□□ 0.52
SF1-206	ENST00000413725	ACE	P12821	1306 aa		18.28	■□□□□ 0.52
SF1-206	ENST00000413725	PXDN	Q92626	1479 aa		18.28	■□□□□ 0.52
SF1-206	ENST00000413725	PSME1	Q06323	249 aa		18.27	■□□□□ 0.52
SF1-206	ENST00000413725	DDX17	Q92841	729 aa	Known RBP	18.27	■□□□□ 0.52
SF1-206	ENST00000413725	HSPA1L	P34931	641 aa		18.26	■□□□□ 0.51
SF1-206	ENST00000413725	SOS2	Q07890	1332 aa	Predicted RBP	18.25	■□□□□ 0.51
SF1-206	ENST00000413725	KRT28	Q7Z3Y7	464 aa		18.25	■□□□□ 0.51
SF1-206	ENST00000413725	SLC12A5	Q9H2X9	1139 aa		18.25	■□□□□ 0.51
SF1-206	ENST00000413725	TERF2IP	Q9NYB0	399 aa		18.25	■□□□□ 0.51
SF1-206	ENST00000413725	SHPRH	Q149N8	1683 aa		18.25	■□□□□ 0.51
SF1-206	ENST00000413725	XPC	Q01831	940 aa	Predicted RBP	18.24	■□□□□ 0.51
SF1-206	ENST00000413725	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	18.24	■□□□□ 0.51
SF1-206	ENST00000413725	ZNF692	Q9BU19	519 aa	Predicted RBP	18.24	■□□□□ 0.51
SF1-206	ENST00000413725	NRK	Q7Z2Y5	1582 aa		18.24	■□□□□ 0.51
SF1-206	ENST00000413725	ALS2	Q96Q42	1657 aa		18.24	■□□□□ 0.51
SF1-206	ENST00000413725	KIF7	Q2M1P5	1343 aa		18.23	■□□□□ 0.51
SF1-206	ENST00000413725	CCDC7	Q96M83	1385 aa		18.23	■□□□□ 0.51
SF1-206	ENST00000413725	C11orf95	C9JLR9	678 aa	Predicted RBP	18.23	■□□□□ 0.51
SF1-206	ENST00000413725	USP6	P35125	1406 aa		18.23	■□□□□ 0.51
SF1-206	ENST00000413725	CPSF1	Q10570	1443 aa	Known RBP	18.23	■□□□□ 0.51
SF1-206	ENST00000413725	CD163L1	Q9NR16	1453 aa		18.22	■□□□□ 0.51
SF1-206	ENST00000413725	SBNO1	A3KN83	1393 aa		18.22	■□□□□ 0.51
SF1-206	ENST00000413725	BRD4	O60885	1362 aa	Predicted RBP	18.22	■□□□□ 0.51
SF1-206	ENST00000413725	KTN1	Q86UP2	1357 aa	Known RBP	18.22	■□□□□ 0.51

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms