RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 NASPP49321 788 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-210ENST00000409694 SLC3A2P08195 630 aaKnown RBP9.43□□□□□ -0.9
SYNE1-210ENST00000409694 STK26Q9P289 416 aa9.43□□□□□ -0.9
SYNE1-210ENST00000409694 STIM1Q13586 685 aa9.43□□□□□ -0.9
SYNE1-210ENST00000409694 TMEM132AQ24JP5 1023 aa9.43□□□□□ -0.9
SYNE1-210ENST00000409694 MYBBP1AQ9BQG0 1328 aaKnown RBP9.42□□□□□ -0.9
SYNE1-210ENST00000409694 ANKRD62A6NC57 917 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 GIMAP7Q8NHV1 300 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 KINO60870 393 aaKnown RBP9.42□□□□□ -0.9
SYNE1-210ENST00000409694 PDCP20941 246 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 FMN1Q68DA7 1419 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 CCDC18Q5T9S5 1454 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 MRE11P49959 708 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 CCDC181Q5TID7 509 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 MBD3O95983 291 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 NACADO15069 1562 aa9.42□□□□□ -0.9
SYNE1-210ENST00000409694 NGDNQ8NEJ9 315 aaKnown RBP9.41□□□□□ -0.9
SYNE1-210ENST00000409694 ZNF396Q96N95 335 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-210ENST00000409694 HIP1O00291 1037 aa9.41□□□□□ -0.9
SYNE1-210ENST00000409694 GOLGA6L10A0A0M3HER8 536 aa9.4□□□□□ -0.9
SYNE1-210ENST00000409694 VPS37CA5D8V6 355 aaPredicted RBP9.4□□□□□ -0.9
SYNE1-210ENST00000409694 JMYQ8N9B5 988 aa9.4□□□□□ -0.9
SYNE1-210ENST00000409694 DDX11Q96FC9 970 aa9.4□□□□□ -0.9
SYNE1-210ENST00000409694 CFAP57Q96MR6 1250 aa9.4□□□□□ -0.9
SYNE1-210ENST00000409694 SIN3AQ96ST3 1273 aa9.4□□□□□ -0.9
SYNE1-210ENST00000409694 G3BP1Q13283 466 aaKnown RBP eCLIP9.4□□□□□ -0.9
SYNE1-210ENST00000409694 RBM33Q96EV2 1170 aaKnown RBP9.4□□□□□ -0.9
SYNE1-210ENST00000409694 MCM3P25205 808 aa9.4□□□□□ -0.91
SYNE1-210ENST00000409694 MCM2P49736 904 aa9.4□□□□□ -0.91
SYNE1-210ENST00000409694 CBFA2T2O43439 604 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 CCDC112Q8NEF3 446 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 SMC2O95347 1197 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 JAKMIP3Q5VZ66 844 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 LRRCC1Q9C099 1032 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 FAM107BQ9H098 131 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.39□□□□□ -0.91
SYNE1-210ENST00000409694 ANKRD18BA2A2Z9 1011 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 FOXD4L6Q3SYB3 417 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-210ENST00000409694 FOXD4L3Q6VB84 417 aaPredicted RBP9.39□□□□□ -0.91
SYNE1-210ENST00000409694 SDF4Q9BRK5 362 aa9.39□□□□□ -0.91
SYNE1-210ENST00000409694 TRIM5Q9C035 493 aa9.38□□□□□ -0.91
SYNE1-210ENST00000409694 TSPY26PQ9H489 355 aa9.38□□□□□ -0.91
SYNE1-210ENST00000409694 FANCIQ9NVI1 1328 aa9.38□□□□□ -0.91
SYNE1-210ENST00000409694 PDE4AP27815 886 aa9.38□□□□□ -0.91
SYNE1-210ENST00000409694 CEP63Q96MT8 703 aa9.38□□□□□ -0.91
SYNE1-210ENST00000409694 TEFQ10587 303 aa9.38□□□□□ -0.91
SYNE1-210ENST00000409694 PPFIBP1Q86W92 1011 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 API5Q9BZZ5 524 aaKnown RBP9.37□□□□□ -0.91
SYNE1-210ENST00000409694 PKD2Q13563 968 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 CLUAP1Q96AJ1 413 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 COG3Q96JB2 828 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 KRT18P05783 430 aaKnown RBP9.37□□□□□ -0.91
SYNE1-210ENST00000409694 EVA1CP58658 441 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 FBXW7Q969H0 707 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 CCDC146Q8IYE0 955 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 NEBLO76041 1014 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 NUP155O75694 1391 aa9.37□□□□□ -0.91
SYNE1-210ENST00000409694 DCAF8L1A6NGE4 600 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 CNTROBQ8N137 903 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 ZBED9Q6R2W3 1325 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 POTEJP0CG39 1038 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 POLR3GO15318 223 aaPredicted RBP9.36□□□□□ -0.91
SYNE1-210ENST00000409694 MEX3CQ5U5Q3 659 aaKnown RBP9.36□□□□□ -0.91
SYNE1-210ENST00000409694 MLECQ14165 292 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 MAP9Q49MG5 647 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 PDIA4P13667 645 aaKnown RBP9.36□□□□□ -0.91
SYNE1-210ENST00000409694 GRIPAP1Q4V328 841 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 TTLL5Q6EMB2 1281 aa9.36□□□□□ -0.91
SYNE1-210ENST00000409694 EVC2Q86UK5 1308 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 SHTN1A0MZ66 631 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 CCDC97Q96F63 343 aaPredicted RBP9.35□□□□□ -0.91
SYNE1-210ENST00000409694 RRP1P56182 461 aaKnown RBP9.35□□□□□ -0.91
SYNE1-210ENST00000409694 GIGYF2Q6Y7W6 1299 aaKnown RBP9.35□□□□□ -0.91
SYNE1-210ENST00000409694 GBP3Q9H0R5 595 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 PDCL2Q8N4E4 241 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 MIA2Q96PC5 1412 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 CETN2P41208 172 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 SKIDA1Q1XH10 827 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 MICALCLQ6ZW33 695 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 TAX1BP1Q86VP1 789 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 TBC1D2BQ9UPU7 963 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 CCDC144AA2RUR9 1427 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 VPS8Q8N3P4 1428 aa9.35□□□□□ -0.91
SYNE1-210ENST00000409694 RSPH4AQ5TD94 716 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 PDCL3Q9H2J4 239 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 CCDC192P0DO97 292 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 PKNOX2Q96KN3 472 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 TSHZ2Q9NRE2 1034 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 AEBP2Q6ZN18 517 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-210ENST00000409694 PRDM2Q13029 1718 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 ERC1Q8IUD2 1116 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 ANKRD1Q15327 319 aa9.34□□□□□ -0.91
SYNE1-210ENST00000409694 DZIP1LQ8IYY4 767 aaKnown RBP9.34□□□□□ -0.91
SYNE1-210ENST00000409694 IKQ13123 557 aaPredicted RBP9.34□□□□□ -0.91
SYNE1-210ENST00000409694 KIF2AO00139 706 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-210ENST00000409694 MAP2K1Q02750 393 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-210ENST00000409694 GCOM1H8Y6P7 765 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-210ENST00000409694 MYZAPP0CAP1 466 aa9.33□□□□□ -0.92
SYNE1-210ENST00000409694 TRHP20396 242 aaPredicted RBP9.33□□□□□ -0.92
SYNE1-210ENST00000409694 DDX23Q9BUQ8 820 aaKnown RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms